Wall clock time and date at job start Tue Mar 31 2020 18:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00142 * 2 1 4 4 C 1.50696 * 109.47193 * 89.99333 * 3 2 1 5 5 C 1.38224 * 120.01098 * 105.00143 * 4 3 2 6 6 C 1.38214 * 120.02655 * 179.97438 * 5 4 3 7 7 C 1.38270 * 120.05424 * 0.02852 * 6 5 4 8 8 C 1.38180 * 120.02318 * 359.97438 * 7 6 5 9 9 C 1.38435 * 120.01674 * 284.72709 * 4 3 2 10 10 F 1.35103 * 120.02726 * 0.02562 * 9 4 3 11 11 C 1.34779 * 120.00147 * 180.27169 * 2 1 3 12 12 O 1.21275 * 119.99944 * 179.72868 * 11 2 1 13 13 C 1.50701 * 119.99745 * 359.72851 * 11 2 1 14 14 N 1.46901 * 109.46878 * 175.44031 * 13 11 2 15 15 C 1.46904 * 111.00283 * 76.29808 * 14 13 11 16 16 C 1.50702 * 109.47193 * 189.99933 * 15 14 13 17 17 H 1.07999 * 119.99780 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99768 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99701 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00079 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47314 * 89.99904 * 20 18 16 22 22 H 1.48504 * 109.46642 * 210.00084 * 20 18 16 23 23 H 1.48503 * 109.47168 * 329.99756 * 20 18 16 24 24 C 1.46903 * 110.99858 * 200.25480 * 14 13 11 25 25 C 1.52997 * 109.47154 * 75.38725 * 24 14 13 26 26 C 1.53001 * 117.49753 * 244.32944 * 25 24 14 27 27 C 1.52998 * 117.49978 * 175.70707 * 25 24 14 28 28 H 1.09006 * 109.46978 * 90.00421 * 1 2 3 29 29 H 1.09002 * 109.46938 * 209.99947 * 1 2 3 30 30 H 1.08992 * 109.47255 * 330.00310 * 1 2 3 31 31 H 1.08999 * 109.47353 * 210.00102 * 3 2 1 32 32 H 1.09011 * 109.46514 * 329.99883 * 3 2 1 33 33 H 1.08004 * 119.98392 * 0.02562 * 5 4 3 34 34 H 1.08004 * 119.97601 * 179.97438 * 6 5 4 35 35 H 1.08002 * 119.98827 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.01444 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.47124 * 295.43910 * 13 11 2 38 38 H 1.09000 * 109.47355 * 55.43755 * 13 11 2 39 39 H 1.08993 * 109.46942 * 310.00195 * 15 14 13 40 40 H 1.09003 * 109.46803 * 69.99706 * 15 14 13 41 41 H 0.97001 * 119.99877 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46999 * 195.38830 * 24 14 13 43 43 H 1.08996 * 109.46916 * 315.38687 * 24 14 13 44 44 H 1.09000 * 115.55095 * 30.03175 * 25 24 14 45 45 H 1.08997 * 117.50033 * 359.97438 * 26 25 24 46 46 H 1.08992 * 117.49995 * 145.02395 * 26 25 24 47 47 H 1.08996 * 117.50029 * 214.97831 * 27 25 24 48 48 H 1.09006 * 117.49666 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 6 3.7110 1.5783 1.9694 6 6 3.9418 1.9778 3.2723 7 6 2.9102 2.5028 4.0286 8 6 1.6473 2.6292 3.4823 9 6 1.4163 2.2347 2.1751 10 9 0.1831 2.3625 1.6383 11 6 2.1389 -1.1672 -0.0055 12 8 3.3517 -1.1671 -0.0105 13 6 1.3854 -2.4723 -0.0055 14 7 2.3358 -3.5864 -0.1222 15 6 3.0202 -3.8305 1.1546 16 6 4.1513 -4.8030 0.9403 17 1 4.3429 -5.1997 -0.0458 18 6 4.9415 -5.1863 2.0031 19 7 5.9289 -6.0346 1.8161 20 14 4.6096 -4.5006 3.7088 21 1 3.6539 -5.3863 4.4210 22 1 5.8825 -4.4314 4.4706 23 1 4.0288 -3.1390 3.5906 24 6 1.6651 -4.8025 -0.6010 25 6 1.3876 -4.6753 -2.1002 26 6 -0.0752 -4.6463 -2.5479 27 6 0.7813 -5.8864 -2.8117 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 3.1500 1.1384 -0.5138 32 1 1.6084 2.0284 -0.5139 33 1 4.5177 1.1687 1.3795 34 1 4.9284 1.8790 3.7004 35 1 3.0916 2.8142 5.0468 36 1 0.8415 3.0389 4.0733 37 1 0.8253 -2.5684 0.9246 38 1 0.6954 -2.4935 -0.8490 39 1 3.4167 -2.8911 1.5396 40 1 2.3132 -4.2476 1.8718 41 1 6.4846 -6.3045 2.5639 42 1 2.3065 -5.6655 -0.4221 43 1 0.7239 -4.9325 -0.0670 44 1 2.0976 -4.0662 -2.6597 45 1 -0.8397 -4.7184 -1.7744 46 1 -0.3277 -4.0182 -3.4021 47 1 1.0921 -6.0741 -3.8394 48 1 0.5804 -6.7741 -2.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081061777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:22 Heat of formation + Delta-G solvation = -28.483962 kcal Electronic energy + Delta-G solvation = -29554.577874 eV Core-core repulsion = 25524.687683 eV Total energy + Delta-G solvation = -4029.890191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -50.02106 -41.12609 -39.88747 -38.93121 -36.97156 -36.42114 -34.59480 -33.13089 -31.50413 -30.49202 -29.33547 -28.11933 -26.92023 -25.48652 -23.76675 -23.23972 -22.96680 -22.36441 -21.19002 -20.13473 -18.99801 -18.70402 -18.11921 -17.43140 -17.28718 -17.23150 -16.78254 -16.58783 -16.33703 -16.04078 -15.59522 -15.34163 -15.14680 -14.88508 -14.59978 -14.47060 -14.42311 -14.04955 -13.85310 -13.80819 -13.49125 -13.39275 -13.19115 -13.11676 -12.82037 -12.62692 -12.47503 -12.43462 -12.28384 -12.03054 -11.98078 -11.86272 -11.53292 -11.13836 -10.82311 -10.78639 -10.61694 -10.00005 -9.79413 -9.58822 -9.02441 -8.28744 -6.29358 0.08872 0.20339 1.26030 1.30438 1.41523 1.71444 1.99032 2.31805 2.64701 2.95449 3.03807 3.19840 3.20673 3.62827 3.64909 3.80233 3.98529 4.00640 4.12208 4.14413 4.21390 4.22265 4.30170 4.32789 4.39378 4.48749 4.50119 4.55957 4.70182 4.75824 4.82832 4.85202 4.87239 4.92151 4.97124 5.06610 5.07032 5.14524 5.17609 5.33395 5.34706 5.42043 5.45064 5.52444 5.57183 5.90098 5.94853 6.28589 6.44066 6.63518 6.74594 7.31880 7.32306 8.88386 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008944 B = 0.004565 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.813116 B = 6132.164969 C = 8579.723829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.615 5.615 3 C 0.157 3.843 4 C -0.149 4.149 5 C -0.091 4.091 6 C -0.139 4.139 7 C -0.087 4.087 8 C -0.157 4.157 9 C 0.097 3.903 10 F -0.133 7.133 11 C 0.507 3.493 12 O -0.554 6.554 13 C 0.043 3.957 14 N -0.529 5.529 15 C 0.181 3.819 16 C -0.505 4.505 17 H 0.037 0.963 18 C 0.009 3.991 19 N -0.947 5.947 20 Si 0.942 3.058 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.264 1.264 24 C 0.098 3.902 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.178 4.178 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.021 0.979 40 H -0.017 1.017 41 H 0.266 0.734 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 18.620 -0.225 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.349 5.349 3 C 0.035 3.965 4 C -0.152 4.152 5 C -0.110 4.110 6 C -0.158 4.158 7 C -0.105 4.105 8 C -0.176 4.176 9 C 0.078 3.922 10 F -0.112 7.112 11 C 0.295 3.705 12 O -0.430 6.430 13 C -0.088 4.088 14 N -0.253 5.253 15 C 0.054 3.946 16 C -0.543 4.543 17 H 0.055 0.945 18 C -0.188 4.188 19 N -0.588 5.588 20 Si 0.766 3.234 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.029 4.029 25 C -0.180 4.180 26 C -0.195 4.195 27 C -0.216 4.216 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.160 0.840 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.039 0.961 40 H 0.001 0.999 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.122 0.878 46 H 0.127 0.873 47 H 0.120 0.880 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.371 18.647 -0.528 24.819 hybrid contribution 0.042 -0.408 1.109 1.183 sum -16.329 18.239 0.581 24.487 Atomic orbital electron populations 1.22309 0.77220 1.04921 1.03731 1.47983 1.08255 1.04485 1.74199 1.20255 0.98784 0.85588 0.91907 1.20375 0.93758 1.02520 0.98499 1.21173 0.96205 0.97202 0.96376 1.21543 1.01158 0.99189 0.93861 1.21410 0.91293 0.96698 1.01101 1.21456 0.99736 1.02935 0.93442 1.17614 0.79629 1.01849 0.93119 1.91365 1.39966 1.93656 1.86187 1.21120 0.87963 0.86144 0.75296 1.90713 1.15866 1.87386 1.49016 1.22033 0.94242 0.89130 1.03405 1.61378 1.28157 1.05410 1.30345 1.19858 0.92642 0.95282 0.86772 1.21191 1.13491 1.24319 0.95311 0.94467 1.25753 0.94633 0.95191 1.03174 1.70044 1.20410 1.35299 1.33070 0.85797 0.78284 0.79620 0.79730 1.18461 1.20351 1.18838 1.21532 0.96188 0.91931 0.93292 1.22163 0.97416 1.03581 0.94824 1.23137 0.92218 1.00504 1.03666 1.22990 1.04338 0.92672 1.01558 0.90287 0.90519 0.88994 0.90393 0.87020 0.86433 0.84033 0.81954 0.82238 0.91538 0.85605 0.96141 0.99929 0.92499 0.92597 0.93909 0.89254 0.87802 0.87335 0.88040 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 10.14 127.77 1.30 2.35 16 2 N -0.61 -16.39 2.86 -851.12 -2.43 -18.82 16 3 C 0.16 3.92 5.27 85.63 0.45 4.38 16 4 C -0.15 -3.81 5.47 -19.82 -0.11 -3.92 16 5 C -0.09 -2.49 9.67 22.26 0.22 -2.27 16 6 C -0.14 -3.13 10.04 22.27 0.22 -2.91 16 7 C -0.09 -1.55 10.04 22.26 0.22 -1.33 16 8 C -0.16 -2.86 10.03 22.31 0.22 -2.64 16 9 C 0.10 2.14 7.25 22.38 0.16 2.30 16 10 F -0.13 -2.64 13.84 44.97 0.62 -2.01 16 11 C 0.51 18.30 7.42 87.66 0.65 18.95 16 12 O -0.55 -25.95 14.64 -3.01 -0.04 -25.99 16 13 C 0.04 1.43 3.78 85.56 0.32 1.75 16 14 N -0.53 -23.15 4.01 -905.35 -3.63 -26.78 16 15 C 0.18 9.47 3.39 85.56 0.29 9.76 16 16 C -0.50 -31.22 8.79 25.60 0.23 -30.99 16 17 H 0.04 2.56 7.55 -2.91 -0.02 2.54 16 18 C 0.01 0.58 5.47 84.65 0.46 1.04 16 19 N -0.95 -61.82 13.96 21.45 0.30 -61.52 16 20 Si 0.94 47.15 27.47 68.60 1.88 49.03 16 21 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.26 -12.98 6.54 99.48 0.65 -12.32 16 24 C 0.10 3.77 5.07 86.30 0.44 4.20 16 25 C -0.16 -5.03 5.15 -10.79 -0.06 -5.08 16 26 C -0.16 -3.43 10.03 30.59 0.31 -3.12 16 27 C -0.18 -4.52 10.25 30.59 0.31 -4.20 16 28 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.08 1.26 6.58 -2.39 -0.02 1.25 16 30 H 0.09 1.49 4.95 -2.39 -0.01 1.47 16 31 H 0.08 2.25 7.22 -2.39 -0.02 2.23 16 32 H 0.11 2.10 8.01 -2.38 -0.02 2.08 16 33 H 0.12 3.61 8.00 -2.91 -0.02 3.58 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.07 2.04 7.49 -2.39 -0.02 2.03 16 38 H 0.13 3.30 6.98 -2.39 -0.02 3.28 16 39 H 0.02 1.15 5.68 -2.39 -0.01 1.14 16 40 H -0.02 -0.84 7.55 -2.39 -0.02 -0.86 16 41 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 42 H 0.06 2.60 6.58 -2.39 -0.02 2.59 16 43 H 0.04 1.43 7.74 -2.39 -0.02 1.41 16 44 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.10 1.97 8.03 -2.39 -0.02 1.95 16 46 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -80.37 390.35 3.24 -77.13 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.90 Total: 20.71 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.64 Total: -11.74 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -5.77 Total: -107.12 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.04 Total: -25.99 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.62 Total: -2.01 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.88 Total: 49.03 kcal Total: -80.37 3.24 -77.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081061777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.649 kcal (2) G-P(sol) polarization free energy of solvation -80.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds