Wall clock time and date at job start Tue Mar 31 2020 17:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31512 * 119.99923 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00006 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47093 * 90.00088 * 8 6 4 10 10 H 1.48500 * 109.47049 * 210.00797 * 8 6 4 11 11 H 1.48504 * 109.47189 * 330.00185 * 8 6 4 12 12 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 13 13 C 1.34769 * 119.99686 * 84.99974 * 12 2 1 14 14 O 1.21275 * 120.00678 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99690 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.50029 * 59.92517 * 15 13 12 17 17 C 1.53116 * 109.50727 * 299.80406 * 15 13 12 18 18 C 1.53117 * 109.16448 * 182.40186 * 17 15 13 19 19 C 1.53038 * 109.27767 * 57.65761 * 18 17 15 20 20 N 1.46852 * 109.52007 * 300.81889 * 19 18 17 21 21 C 1.46904 * 110.99637 * 185.83632 * 20 19 18 22 22 C 1.50695 * 109.46930 * 45.79444 * 21 20 19 23 23 C 1.38267 * 119.98670 * 269.72299 * 22 21 20 24 24 C 1.38226 * 120.05198 * 179.72960 * 23 22 21 25 25 C 1.38226 * 120.02278 * 0.54585 * 24 23 22 26 26 C 1.38436 * 119.97144 * 359.72783 * 25 24 23 27 27 F 1.35104 * 120.02194 * 180.02562 * 26 25 24 28 28 C 1.38177 * 119.98810 * 90.00133 * 22 21 20 29 29 C 1.46849 * 111.19525 * 61.74566 * 20 19 18 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 0.97000 * 119.99684 * 180.02562 * 7 6 4 34 34 H 0.97000 * 119.99634 * 265.00306 * 12 2 1 35 35 H 1.08999 * 109.52151 * 302.31499 * 17 15 13 36 36 H 1.09008 * 109.51953 * 62.49996 * 17 15 13 37 37 H 1.08997 * 109.50589 * 297.71572 * 18 17 15 38 38 H 1.09004 * 109.50316 * 177.59822 * 18 17 15 39 39 H 1.08996 * 109.46095 * 180.80610 * 19 18 17 40 40 H 1.09003 * 109.46221 * 60.82991 * 19 18 17 41 41 H 1.09008 * 109.46699 * 165.79015 * 21 20 19 42 42 H 1.08992 * 109.47092 * 285.78751 * 21 20 19 43 43 H 1.08001 * 119.97297 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.98642 * 180.27313 * 24 23 22 45 45 H 1.07993 * 120.01171 * 179.70672 * 25 24 23 46 46 H 1.08000 * 120.01659 * 359.96642 * 28 22 21 47 47 H 1.09000 * 109.46126 * 178.24168 * 29 20 19 48 48 H 1.08997 * 109.46641 * 58.27586 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1472 -0.0183 -2.3570 14 8 1.8592 1.1585 -2.4115 15 6 2.6501 -0.7285 -3.5873 16 1 1.9790 -1.5519 -3.8321 17 6 4.0559 -1.2750 -3.3235 18 6 4.5830 -1.9423 -4.5968 19 6 4.5787 -0.9245 -5.7396 20 7 3.2117 -0.4324 -5.9533 21 6 3.1452 0.4420 -7.1319 22 6 3.8942 -0.1960 -8.2734 23 6 5.2404 0.0660 -8.4489 24 6 5.9300 -0.5228 -9.4921 25 6 5.2717 -1.3655 -10.3679 26 6 3.9226 -1.6241 -10.1966 27 9 3.2782 -2.4481 -11.0517 28 6 3.2340 -1.0381 -9.1477 29 6 2.7019 0.2541 -4.7594 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9032 -0.5279 4.4375 34 1 2.2491 -1.6318 -1.1525 35 1 4.7177 -0.4564 -3.0404 36 1 4.0164 -2.0080 -2.5176 37 1 3.9429 -2.7851 -4.8577 38 1 5.6002 -2.2958 -4.4281 39 1 4.9400 -1.4004 -6.6512 40 1 5.2298 -0.0885 -5.4838 41 1 2.1034 0.5882 -7.4175 42 1 3.5957 1.4058 -6.8952 43 1 5.7545 0.7282 -7.7679 44 1 6.9825 -0.3209 -9.6255 45 1 5.8096 -1.8217 -11.1858 46 1 2.1816 -1.2395 -9.0129 47 1 1.7000 0.6342 -4.9591 48 1 3.3617 1.0846 -4.5083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194630060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:20 Heat of formation + Delta-G solvation = -58.458386 kcal Electronic energy + Delta-G solvation = -28517.867110 eV Core-core repulsion = 24486.677131 eV Total energy + Delta-G solvation = -4031.189979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.19348 -40.31881 -39.40462 -37.87138 -35.02678 -34.31049 -32.38577 -31.45065 -31.23664 -30.73480 -29.48734 -26.72822 -25.22054 -24.26035 -23.26441 -23.03097 -21.83828 -20.98116 -19.90785 -19.38842 -17.70752 -17.26277 -16.68677 -16.56127 -16.32459 -15.90264 -15.68973 -15.57340 -15.02975 -14.71851 -14.52755 -14.26560 -14.06937 -14.02174 -13.60799 -13.32741 -13.09783 -13.02050 -12.69206 -12.65504 -12.35987 -12.22965 -12.19062 -11.96689 -11.75121 -11.47214 -11.30232 -11.21202 -10.94205 -10.81584 -10.65369 -10.45902 -10.18855 -9.70018 -9.38749 -9.23378 -9.06010 -9.03171 -8.76219 -8.45645 -8.14437 -6.21630 -4.23972 0.74120 0.83623 3.11400 3.21669 3.24422 3.34697 3.39257 3.67045 3.86599 4.15396 4.26809 4.31080 4.40131 4.64598 4.66933 4.78691 4.82849 4.89955 4.95468 5.09488 5.13326 5.15509 5.27599 5.32754 5.45290 5.50263 5.51235 5.64025 5.67913 5.71692 5.75276 5.85273 5.86341 5.92210 5.97248 6.11459 6.15900 6.29242 6.31477 6.38485 6.50658 6.56558 6.84799 6.86059 6.90918 7.19593 7.29660 7.52240 8.15035 8.53401 8.75476 8.94361 9.39521 10.90533 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029973 B = 0.002113 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.934548 B =13245.950275 C =13458.994674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.509 3.491 14 O -0.559 6.559 15 C -0.103 4.103 16 H 0.101 0.899 17 C -0.113 4.113 18 C -0.114 4.114 19 C 0.048 3.952 20 N -0.533 5.533 21 C 0.092 3.908 22 C -0.050 4.050 23 C -0.124 4.124 24 C -0.091 4.091 25 C -0.156 4.156 26 C 0.097 3.903 27 F -0.141 7.141 28 C -0.133 4.133 29 C 0.079 3.921 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.395 0.605 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.138 0.862 47 H 0.082 0.918 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -1.442 -26.644 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.293 3.707 14 O -0.439 6.439 15 C -0.125 4.125 16 H 0.119 0.881 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.080 4.080 20 N -0.257 5.257 21 C -0.035 4.035 22 C -0.050 4.050 23 C -0.143 4.143 24 C -0.109 4.109 25 C -0.175 4.175 26 C 0.078 3.922 27 F -0.119 7.119 28 C -0.152 4.152 29 C -0.049 4.049 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.156 0.844 47 H 0.101 0.899 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.187 -1.033 -26.548 27.279 hybrid contribution -0.120 0.755 0.339 0.836 sum 6.067 -0.278 -26.209 26.904 Atomic orbital electron populations 1.22445 0.99349 1.00837 0.99261 1.19093 0.90111 0.94638 0.82916 0.93488 1.21040 1.33210 1.14380 0.88541 0.90216 1.24840 0.95516 0.96711 0.95552 1.69869 1.44913 1.40140 0.98033 0.86871 0.80544 0.83629 0.77392 1.20312 1.22190 1.18704 1.46182 1.64904 1.13832 1.09759 1.20389 0.78199 0.87320 0.84754 1.90641 1.51732 1.16206 1.85314 1.21294 0.98592 0.99346 0.93248 0.88078 1.21583 0.94735 1.00702 0.98107 1.21578 1.01350 0.98311 0.93928 1.22279 0.88821 0.97663 0.99232 1.62060 1.22490 1.37909 1.03263 1.21095 1.00533 0.93854 0.88063 1.19632 0.93742 0.96197 0.95437 1.21202 0.93876 1.00761 0.98482 1.20983 1.00151 0.95838 0.93976 1.21161 0.93010 1.01481 1.01892 1.17722 0.91038 0.93106 0.90373 1.91509 1.81767 1.69861 1.68798 1.21047 1.01364 0.98425 0.94401 1.21804 1.01099 0.94218 0.87777 0.94576 0.92821 0.93512 0.92304 0.77140 0.91586 0.90690 0.90898 0.91207 0.90249 0.94844 0.89318 0.93245 0.85462 0.84969 0.84877 0.84420 0.89914 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.26 16 2 C 0.24 5.60 2.15 -69.08 -0.15 5.45 16 3 H 0.05 1.24 6.63 -51.93 -0.34 0.89 16 4 C -0.53 -14.33 9.31 -34.44 -0.32 -14.65 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 8 Si 0.89 21.78 24.37 -169.99 -4.14 17.64 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.70 -13.62 4.97 -54.93 -0.27 -13.90 16 13 C 0.51 9.31 7.12 -10.99 -0.08 9.23 16 14 O -0.56 -12.27 15.65 5.56 0.09 -12.18 16 15 C -0.10 -1.39 2.69 -91.69 -0.25 -1.63 16 16 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.11 -1.34 5.16 -26.61 -0.14 -1.48 16 18 C -0.11 -1.11 6.09 -26.65 -0.16 -1.27 16 19 C 0.05 0.46 4.58 -3.83 -0.02 0.44 16 20 N -0.53 -5.56 4.80 -236.11 -1.13 -6.69 16 21 C 0.09 0.81 5.43 -4.98 -0.03 0.78 16 22 C -0.05 -0.41 4.11 -104.64 -0.43 -0.84 16 23 C -0.12 -0.90 7.81 -39.57 -0.31 -1.21 16 24 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 25 C -0.16 -1.14 10.03 -39.51 -0.40 -1.54 16 26 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 27 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 28 C -0.13 -1.15 9.68 -39.52 -0.38 -1.54 16 29 C 0.08 1.00 4.00 -3.83 -0.02 0.98 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.40 6.80 8.02 -40.82 -0.33 6.47 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.88 7.66 -51.92 -0.40 0.48 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.72 5.65 -51.93 -0.29 0.43 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.74 8.09 -51.92 -0.42 0.32 16 42 H 0.05 0.43 8.02 -51.93 -0.42 0.01 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 48 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -31.29 380.49 -9.50 -40.79 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.46 Total: 4.42 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.12 Total: -8.88 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.63 Total: -46.16 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.29 -9.50 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194630060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.672 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds