Wall clock time and date at job start Tue Mar 31 2020 17:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31512 * 119.99923 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00006 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47093 * 90.00088 * 8 6 4 10 10 H 1.48500 * 109.47049 * 210.00797 * 8 6 4 11 11 H 1.48504 * 109.47189 * 330.00185 * 8 6 4 12 12 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 13 13 C 1.34769 * 119.99686 * 84.99974 * 12 2 1 14 14 O 1.21275 * 120.00678 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99690 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.50029 * 59.92517 * 15 13 12 17 17 C 1.53116 * 109.50727 * 299.80406 * 15 13 12 18 18 C 1.53117 * 109.16448 * 182.40186 * 17 15 13 19 19 C 1.53038 * 109.27767 * 57.65761 * 18 17 15 20 20 N 1.46852 * 109.52007 * 300.81889 * 19 18 17 21 21 C 1.46904 * 110.99637 * 185.83632 * 20 19 18 22 22 C 1.50695 * 109.46930 * 45.79444 * 21 20 19 23 23 C 1.38267 * 119.98670 * 269.72299 * 22 21 20 24 24 C 1.38226 * 120.05198 * 179.72960 * 23 22 21 25 25 C 1.38226 * 120.02278 * 0.54585 * 24 23 22 26 26 C 1.38436 * 119.97144 * 359.72783 * 25 24 23 27 27 F 1.35104 * 120.02194 * 180.02562 * 26 25 24 28 28 C 1.38177 * 119.98810 * 90.00133 * 22 21 20 29 29 C 1.46849 * 111.19525 * 61.74566 * 20 19 18 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 0.97000 * 119.99684 * 180.02562 * 7 6 4 34 34 H 0.97000 * 119.99634 * 265.00306 * 12 2 1 35 35 H 1.08999 * 109.52151 * 302.31499 * 17 15 13 36 36 H 1.09008 * 109.51953 * 62.49996 * 17 15 13 37 37 H 1.08997 * 109.50589 * 297.71572 * 18 17 15 38 38 H 1.09004 * 109.50316 * 177.59822 * 18 17 15 39 39 H 1.08996 * 109.46095 * 180.80610 * 19 18 17 40 40 H 1.09003 * 109.46221 * 60.82991 * 19 18 17 41 41 H 1.09008 * 109.46699 * 165.79015 * 21 20 19 42 42 H 1.08992 * 109.47092 * 285.78751 * 21 20 19 43 43 H 1.08001 * 119.97297 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.98642 * 180.27313 * 24 23 22 45 45 H 1.07993 * 120.01171 * 179.70672 * 25 24 23 46 46 H 1.08000 * 120.01659 * 359.96642 * 28 22 21 47 47 H 1.09000 * 109.46126 * 178.24168 * 29 20 19 48 48 H 1.08997 * 109.46641 * 58.27586 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1472 -0.0183 -2.3570 14 8 1.8592 1.1585 -2.4115 15 6 2.6501 -0.7285 -3.5873 16 1 1.9790 -1.5519 -3.8321 17 6 4.0559 -1.2750 -3.3235 18 6 4.5830 -1.9423 -4.5968 19 6 4.5787 -0.9245 -5.7396 20 7 3.2117 -0.4324 -5.9533 21 6 3.1452 0.4420 -7.1319 22 6 3.8942 -0.1960 -8.2734 23 6 5.2404 0.0660 -8.4489 24 6 5.9300 -0.5228 -9.4921 25 6 5.2717 -1.3655 -10.3679 26 6 3.9226 -1.6241 -10.1966 27 9 3.2782 -2.4481 -11.0517 28 6 3.2340 -1.0381 -9.1477 29 6 2.7019 0.2541 -4.7594 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9032 -0.5279 4.4375 34 1 2.2491 -1.6318 -1.1525 35 1 4.7177 -0.4564 -3.0404 36 1 4.0164 -2.0080 -2.5176 37 1 3.9429 -2.7851 -4.8577 38 1 5.6002 -2.2958 -4.4281 39 1 4.9400 -1.4004 -6.6512 40 1 5.2298 -0.0885 -5.4838 41 1 2.1034 0.5882 -7.4175 42 1 3.5957 1.4058 -6.8952 43 1 5.7545 0.7282 -7.7679 44 1 6.9825 -0.3209 -9.6255 45 1 5.8096 -1.8217 -11.1858 46 1 2.1816 -1.2395 -9.0129 47 1 1.7000 0.6342 -4.9591 48 1 3.3617 1.0846 -4.5083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194630060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:19 Heat of formation + Delta-G solvation = -78.505744 kcal Electronic energy + Delta-G solvation = -28518.736429 eV Core-core repulsion = 24486.677131 eV Total energy + Delta-G solvation = -4032.059298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.87531 -41.34435 -40.41624 -38.88400 -36.82689 -35.21782 -34.33341 -32.37670 -32.16754 -31.52754 -30.91542 -27.46739 -27.23214 -25.38702 -24.14291 -23.66662 -22.93034 -22.16679 -21.22837 -20.63368 -19.10463 -18.24633 -17.81717 -17.36623 -17.31165 -17.12777 -16.89762 -16.53234 -16.15058 -15.94991 -15.69522 -15.26605 -15.10390 -14.99294 -14.82719 -14.60282 -14.30444 -14.14596 -14.11337 -13.79122 -13.54867 -13.40512 -13.18904 -13.07674 -12.93815 -12.78829 -12.57905 -12.36161 -12.14798 -11.94395 -11.81166 -11.63286 -11.58036 -11.39275 -11.26187 -10.87689 -10.57911 -9.96964 -9.86550 -9.65739 -9.27065 -8.38259 -6.43770 0.15156 0.26819 1.26786 1.34901 1.44218 1.75532 2.25626 2.31540 2.60734 2.97867 3.12364 3.25397 3.63838 3.66110 3.84327 3.85197 3.92842 4.12393 4.20395 4.25204 4.26447 4.30540 4.38472 4.45584 4.53390 4.57548 4.61221 4.61421 4.69962 4.74708 4.78842 4.94046 4.94857 4.98435 4.99940 5.10517 5.11707 5.19342 5.21515 5.32363 5.37387 5.40293 5.43047 5.52893 5.65756 5.92627 6.01198 6.08779 6.13850 6.57941 6.87787 7.19263 7.45159 8.76859 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029973 B = 0.002113 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.934548 B =13245.950275 C =13458.994674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.241 3.759 3 H 0.021 0.979 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.028 3.972 7 N -0.933 5.933 8 Si 0.938 3.062 9 H -0.260 1.260 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.698 5.698 13 C 0.508 3.492 14 O -0.596 6.596 15 C -0.091 4.091 16 H 0.118 0.882 17 C -0.111 4.111 18 C -0.107 4.107 19 C 0.048 3.952 20 N -0.532 5.532 21 C 0.092 3.908 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.087 4.087 25 C -0.156 4.156 26 C 0.076 3.924 27 F -0.152 7.152 28 C -0.141 4.141 29 C 0.087 3.913 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.270 0.730 34 H 0.407 0.593 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.139 0.861 44 H 0.160 0.840 45 H 0.150 0.850 46 H 0.136 0.864 47 H 0.074 0.926 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -1.611 -28.439 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.038 0.962 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.172 4.172 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.186 1.186 10 H -0.220 1.220 11 H -0.189 1.189 12 N -0.347 5.347 13 C 0.295 3.705 14 O -0.478 6.478 15 C -0.112 4.112 16 H 0.136 0.864 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.079 4.079 20 N -0.257 5.257 21 C -0.035 4.035 22 C -0.057 4.057 23 C -0.143 4.143 24 C -0.105 4.105 25 C -0.174 4.174 26 C 0.057 3.943 27 F -0.131 7.131 28 C -0.161 4.161 29 C -0.042 4.042 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.242 0.758 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.157 0.843 44 H 0.177 0.823 45 H 0.168 0.832 46 H 0.154 0.846 47 H 0.092 0.908 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.762 -1.229 -28.373 29.194 hybrid contribution -0.210 0.788 0.838 1.169 sum 6.552 -0.441 -27.535 28.308 Atomic orbital electron populations 1.22342 0.97892 1.01692 0.99386 1.18753 0.91167 0.93108 0.83369 0.96160 1.21247 1.32259 1.13532 0.89848 0.92403 1.25555 0.96878 0.99306 0.95420 1.69973 1.46656 1.41916 0.98626 0.86012 0.79831 0.80433 0.77124 1.18570 1.21993 1.18856 1.46031 1.65177 1.14356 1.09132 1.21191 0.76925 0.86917 0.85431 1.90621 1.53150 1.18056 1.85951 1.21249 0.99725 0.99372 0.90886 0.86373 1.21584 0.93315 1.00407 0.99570 1.21561 1.02310 0.98130 0.92514 1.22320 0.88274 0.97679 0.99639 1.62053 1.23159 1.37830 1.02642 1.21106 1.00966 0.93755 0.87651 1.19568 0.94268 0.96576 0.95268 1.21406 0.93442 1.00617 0.98831 1.21294 1.01368 0.94769 0.93021 1.21430 0.92398 1.01227 1.02380 1.17961 0.91884 0.93774 0.90702 1.91477 1.82113 1.70312 1.69178 1.21092 1.01488 0.98790 0.94709 1.21634 1.00473 0.93605 0.88457 0.93588 0.91598 0.94170 0.92074 0.75769 0.92851 0.90469 0.90442 0.89489 0.89223 0.94788 0.89156 0.93005 0.84297 0.82257 0.83242 0.84607 0.90780 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.74 8.96 71.98 0.65 -6.09 16 2 C 0.24 11.39 2.15 44.25 0.10 11.49 16 3 H 0.02 1.08 6.63 -2.39 -0.02 1.07 16 4 C -0.53 -28.72 9.31 25.60 0.24 -28.48 16 5 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 6 C 0.03 1.58 5.45 84.65 0.46 2.05 16 7 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 8 Si 0.94 44.75 24.37 68.60 1.67 46.43 16 9 H -0.26 -11.65 6.87 99.48 0.68 -10.97 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.26 -12.55 6.53 99.48 0.65 -11.90 16 12 N -0.70 -26.91 4.97 -446.09 -2.22 -29.13 16 13 C 0.51 18.36 7.12 87.66 0.62 18.98 16 14 O -0.60 -26.20 15.65 -3.01 -0.05 -26.25 16 15 C -0.09 -2.33 2.69 -11.49 -0.03 -2.37 16 16 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 17 C -0.11 -2.46 5.16 30.67 0.16 -2.30 16 18 C -0.11 -1.82 6.09 30.65 0.19 -1.63 16 19 C 0.05 0.82 4.58 86.33 0.40 1.21 16 20 N -0.53 -10.27 4.80 -900.91 -4.32 -14.59 16 21 C 0.09 1.51 5.43 85.55 0.46 1.98 16 22 C -0.06 -0.84 4.11 -19.87 -0.08 -0.92 16 23 C -0.12 -1.48 7.81 22.27 0.17 -1.31 16 24 C -0.09 -0.86 10.04 22.26 0.22 -0.64 16 25 C -0.16 -1.92 10.03 22.31 0.22 -1.70 16 26 C 0.08 1.26 7.30 22.37 0.16 1.43 16 27 F -0.15 -2.95 17.27 44.97 0.78 -2.17 16 28 C -0.14 -2.31 9.68 22.31 0.22 -2.10 16 29 C 0.09 2.12 4.00 86.33 0.35 2.47 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.41 13.72 8.02 -92.71 -0.74 12.98 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.68 7.66 -2.38 -0.02 1.66 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.38 5.65 -2.39 -0.01 1.37 16 40 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 1.44 8.09 -2.38 -0.02 1.42 16 42 H 0.05 0.83 8.02 -2.39 -0.02 0.81 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 45 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 47 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 48 H 0.03 0.78 8.08 -2.39 -0.02 0.76 16 Total: -1.00 -67.43 380.49 0.80 -66.63 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.14 Total: 22.38 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.50 Total: -7.93 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -6.24 Total: -99.08 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.43 kcal Total: -67.43 0.80 -66.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194630060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.879 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds