Wall clock time and date at job start Tue Mar 31 2020 17:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47109 * 2 1 4 4 C 1.50699 * 109.47327 * 240.00071 * 2 1 3 5 5 O 1.21280 * 119.99765 * 268.06915 * 4 2 1 6 6 N 1.34773 * 120.00228 * 88.06874 * 4 2 1 7 7 C 1.46499 * 119.99912 * 354.63025 * 6 4 2 8 8 C 1.46507 * 119.99952 * 174.63238 * 6 4 2 9 9 C 1.50695 * 109.47036 * 90.00256 * 8 6 4 10 10 H 1.08002 * 120.00395 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99899 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99720 * 179.97438 * 11 9 8 13 13 Si 1.86791 * 120.00053 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47084 * 90.00026 * 13 11 9 15 15 H 1.48502 * 109.47355 * 210.00458 * 13 11 9 16 16 H 1.48498 * 109.47274 * 330.00331 * 13 11 9 17 17 N 1.46903 * 109.47206 * 120.00125 * 2 1 3 18 18 C 1.47896 * 111.00194 * 52.61909 * 17 2 1 19 19 C 1.53994 * 107.05761 * 145.84378 * 18 17 2 20 20 C 1.54602 * 105.13960 * 358.78108 * 19 18 17 21 21 H 1.08998 * 110.71946 * 96.57412 * 20 19 18 22 22 C 1.50693 * 110.72085 * 219.68171 * 20 19 18 23 23 C 1.38268 * 119.98634 * 238.54249 * 22 20 19 24 24 C 1.38227 * 120.05514 * 180.25537 * 23 22 20 25 25 C 1.38223 * 120.01947 * 359.45121 * 24 23 22 26 26 C 1.38438 * 119.97821 * 0.55154 * 25 24 23 27 27 F 1.35100 * 120.02923 * 179.70734 * 26 25 24 28 28 C 1.38171 * 119.99185 * 58.52653 * 22 20 19 29 29 C 1.48532 * 111.00157 * 170.02329 * 17 2 1 30 30 H 1.09004 * 109.47109 * 64.65502 * 1 2 3 31 31 H 1.08999 * 109.46920 * 184.65175 * 1 2 3 32 32 H 1.09000 * 109.47496 * 304.65059 * 1 2 3 33 33 H 1.09005 * 109.46944 * 94.59485 * 7 6 4 34 34 H 1.09003 * 109.47426 * 214.58738 * 7 6 4 35 35 H 1.08998 * 109.47416 * 334.59320 * 7 6 4 36 36 H 1.09000 * 109.46886 * 209.99778 * 8 6 4 37 37 H 1.08995 * 109.46795 * 330.00067 * 8 6 4 38 38 H 0.97006 * 119.99973 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.91625 * 26.49547 * 18 17 2 40 40 H 1.08998 * 109.92073 * 265.20246 * 18 17 2 41 41 H 1.08997 * 110.31030 * 239.86289 * 19 18 17 42 42 H 1.09001 * 110.30784 * 117.69457 * 19 18 17 43 43 H 1.07997 * 119.97358 * 359.97438 * 23 22 20 44 44 H 1.07992 * 119.99090 * 179.70111 * 24 23 22 45 45 H 1.08000 * 120.01107 * 180.27643 * 25 24 23 46 46 H 1.08000 * 120.01111 * 0.03691 * 28 22 20 47 47 H 1.08997 * 110.66879 * 81.84093 * 29 17 2 48 48 H 1.09003 * 110.66585 * 318.71151 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2678 -1.8994 -1.1905 6 7 2.2199 -0.0244 -2.3753 7 6 1.8252 1.3840 -2.4583 8 6 2.8185 -0.6872 -3.5367 9 6 1.7313 -1.3027 -4.3793 10 1 0.6978 -1.2099 -4.0796 11 6 2.0560 -1.9852 -5.5325 12 7 1.1072 -2.5228 -6.2676 13 14 3.8434 -2.1464 -6.0506 14 1 4.4223 -3.3773 -5.4550 15 1 3.9242 -2.2276 -7.5312 16 1 4.6045 -0.9623 -5.5776 17 7 2.0197 -0.6925 1.1994 18 6 1.4061 -2.0323 1.3256 19 6 2.4669 -2.9581 1.9492 20 6 3.7185 -2.0698 2.1359 21 1 3.7681 -1.6825 3.1535 22 6 4.9712 -2.8357 1.7971 23 6 5.9641 -2.9913 2.7467 24 6 7.1162 -3.6891 2.4358 25 6 7.2718 -4.2419 1.1786 26 6 6.2784 -4.0867 0.2269 27 9 6.4321 -4.6215 -1.0042 28 6 5.1272 -3.3826 0.5379 29 6 3.4847 -0.9239 1.1197 30 1 -0.3633 0.4399 -0.9288 31 1 -0.3633 -1.0243 0.0833 32 1 -0.3634 0.5843 0.8454 33 1 2.6852 2.0160 -2.2365 34 1 1.4643 1.6015 -3.4636 35 1 1.0328 1.5824 -1.7368 36 1 3.3674 0.0444 -4.1296 37 1 3.5011 -1.4666 -3.1983 38 1 1.3355 -3.0027 -7.0792 39 1 1.1209 -2.4043 0.3415 40 1 0.5312 -1.9805 1.9737 41 1 2.6881 -3.7868 1.2767 42 1 2.1222 -3.3333 2.9128 43 1 5.8415 -2.5635 3.7307 44 1 7.8931 -3.8059 3.1768 45 1 8.1700 -4.7908 0.9372 46 1 4.3517 -3.2606 -0.2038 47 1 4.0322 -0.0292 1.4161 48 1 3.7707 -1.2361 0.1153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264147922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:28 Heat of formation + Delta-G solvation = -37.250316 kcal Electronic energy + Delta-G solvation = -30212.756243 eV Core-core repulsion = 26182.485914 eV Total energy + Delta-G solvation = -4030.270329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.77391 -40.59586 -39.22822 -37.45073 -34.96066 -34.03161 -32.53019 -31.11067 -30.55089 -29.26288 -28.56414 -27.48707 -26.07199 -24.05372 -23.34900 -22.48019 -22.13118 -20.71343 -20.01834 -18.38268 -17.46703 -16.99337 -16.82488 -16.35503 -16.17349 -15.93814 -15.48524 -15.11679 -14.88176 -14.72550 -14.14716 -13.98324 -13.76516 -13.37757 -13.35877 -13.12106 -12.89434 -12.66666 -12.42732 -12.34729 -12.12596 -11.97287 -11.84783 -11.74206 -11.64433 -11.45115 -11.30099 -11.19239 -10.95311 -10.87310 -10.70691 -10.54545 -10.35960 -10.15162 -9.69540 -9.50784 -8.93622 -8.68741 -8.60743 -7.94870 -7.75008 -6.10768 -4.09489 1.09887 1.17101 3.17750 3.27799 3.33459 3.36648 3.50340 3.80549 3.99960 4.26714 4.37914 4.60374 4.66260 4.78200 4.86341 4.96339 5.07020 5.09814 5.22016 5.23210 5.24410 5.30877 5.38398 5.52007 5.55718 5.63645 5.74530 5.79684 5.81016 5.85538 5.91497 5.99732 6.03653 6.08334 6.12617 6.14141 6.17760 6.23739 6.25704 6.41572 6.54800 6.64495 6.86723 6.87570 6.93051 7.05484 7.27254 7.58389 8.17602 8.43826 8.85104 8.93342 9.49623 11.02583 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.004861 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.115820 B = 5758.360176 C = 7944.531549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 H 0.099 0.901 4 C 0.482 3.518 5 O -0.535 6.535 6 N -0.594 5.594 7 C 0.078 3.922 8 C 0.216 3.784 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.897 5.897 13 Si 0.873 3.127 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.267 1.267 17 N -0.491 5.491 18 C 0.024 3.976 19 C -0.116 4.116 20 C -0.049 4.049 21 H 0.090 0.910 22 C -0.042 4.042 23 C -0.130 4.130 24 C -0.094 4.094 25 C -0.163 4.163 26 C 0.101 3.899 27 F -0.138 7.138 28 C -0.144 4.144 29 C 0.030 3.970 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.147 0.853 47 H 0.077 0.923 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 4.274 19.778 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 H 0.117 0.883 4 C 0.268 3.732 5 O -0.414 6.414 6 N -0.325 5.325 7 C -0.066 4.066 8 C 0.095 3.905 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.700 3.300 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.191 1.191 17 N -0.214 5.214 18 C -0.104 4.104 19 C -0.154 4.154 20 C -0.068 4.068 21 H 0.108 0.892 22 C -0.042 4.042 23 C -0.148 4.148 24 C -0.112 4.112 25 C -0.182 4.182 26 C 0.082 3.918 27 F -0.116 7.116 28 C -0.163 4.163 29 C -0.098 4.098 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.165 0.835 47 H 0.095 0.905 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.987 3.870 19.994 21.530 hybrid contribution 1.116 -0.675 -1.566 2.038 sum 8.103 3.195 18.428 20.382 Atomic orbital electron populations 1.21809 0.92088 1.03425 1.02586 1.22025 0.97510 0.99101 0.87544 0.88265 1.21430 0.78807 0.87926 0.85028 1.90611 1.51783 1.14685 1.84279 1.47996 1.60460 1.11085 1.12997 1.21750 0.99182 0.82211 1.03416 1.19646 0.94637 0.93035 0.83190 1.21277 0.94377 1.34321 1.06511 0.90809 1.24842 0.97133 0.94745 0.96150 1.69893 1.32302 1.35925 1.15396 0.86898 0.85753 0.79404 0.77943 1.19837 1.20993 1.19143 1.65237 1.04560 1.18685 1.32966 1.23065 0.97056 0.87998 1.02256 1.22442 0.93877 0.98174 1.00883 1.21021 0.91340 0.94638 0.99793 0.89158 1.19635 0.95530 0.96478 0.92593 1.21096 0.93713 1.00517 0.99490 1.20925 0.97656 0.96983 0.95669 1.21126 0.99381 1.03720 0.93945 1.17771 0.95841 0.97416 0.80760 1.91533 1.95804 1.84013 1.40282 1.21332 0.97715 0.98741 0.98466 1.23515 0.89134 0.97454 0.99664 0.91421 0.91566 0.91129 0.93566 0.90544 0.91682 0.95368 0.94897 0.92558 0.89763 0.91193 0.90874 0.91385 0.85500 0.85252 0.85080 0.83514 0.90489 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.75 37.16 0.32 -1.51 16 2 C 0.05 0.74 2.16 -68.87 -0.15 0.59 16 3 H 0.10 1.26 6.92 -51.93 -0.36 0.90 16 4 C 0.48 9.24 5.42 -10.99 -0.06 9.18 16 5 O -0.54 -12.00 11.89 5.56 0.07 -11.93 16 6 N -0.59 -11.87 2.86 -182.95 -0.52 -12.40 16 7 C 0.08 1.17 9.89 59.85 0.59 1.77 16 8 C 0.22 5.24 4.21 -5.19 -0.02 5.22 16 9 C -0.53 -15.07 9.94 -34.44 -0.34 -15.42 16 10 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 12 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 13 Si 0.87 21.90 27.47 -169.99 -4.67 17.23 16 14 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 17 N -0.49 -6.80 5.38 -223.89 -1.20 -8.01 16 18 C 0.02 0.33 4.61 -2.76 -0.01 0.32 16 19 C -0.12 -1.49 6.41 -25.37 -0.16 -1.65 16 20 C -0.05 -0.59 3.28 -89.91 -0.30 -0.89 16 21 H 0.09 0.93 7.95 -51.93 -0.41 0.51 16 22 C -0.04 -0.53 4.93 -104.64 -0.52 -1.04 16 23 C -0.13 -1.34 9.68 -39.57 -0.38 -1.72 16 24 C -0.09 -0.93 10.04 -39.59 -0.40 -1.32 16 25 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 26 C 0.10 1.51 7.30 -39.42 -0.29 1.22 16 27 F -0.14 -2.35 17.27 2.25 0.04 -2.31 16 28 C -0.14 -2.19 8.13 -39.51 -0.32 -2.51 16 29 C 0.03 0.42 5.56 -1.90 -0.01 0.41 16 30 H 0.07 0.88 6.95 -51.93 -0.36 0.52 16 31 H 0.07 0.93 6.46 -51.93 -0.34 0.60 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.06 0.80 5.16 -51.93 -0.27 0.53 16 36 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 37 H 0.03 0.86 6.93 -51.93 -0.36 0.50 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.08 1.47 4.93 -51.93 -0.26 1.22 16 40 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 41 H 0.07 1.07 7.05 -51.93 -0.37 0.70 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.13 0.99 7.98 -52.49 -0.42 0.57 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.15 2.65 7.09 -52.49 -0.37 2.28 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.07 1.23 4.15 -51.93 -0.22 1.01 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -33.22 375.37 -9.46 -42.68 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.06 Total: 3.68 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.54 Total: -7.60 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.95 Total: -47.40 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.22 -9.46 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264147922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.426 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds