Wall clock time and date at job start Tue Mar 31 2020 17:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47109 * 2 1 4 4 C 1.50699 * 109.47327 * 240.00071 * 2 1 3 5 5 O 1.21280 * 119.99765 * 268.06915 * 4 2 1 6 6 N 1.34773 * 120.00228 * 88.06874 * 4 2 1 7 7 C 1.46499 * 119.99912 * 354.63025 * 6 4 2 8 8 C 1.46507 * 119.99952 * 174.63238 * 6 4 2 9 9 C 1.50695 * 109.47036 * 90.00256 * 8 6 4 10 10 H 1.08002 * 120.00395 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99899 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99720 * 179.97438 * 11 9 8 13 13 Si 1.86791 * 120.00053 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47084 * 90.00026 * 13 11 9 15 15 H 1.48502 * 109.47355 * 210.00458 * 13 11 9 16 16 H 1.48498 * 109.47274 * 330.00331 * 13 11 9 17 17 N 1.46903 * 109.47206 * 120.00125 * 2 1 3 18 18 C 1.47896 * 111.00194 * 52.61909 * 17 2 1 19 19 C 1.53994 * 107.05761 * 145.84378 * 18 17 2 20 20 C 1.54602 * 105.13960 * 358.78108 * 19 18 17 21 21 H 1.08998 * 110.71946 * 96.57412 * 20 19 18 22 22 C 1.50693 * 110.72085 * 219.68171 * 20 19 18 23 23 C 1.38268 * 119.98634 * 238.54249 * 22 20 19 24 24 C 1.38227 * 120.05514 * 180.25537 * 23 22 20 25 25 C 1.38223 * 120.01947 * 359.45121 * 24 23 22 26 26 C 1.38438 * 119.97821 * 0.55154 * 25 24 23 27 27 F 1.35100 * 120.02923 * 179.70734 * 26 25 24 28 28 C 1.38171 * 119.99185 * 58.52653 * 22 20 19 29 29 C 1.48532 * 111.00157 * 170.02329 * 17 2 1 30 30 H 1.09004 * 109.47109 * 64.65502 * 1 2 3 31 31 H 1.08999 * 109.46920 * 184.65175 * 1 2 3 32 32 H 1.09000 * 109.47496 * 304.65059 * 1 2 3 33 33 H 1.09005 * 109.46944 * 94.59485 * 7 6 4 34 34 H 1.09003 * 109.47426 * 214.58738 * 7 6 4 35 35 H 1.08998 * 109.47416 * 334.59320 * 7 6 4 36 36 H 1.09000 * 109.46886 * 209.99778 * 8 6 4 37 37 H 1.08995 * 109.46795 * 330.00067 * 8 6 4 38 38 H 0.97006 * 119.99973 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.91625 * 26.49547 * 18 17 2 40 40 H 1.08998 * 109.92073 * 265.20246 * 18 17 2 41 41 H 1.08997 * 110.31030 * 239.86289 * 19 18 17 42 42 H 1.09001 * 110.30784 * 117.69457 * 19 18 17 43 43 H 1.07997 * 119.97358 * 359.97438 * 23 22 20 44 44 H 1.07992 * 119.99090 * 179.70111 * 24 23 22 45 45 H 1.08000 * 120.01107 * 180.27643 * 25 24 23 46 46 H 1.08000 * 120.01111 * 0.03691 * 28 22 20 47 47 H 1.08997 * 110.66879 * 81.84093 * 29 17 2 48 48 H 1.09003 * 110.66585 * 318.71151 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2678 -1.8994 -1.1905 6 7 2.2199 -0.0244 -2.3753 7 6 1.8252 1.3840 -2.4583 8 6 2.8185 -0.6872 -3.5367 9 6 1.7313 -1.3027 -4.3793 10 1 0.6978 -1.2099 -4.0796 11 6 2.0560 -1.9852 -5.5325 12 7 1.1072 -2.5228 -6.2676 13 14 3.8434 -2.1464 -6.0506 14 1 4.4223 -3.3773 -5.4550 15 1 3.9242 -2.2276 -7.5312 16 1 4.6045 -0.9623 -5.5776 17 7 2.0197 -0.6925 1.1994 18 6 1.4061 -2.0323 1.3256 19 6 2.4669 -2.9581 1.9492 20 6 3.7185 -2.0698 2.1359 21 1 3.7681 -1.6825 3.1535 22 6 4.9712 -2.8357 1.7971 23 6 5.9641 -2.9913 2.7467 24 6 7.1162 -3.6891 2.4358 25 6 7.2718 -4.2419 1.1786 26 6 6.2784 -4.0867 0.2269 27 9 6.4321 -4.6215 -1.0042 28 6 5.1272 -3.3826 0.5379 29 6 3.4847 -0.9239 1.1197 30 1 -0.3633 0.4399 -0.9288 31 1 -0.3633 -1.0243 0.0833 32 1 -0.3634 0.5843 0.8454 33 1 2.6852 2.0160 -2.2365 34 1 1.4643 1.6015 -3.4636 35 1 1.0328 1.5824 -1.7368 36 1 3.3674 0.0444 -4.1296 37 1 3.5011 -1.4666 -3.1983 38 1 1.3355 -3.0027 -7.0792 39 1 1.1209 -2.4043 0.3415 40 1 0.5312 -1.9805 1.9737 41 1 2.6881 -3.7868 1.2767 42 1 2.1222 -3.3333 2.9128 43 1 5.8415 -2.5635 3.7307 44 1 7.8931 -3.8059 3.1768 45 1 8.1700 -4.7908 0.9372 46 1 4.3517 -3.2606 -0.2038 47 1 4.0322 -0.0292 1.4161 48 1 3.7707 -1.2361 0.1153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264147922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:27 Heat of formation + Delta-G solvation = -59.622918 kcal Electronic energy + Delta-G solvation = -30213.726391 eV Core-core repulsion = 26182.485914 eV Total energy + Delta-G solvation = -4031.240477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.98298 -41.85841 -40.32888 -38.67332 -36.59792 -35.25701 -34.60384 -32.22294 -31.51242 -30.53079 -30.24527 -28.55513 -27.47299 -25.61133 -24.38147 -23.82961 -23.31832 -22.03218 -21.05758 -19.81129 -19.20443 -18.56312 -18.19397 -17.52832 -17.25028 -17.08034 -16.69257 -16.58880 -16.41196 -16.07017 -15.75240 -15.21019 -14.89041 -14.72376 -14.54626 -14.50774 -14.22703 -13.97093 -13.74852 -13.66292 -13.43540 -13.32943 -13.22660 -13.08290 -12.74250 -12.67691 -12.61570 -12.51091 -12.34622 -12.21054 -12.11780 -11.97766 -11.81700 -11.69394 -11.44949 -11.04015 -10.90375 -9.91866 -9.64957 -9.41839 -9.25773 -8.41080 -6.44964 0.15402 0.21603 1.22820 1.28095 1.34797 1.70897 2.22352 2.30630 2.57419 2.88682 2.93523 3.25206 3.61295 3.62594 3.73295 3.81226 3.92028 4.07237 4.14783 4.18560 4.26095 4.29550 4.34000 4.40838 4.51331 4.59504 4.61338 4.68611 4.72846 4.79685 4.81377 4.86352 4.90048 4.93647 4.99333 5.04738 5.05603 5.12526 5.18753 5.20184 5.30084 5.36726 5.39566 5.57490 5.59418 5.79103 5.86324 5.94751 6.17507 6.55866 6.66553 7.15661 7.37423 8.75965 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.004861 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.115820 B = 5758.360176 C = 7944.531549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.061 3.939 3 H 0.129 0.871 4 C 0.472 3.528 5 O -0.578 6.578 6 N -0.607 5.607 7 C 0.072 3.928 8 C 0.227 3.773 9 C -0.530 4.530 10 H 0.029 0.971 11 C 0.015 3.985 12 N -0.943 5.943 13 Si 0.940 3.060 14 H -0.284 1.284 15 H -0.270 1.270 16 H -0.240 1.240 17 N -0.475 5.475 18 C 0.025 3.975 19 C -0.115 4.115 20 C -0.040 4.040 21 H 0.126 0.874 22 C -0.048 4.048 23 C -0.115 4.115 24 C -0.081 4.081 25 C -0.159 4.159 26 C 0.062 3.938 27 F -0.163 7.163 28 C -0.167 4.167 29 C 0.026 3.974 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.009 0.991 38 H 0.268 0.732 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.040 0.960 42 H 0.096 0.904 43 H 0.168 0.832 44 H 0.174 0.826 45 H 0.151 0.849 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.277 6.587 23.833 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 H 0.147 0.853 4 C 0.260 3.740 5 O -0.458 6.458 6 N -0.338 5.338 7 C -0.069 4.069 8 C 0.104 3.896 9 C -0.569 4.569 10 H 0.048 0.952 11 C -0.183 4.183 12 N -0.583 5.583 13 Si 0.763 3.237 14 H -0.210 1.210 15 H -0.194 1.194 16 H -0.163 1.163 17 N -0.197 5.197 18 C -0.103 4.103 19 C -0.153 4.153 20 C -0.058 4.058 21 H 0.144 0.856 22 C -0.049 4.049 23 C -0.133 4.133 24 C -0.099 4.099 25 C -0.177 4.177 26 C 0.043 3.957 27 F -0.142 7.142 28 C -0.186 4.186 29 C -0.102 4.102 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.186 0.814 44 H 0.191 0.809 45 H 0.169 0.831 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.211 6.233 24.067 26.513 hybrid contribution 0.333 -1.431 -2.757 3.124 sum 9.544 4.802 21.310 23.839 Atomic orbital electron populations 1.21820 0.90843 1.02901 1.03939 1.22165 0.98342 0.99733 0.84964 0.85307 1.22502 0.77712 0.87688 0.86116 1.90617 1.53140 1.16951 1.85097 1.48127 1.60645 1.13068 1.11973 1.22035 1.01496 0.79617 1.03798 1.19232 0.93038 0.92938 0.84356 1.21507 0.93594 1.34572 1.07177 0.95236 1.25761 1.01978 0.94326 0.96245 1.70035 1.34840 1.37204 1.16216 0.85832 0.79981 0.79757 0.78089 1.20991 1.19448 1.16319 1.65342 1.04581 1.18084 1.31708 1.23016 0.98312 0.88484 1.00468 1.22419 0.94338 0.97237 1.01265 1.21074 0.90471 0.93490 1.00795 0.85577 1.19753 0.96700 0.96529 0.91880 1.21548 0.92456 0.99044 1.00207 1.21457 0.98336 0.94842 0.95241 1.21437 0.98861 1.03449 0.93981 1.18215 0.97349 0.99252 0.80912 1.91454 1.96020 1.84665 1.42082 1.21118 0.97182 1.01075 0.99229 1.23545 0.89176 0.99040 0.98397 0.91718 0.93490 0.87615 0.90320 0.91742 0.88753 0.93655 0.97327 0.92259 0.94094 0.89061 0.94157 0.88532 0.81433 0.80861 0.83129 0.88219 0.88355 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.75 71.98 0.63 -2.77 16 2 C 0.06 1.68 2.16 44.17 0.10 1.78 16 3 H 0.13 2.84 6.92 -2.38 -0.02 2.83 16 4 C 0.47 18.81 5.42 87.66 0.48 19.29 16 5 O -0.58 -28.20 11.89 -3.03 -0.04 -28.23 16 6 N -0.61 -24.85 2.86 -851.13 -2.43 -27.28 16 7 C 0.07 2.08 9.89 127.77 1.26 3.34 16 8 C 0.23 11.46 4.21 85.63 0.36 11.82 16 9 C -0.53 -32.06 9.94 25.60 0.25 -31.81 16 10 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 11 C 0.02 0.93 5.47 84.66 0.46 1.39 16 12 N -0.94 -61.12 13.96 21.45 0.30 -60.82 16 13 Si 0.94 46.71 27.47 68.60 1.88 48.59 16 14 H -0.28 -14.53 7.11 99.48 0.71 -13.83 16 15 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.24 -10.79 6.54 99.48 0.65 -10.14 16 17 N -0.47 -12.46 5.38 -862.26 -4.64 -17.10 16 18 C 0.02 0.71 4.61 86.45 0.40 1.10 16 19 C -0.11 -2.92 6.41 31.48 0.20 -2.72 16 20 C -0.04 -0.88 3.28 -10.34 -0.03 -0.92 16 21 H 0.13 1.95 7.95 -2.39 -0.02 1.93 16 22 C -0.05 -1.16 4.93 -19.88 -0.10 -1.26 16 23 C -0.11 -1.89 9.68 22.27 0.22 -1.67 16 24 C -0.08 -1.26 10.04 22.26 0.22 -1.03 16 25 C -0.16 -3.49 10.03 22.31 0.22 -3.26 16 26 C 0.06 1.94 7.30 22.38 0.16 2.11 16 27 F -0.16 -6.11 17.27 44.97 0.78 -5.33 16 28 C -0.17 -5.48 8.13 22.31 0.18 -5.30 16 29 C 0.03 0.70 5.56 86.65 0.48 1.18 16 30 H 0.06 1.63 6.95 -2.38 -0.02 1.62 16 31 H 0.05 1.34 6.46 -2.39 -0.02 1.33 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.06 2.00 8.11 -2.39 -0.02 1.99 16 35 H 0.09 2.12 5.16 -2.39 -0.01 2.11 16 36 H 0.05 2.12 7.13 -2.39 -0.02 2.11 16 37 H 0.01 0.48 6.93 -2.39 -0.02 0.46 16 38 H 0.27 16.19 8.31 -92.70 -0.77 15.42 16 39 H 0.04 1.55 4.93 -2.39 -0.01 1.53 16 40 H 0.09 2.17 8.13 -2.39 -0.02 2.15 16 41 H 0.04 1.28 7.05 -2.39 -0.02 1.26 16 42 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.17 1.46 7.98 -2.91 -0.02 1.44 16 44 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 46 H 0.10 4.17 7.09 -2.91 -0.02 4.15 16 47 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.03 1.17 4.15 -2.39 -0.01 1.16 16 Total: -1.00 -82.18 375.37 2.26 -79.91 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.91 Total: 18.98 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.50 Total: -8.73 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -6.77 Total: -105.20 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.04 Total: -28.23 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.78 Total: -5.33 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.88 Total: 48.59 kcal Total: -82.18 2.26 -79.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264147922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.289 kcal (2) G-P(sol) polarization free energy of solvation -82.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds