Wall clock time and date at job start Tue Mar 31 2020 18:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47125 * 2 1 4 4 C 1.46497 * 119.99954 * 270.00152 * 3 2 1 5 5 C 1.50703 * 109.47176 * 269.99848 * 4 3 2 6 6 H 1.08001 * 119.99425 * 0.02562 * 5 4 3 7 7 C 1.37865 * 120.00484 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00264 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00462 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46882 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47280 * 119.99847 * 9 7 5 12 12 H 1.48493 * 109.47464 * 240.00428 * 9 7 5 13 13 C 1.34778 * 120.00050 * 89.99719 * 3 2 1 14 14 O 1.21280 * 119.99818 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99910 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46694 * 179.97438 * 15 13 3 17 17 C 1.48528 * 111.00568 * 307.40151 * 16 15 13 18 18 C 1.55094 * 103.28538 * 200.33296 * 17 16 15 19 19 C 1.54591 * 102.84677 * 37.30576 * 18 17 16 20 20 H 1.09002 * 110.31140 * 97.11529 * 19 18 17 21 21 C 1.50702 * 110.31055 * 219.18337 * 19 18 17 22 22 C 1.38269 * 119.98589 * 57.44296 * 21 19 18 23 23 C 1.38223 * 120.05333 * 180.27465 * 22 21 19 24 24 C 1.38224 * 120.02199 * 359.76975 * 23 22 21 25 25 C 1.38437 * 119.97527 * 359.97438 * 24 23 22 26 26 F 1.35095 * 120.02529 * 180.02562 * 25 24 23 27 27 C 1.38172 * 119.98969 * 237.20483 * 21 19 18 28 28 C 1.47900 * 110.99615 * 189.99930 * 16 15 13 29 29 H 1.09004 * 109.46675 * 60.00186 * 1 2 3 30 30 H 1.09002 * 109.46654 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46916 * 300.00330 * 1 2 3 32 32 H 1.08994 * 109.47333 * 240.00003 * 2 1 3 33 33 H 1.09004 * 109.47087 * 119.99470 * 2 1 3 34 34 H 1.09009 * 109.47114 * 29.99043 * 4 3 2 35 35 H 1.08994 * 109.47725 * 149.99907 * 4 3 2 36 36 H 0.96999 * 120.00607 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.46540 * 60.00449 * 15 13 3 38 38 H 1.08996 * 109.47564 * 300.00196 * 15 13 3 39 39 H 1.09007 * 110.66687 * 318.71297 * 17 16 15 40 40 H 1.09003 * 110.66808 * 81.84345 * 17 16 15 41 41 H 1.09000 * 110.71188 * 278.99146 * 18 17 16 42 42 H 1.09007 * 110.80940 * 155.65858 * 18 17 16 43 43 H 1.08004 * 119.97350 * 0.02562 * 22 21 19 44 44 H 1.07994 * 119.98872 * 179.74471 * 23 22 21 45 45 H 1.08003 * 120.00681 * 179.97438 * 24 23 22 46 46 H 1.08002 * 120.01574 * 359.97438 * 27 21 19 47 47 H 1.08998 * 109.91770 * 26.50263 * 28 16 15 48 48 H 1.08998 * 109.92121 * 265.19736 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9136 2.0967 -3.4168 10 1 6.6012 1.2415 -2.4162 11 1 5.9216 1.4170 -4.7372 12 1 6.6205 3.3981 -3.5256 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3101 2.2063 3.5888 17 6 3.6777 2.7678 3.4462 18 6 4.0290 3.2209 4.8873 19 6 3.3928 2.1149 5.7601 20 1 4.1416 1.3719 6.0345 21 6 2.7749 2.7150 6.9967 22 6 1.8028 3.6913 6.8794 23 6 1.2392 4.2467 8.0127 24 6 1.6437 3.8233 9.2648 25 6 2.6131 2.8422 9.3834 26 9 3.0088 2.4272 10.6067 27 6 3.1766 2.2861 8.2472 28 6 2.3058 1.4767 4.8753 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6752 3.5162 -4.4440 37 1 2.6211 0.4188 2.5302 38 1 0.9431 1.0126 2.5299 39 1 4.3742 2.0021 3.1045 40 1 3.6751 3.6186 2.7649 41 1 3.5816 4.1904 5.1064 42 1 5.1091 3.2520 5.0309 43 1 1.4864 4.0229 5.9014 44 1 0.4830 5.0120 7.9199 45 1 1.2035 4.2577 10.1502 46 1 3.9329 1.5205 8.3386 47 1 2.5351 0.4246 4.7063 48 1 1.3318 1.5750 5.3548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264227745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:46 Heat of formation + Delta-G solvation = -46.532465 kcal Electronic energy + Delta-G solvation = -28612.362312 eV Core-core repulsion = 24581.689479 eV Total energy + Delta-G solvation = -4030.672833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.12222 -40.22950 -39.19933 -37.68254 -35.28883 -33.36823 -32.74432 -31.01296 -30.29681 -30.10353 -28.43068 -27.64509 -25.79815 -23.13555 -23.04863 -22.96513 -22.39373 -21.08141 -20.24690 -18.34603 -17.54204 -16.82214 -16.55081 -16.34017 -16.27902 -15.94504 -15.81689 -15.24542 -15.01294 -14.77995 -14.25860 -14.07295 -13.75990 -13.62493 -13.37128 -13.36732 -12.95207 -12.73650 -12.46547 -12.41729 -12.05011 -12.00873 -11.79917 -11.73220 -11.58596 -11.49004 -11.29861 -11.12074 -10.96218 -10.83768 -10.72709 -10.59396 -10.53736 -10.09999 -9.62928 -9.21326 -8.91752 -8.72288 -8.45352 -8.24461 -7.65997 -6.05805 -4.10578 0.92039 0.96352 3.27769 3.32153 3.35010 3.37709 3.43389 3.71831 3.94639 4.23268 4.33762 4.43086 4.49756 4.69292 4.73013 4.84800 5.01156 5.04350 5.11512 5.15080 5.26087 5.28854 5.34411 5.42223 5.48136 5.53606 5.59000 5.62994 5.66485 5.78434 5.84200 5.86313 5.89265 5.94417 6.02337 6.11800 6.15134 6.21744 6.33558 6.47291 6.49245 6.66867 6.94656 6.99305 7.14261 7.45175 7.55741 7.90960 8.22345 8.42590 8.89501 9.11208 9.54731 11.02189 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.002353 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.675504 B =11896.773787 C =12554.327304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.527 6.527 15 C 0.027 3.973 16 N -0.498 5.498 17 C 0.033 3.967 18 C -0.117 4.117 19 C -0.063 4.063 20 H 0.084 0.916 21 C -0.039 4.039 22 C -0.117 4.117 23 C -0.090 4.090 24 C -0.161 4.161 25 C 0.094 3.906 26 F -0.144 7.144 27 C -0.154 4.154 28 C 0.043 3.957 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.046 0.954 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 -4.514 22.196 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.404 6.404 15 C -0.105 4.105 16 N -0.222 5.222 17 C -0.094 4.094 18 C -0.155 4.155 19 C -0.082 4.082 20 H 0.102 0.898 21 C -0.039 4.039 22 C -0.135 4.135 23 C -0.108 4.108 24 C -0.180 4.180 25 C 0.075 3.925 26 F -0.122 7.122 27 C -0.172 4.172 28 C -0.086 4.086 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.065 0.935 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.842 -3.414 22.025 22.808 hybrid contribution 1.579 -1.134 -0.153 1.950 sum -3.263 -4.548 21.872 22.577 Atomic orbital electron populations 1.22223 0.96731 1.01378 1.02423 1.21412 0.93577 0.84284 1.02525 1.48254 1.63886 1.13182 1.07700 1.19260 0.96182 0.93679 0.78083 1.21449 0.96923 1.31749 1.06175 0.92579 1.24932 0.97793 0.94975 0.96429 1.69941 1.35559 1.33485 1.14331 0.86465 0.84718 0.78042 0.78308 1.19882 1.20988 1.20865 1.20088 0.78765 0.87074 0.84835 1.90592 1.45325 1.17834 1.86653 1.22334 1.02587 0.94631 0.90908 1.64679 1.27589 1.29910 1.00062 1.23582 0.87607 1.01573 0.96653 1.22735 1.00227 0.98194 0.94325 1.21090 0.97012 0.97900 0.92209 0.89794 1.19661 0.95438 0.95462 0.93337 1.21277 0.96248 0.96285 0.99667 1.21051 0.99198 0.99174 0.91341 1.21140 0.98874 0.98691 0.99301 1.17678 0.97593 0.97331 0.79882 1.91489 1.89896 1.89350 1.41486 1.21051 1.02552 1.02502 0.91131 1.23032 0.99009 0.95960 0.90550 0.91989 0.92223 0.92984 0.89983 0.91990 0.95081 0.93836 0.92775 0.92476 0.88455 0.94269 0.86236 0.90253 0.90925 0.84273 0.84955 0.85043 0.84982 0.93523 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.25 2.46 -175.05 -0.43 -12.68 16 4 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 5 C -0.52 -14.60 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.51 10.13 7.38 -10.98 -0.08 10.05 16 14 O -0.53 -12.60 13.10 5.56 0.07 -12.52 16 15 C 0.03 0.39 4.07 -4.97 -0.02 0.37 16 16 N -0.50 -7.02 5.26 -231.79 -1.22 -8.24 16 17 C 0.03 0.49 5.30 -1.82 -0.01 0.48 16 18 C -0.12 -1.34 6.51 -24.79 -0.16 -1.50 16 19 C -0.06 -0.63 3.21 -90.41 -0.29 -0.92 16 20 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 21 C -0.04 -0.37 4.72 -104.63 -0.49 -0.87 16 22 C -0.12 -1.11 8.11 -39.58 -0.32 -1.43 16 23 C -0.09 -0.75 10.04 -39.59 -0.40 -1.15 16 24 C -0.16 -1.40 10.03 -39.51 -0.40 -1.80 16 25 C 0.09 0.93 7.30 -39.42 -0.29 0.65 16 26 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 27 C -0.15 -1.46 9.66 -39.52 -0.38 -1.84 16 28 C 0.04 0.46 6.12 -2.75 -0.02 0.44 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 34 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.06 0.76 7.07 -51.93 -0.37 0.40 16 38 H 0.10 1.25 7.18 -51.93 -0.37 0.88 16 39 H 0.04 0.61 8.02 -51.93 -0.42 0.19 16 40 H 0.12 2.21 5.97 -51.93 -0.31 1.90 16 41 H 0.08 0.92 6.96 -51.93 -0.36 0.56 16 42 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 43 H 0.14 1.39 7.79 -52.48 -0.41 0.98 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 46 H 0.13 1.07 7.97 -52.49 -0.42 0.66 16 47 H 0.05 0.47 7.57 -51.93 -0.39 0.07 16 48 H 0.08 0.85 7.30 -51.93 -0.38 0.47 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -31.91 388.51 -10.35 -42.25 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.43 Total: 0.51 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.95 Total: -4.70 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.91 Total: -46.53 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.52 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.91 -10.35 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264227745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.280 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds