Wall clock time and date at job start Tue Mar 31 2020 18:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47125 * 2 1 4 4 C 1.46497 * 119.99954 * 270.00152 * 3 2 1 5 5 C 1.50703 * 109.47176 * 269.99848 * 4 3 2 6 6 H 1.08001 * 119.99425 * 0.02562 * 5 4 3 7 7 C 1.37865 * 120.00484 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00264 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00462 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46882 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47280 * 119.99847 * 9 7 5 12 12 H 1.48493 * 109.47464 * 240.00428 * 9 7 5 13 13 C 1.34778 * 120.00050 * 89.99719 * 3 2 1 14 14 O 1.21280 * 119.99818 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99910 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46694 * 179.97438 * 15 13 3 17 17 C 1.48528 * 111.00568 * 307.40151 * 16 15 13 18 18 C 1.55094 * 103.28538 * 200.33296 * 17 16 15 19 19 C 1.54591 * 102.84677 * 37.30576 * 18 17 16 20 20 H 1.09002 * 110.31140 * 97.11529 * 19 18 17 21 21 C 1.50702 * 110.31055 * 219.18337 * 19 18 17 22 22 C 1.38269 * 119.98589 * 57.44296 * 21 19 18 23 23 C 1.38223 * 120.05333 * 180.27465 * 22 21 19 24 24 C 1.38224 * 120.02199 * 359.76975 * 23 22 21 25 25 C 1.38437 * 119.97527 * 359.97438 * 24 23 22 26 26 F 1.35095 * 120.02529 * 180.02562 * 25 24 23 27 27 C 1.38172 * 119.98969 * 237.20483 * 21 19 18 28 28 C 1.47900 * 110.99615 * 189.99930 * 16 15 13 29 29 H 1.09004 * 109.46675 * 60.00186 * 1 2 3 30 30 H 1.09002 * 109.46654 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46916 * 300.00330 * 1 2 3 32 32 H 1.08994 * 109.47333 * 240.00003 * 2 1 3 33 33 H 1.09004 * 109.47087 * 119.99470 * 2 1 3 34 34 H 1.09009 * 109.47114 * 29.99043 * 4 3 2 35 35 H 1.08994 * 109.47725 * 149.99907 * 4 3 2 36 36 H 0.96999 * 120.00607 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.46540 * 60.00449 * 15 13 3 38 38 H 1.08996 * 109.47564 * 300.00196 * 15 13 3 39 39 H 1.09007 * 110.66687 * 318.71297 * 17 16 15 40 40 H 1.09003 * 110.66808 * 81.84345 * 17 16 15 41 41 H 1.09000 * 110.71188 * 278.99146 * 18 17 16 42 42 H 1.09007 * 110.80940 * 155.65858 * 18 17 16 43 43 H 1.08004 * 119.97350 * 0.02562 * 22 21 19 44 44 H 1.07994 * 119.98872 * 179.74471 * 23 22 21 45 45 H 1.08003 * 120.00681 * 179.97438 * 24 23 22 46 46 H 1.08002 * 120.01574 * 359.97438 * 27 21 19 47 47 H 1.08998 * 109.91770 * 26.50263 * 28 16 15 48 48 H 1.08998 * 109.92121 * 265.19736 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9136 2.0967 -3.4168 10 1 6.6012 1.2415 -2.4162 11 1 5.9216 1.4170 -4.7372 12 1 6.6205 3.3981 -3.5256 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3101 2.2063 3.5888 17 6 3.6777 2.7678 3.4462 18 6 4.0290 3.2209 4.8873 19 6 3.3928 2.1149 5.7601 20 1 4.1416 1.3719 6.0345 21 6 2.7749 2.7150 6.9967 22 6 1.8028 3.6913 6.8794 23 6 1.2392 4.2467 8.0127 24 6 1.6437 3.8233 9.2648 25 6 2.6131 2.8422 9.3834 26 9 3.0088 2.4272 10.6067 27 6 3.1766 2.2861 8.2472 28 6 2.3058 1.4767 4.8753 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6752 3.5162 -4.4440 37 1 2.6211 0.4188 2.5302 38 1 0.9431 1.0126 2.5299 39 1 4.3742 2.0021 3.1045 40 1 3.6751 3.6186 2.7649 41 1 3.5816 4.1904 5.1064 42 1 5.1091 3.2520 5.0309 43 1 1.4864 4.0229 5.9014 44 1 0.4830 5.0120 7.9199 45 1 1.2035 4.2577 10.1502 46 1 3.9329 1.5205 8.3386 47 1 2.5351 0.4246 4.7063 48 1 1.3318 1.5750 5.3548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264227745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:45 Heat of formation + Delta-G solvation = -65.329329 kcal Electronic energy + Delta-G solvation = -28613.177405 eV Core-core repulsion = 24581.689479 eV Total energy + Delta-G solvation = -4031.487926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.87359 -41.29115 -40.39146 -38.72890 -36.88331 -34.96214 -34.18738 -31.85205 -31.56584 -31.14554 -29.61764 -29.02831 -27.25639 -24.80767 -24.07949 -23.73719 -23.55008 -22.25125 -21.06100 -19.85620 -18.62724 -18.28490 -17.93086 -17.60920 -17.17129 -17.00951 -16.59098 -16.54840 -16.34011 -16.13772 -15.74453 -15.03941 -14.93934 -14.64725 -14.50776 -14.32905 -14.26438 -13.88267 -13.75037 -13.59370 -13.31756 -13.21594 -13.11527 -12.97107 -12.70585 -12.67415 -12.54861 -12.43408 -12.36432 -12.24833 -12.13585 -11.89135 -11.71633 -11.60846 -11.52341 -10.65116 -10.38095 -9.87123 -9.56733 -9.41785 -9.32485 -8.22145 -6.36952 0.21045 0.28710 1.35354 1.37625 1.49105 1.87670 2.24951 2.41491 2.63417 3.07039 3.09736 3.23019 3.54907 3.68793 3.74075 3.89650 4.00631 4.09347 4.15723 4.26758 4.29864 4.36252 4.37821 4.39021 4.44550 4.49190 4.60930 4.66401 4.74443 4.92794 4.94347 4.95235 5.00253 5.06810 5.08343 5.16359 5.19514 5.19775 5.23590 5.27072 5.40570 5.43483 5.59763 5.62477 5.85446 5.90819 5.98484 6.02862 6.07533 6.71510 6.84645 7.29594 7.55206 8.84879 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.002353 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.675504 B =11896.773787 C =12554.327304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.495 3.505 14 O -0.577 6.577 15 C 0.041 3.959 16 N -0.513 5.513 17 C 0.035 3.965 18 C -0.109 4.109 19 C -0.054 4.054 20 H 0.102 0.898 21 C -0.044 4.044 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.160 4.160 25 C 0.077 3.923 26 F -0.151 7.151 27 C -0.154 4.154 28 C 0.045 3.955 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.019 0.981 35 H -0.004 1.004 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.153 0.847 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.065 0.935 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 -6.672 24.321 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.283 3.717 14 O -0.457 6.457 15 C -0.090 4.090 16 N -0.238 5.238 17 C -0.092 4.092 18 C -0.147 4.147 19 C -0.073 4.073 20 H 0.120 0.880 21 C -0.044 4.044 22 C -0.142 4.142 23 C -0.107 4.107 24 C -0.179 4.179 25 C 0.058 3.942 26 F -0.129 7.129 27 C -0.173 4.173 28 C -0.082 4.082 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.037 0.963 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.143 0.857 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.149 0.851 44 H 0.171 0.829 45 H 0.167 0.833 46 H 0.163 0.837 47 H 0.083 0.917 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.743 -5.620 24.175 25.269 hybrid contribution 1.479 -0.414 -0.797 1.730 sum -3.264 -6.034 23.379 24.364 Atomic orbital electron populations 1.22151 0.94570 1.03462 1.01691 1.21736 0.95330 0.81414 1.03765 1.48286 1.64167 1.15061 1.06204 1.18662 0.95167 0.91478 0.80436 1.21702 0.97824 1.31705 1.06350 0.93001 1.25856 1.02315 0.94571 0.96513 1.70062 1.37675 1.34325 1.14831 0.85382 0.79131 0.77974 0.78395 1.19078 1.19504 1.20821 1.21136 0.77418 0.86775 0.86330 1.90591 1.47302 1.20278 1.87555 1.22271 1.04585 0.94374 0.87742 1.64633 1.26993 1.30905 1.01225 1.23337 0.88229 0.99825 0.97842 1.22648 1.01054 0.98583 0.92401 1.21031 0.97022 0.97449 0.91785 0.88019 1.19604 0.95752 0.95818 0.93245 1.21325 0.96573 0.96569 0.99746 1.21280 0.99320 0.99294 0.90820 1.21384 0.98307 0.98117 1.00097 1.17902 0.98364 0.98097 0.79793 1.91471 1.90060 1.89516 1.41892 1.21171 1.02641 1.02655 0.90815 1.23086 0.99836 0.96549 0.88710 0.94424 0.88632 0.92039 0.91125 0.88317 0.96261 0.98632 0.92462 0.90153 0.85745 0.95185 0.90695 0.90791 0.89850 0.85100 0.82949 0.83335 0.83723 0.91693 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.95 5.93 86.38 0.51 3.46 16 3 N -0.61 -25.28 2.46 -826.13 -2.03 -27.31 16 4 C 0.26 14.27 5.16 85.63 0.44 14.72 16 5 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -56.48 13.29 21.44 0.28 -56.20 16 9 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.49 20.15 7.38 87.66 0.65 20.80 16 14 O -0.58 -29.20 13.10 -3.03 -0.04 -29.24 16 15 C 0.04 1.13 4.07 85.56 0.35 1.48 16 16 N -0.51 -13.86 5.26 -887.24 -4.67 -18.53 16 17 C 0.04 1.07 5.30 86.71 0.46 1.53 16 18 C -0.11 -2.41 6.51 31.85 0.21 -2.20 16 19 C -0.05 -0.95 3.21 -10.66 -0.03 -0.98 16 20 H 0.10 1.45 7.92 -2.39 -0.02 1.44 16 21 C -0.04 -0.76 4.72 -19.87 -0.09 -0.85 16 22 C -0.12 -2.16 8.11 22.27 0.18 -1.98 16 23 C -0.09 -1.32 10.04 22.26 0.22 -1.09 16 24 C -0.16 -2.45 10.03 22.31 0.22 -2.23 16 25 C 0.08 1.39 7.30 22.38 0.16 1.55 16 26 F -0.15 -2.97 17.27 44.97 0.78 -2.20 16 27 C -0.15 -2.58 9.66 22.31 0.22 -2.36 16 28 C 0.05 0.85 6.12 86.45 0.53 1.38 16 29 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.10 2.20 6.44 -2.39 -0.02 2.18 16 34 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 35 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.08 1.86 7.07 -2.39 -0.02 1.84 16 38 H 0.12 2.76 7.18 -2.39 -0.02 2.74 16 39 H 0.03 0.93 8.02 -2.38 -0.02 0.91 16 40 H 0.07 2.97 5.97 -2.39 -0.01 2.95 16 41 H 0.07 1.71 6.96 -2.39 -0.02 1.69 16 42 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.13 2.50 7.79 -2.91 -0.02 2.48 16 44 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 46 H 0.14 1.97 7.97 -2.91 -0.02 1.95 16 47 H 0.06 1.02 7.57 -2.39 -0.02 1.00 16 48 H 0.09 1.59 7.30 -2.39 -0.02 1.57 16 Total: -1.00 -73.87 388.51 2.76 -71.11 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.95 Total: 15.14 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.46 Total: 0.26 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -6.41 Total: -102.03 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.04 Total: -29.24 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.87 2.76 -71.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264227745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.780 kcal (2) G-P(sol) polarization free energy of solvation -73.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds