Wall clock time and date at job start Tue Mar 31 2020 17:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47224 * 2 1 4 4 C 1.50707 * 109.47303 * 239.99978 * 2 1 3 5 5 O 1.21279 * 120.00094 * 257.02340 * 4 2 1 6 6 N 1.34777 * 119.99744 * 77.01973 * 4 2 1 7 7 C 1.46503 * 120.00077 * 355.26856 * 6 4 2 8 8 C 1.46500 * 120.00065 * 175.26916 * 6 4 2 9 9 C 1.50695 * 109.47105 * 90.00007 * 8 6 4 10 10 H 1.08006 * 120.00073 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99790 * 180.02562 * 9 8 6 12 12 N 1.31510 * 120.00104 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99859 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47367 * 59.99877 * 13 11 9 15 15 H 1.48501 * 109.47086 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47182 * 300.00026 * 13 11 9 17 17 N 1.46905 * 109.47202 * 120.00129 * 2 1 3 18 18 C 1.48529 * 110.99938 * 303.63671 * 17 2 1 19 19 C 1.54932 * 103.22658 * 200.27581 * 18 17 2 20 20 C 1.54595 * 102.92218 * 37.41549 * 19 18 17 21 21 H 1.09005 * 110.30893 * 96.95561 * 20 19 18 22 22 C 1.50696 * 110.39465 * 219.08087 * 20 19 18 23 23 C 1.38248 * 119.97261 * 56.87815 * 22 20 19 24 24 C 1.38204 * 120.02539 * 179.76850 * 23 22 20 25 25 C 1.38462 * 119.97212 * 0.50809 * 24 23 22 26 26 F 1.35091 * 120.02490 * 179.76996 * 25 24 23 27 27 C 1.38459 * 119.94851 * 359.74312 * 25 24 23 28 28 C 1.38201 * 119.97582 * 0.02562 * 27 25 24 29 29 C 1.47899 * 111.00003 * 186.24154 * 17 2 1 30 30 H 1.08995 * 109.46888 * 306.60023 * 1 2 3 31 31 H 1.08998 * 109.47009 * 66.59875 * 1 2 3 32 32 H 1.09004 * 109.47073 * 186.59539 * 1 2 3 33 33 H 1.08994 * 109.47135 * 91.16143 * 7 6 4 34 34 H 1.09001 * 109.47436 * 211.16453 * 7 6 4 35 35 H 1.09001 * 109.47135 * 331.16724 * 7 6 4 36 36 H 1.08995 * 109.46880 * 210.00195 * 8 6 4 37 37 H 1.09001 * 109.46682 * 329.99833 * 8 6 4 38 38 H 0.97008 * 119.99790 * 179.97438 * 12 11 9 39 39 H 1.08995 * 110.67050 * 318.71580 * 18 17 2 40 40 H 1.09002 * 110.66656 * 81.67478 * 18 17 2 41 41 H 1.08995 * 110.72705 * 279.05562 * 19 18 17 42 42 H 1.09004 * 110.72232 * 155.77180 * 19 18 17 43 43 H 1.08001 * 119.98926 * 0.02562 * 23 22 20 44 44 H 1.08001 * 120.00976 * 180.25354 * 24 23 22 45 45 H 1.08002 * 120.01186 * 179.97438 * 27 25 24 46 46 H 1.08001 * 119.98718 * 180.02562 * 28 27 25 47 47 H 1.08991 * 109.91928 * 26.49055 * 29 17 2 48 48 H 1.09009 * 110.07915 * 265.28882 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4569 -1.8433 -1.1458 6 7 2.0098 -0.0868 -2.4251 7 6 1.4025 1.2409 -2.5469 8 6 2.5926 -0.7364 -3.6017 9 6 1.5379 -1.5597 -4.2950 10 1 0.5339 -1.5957 -3.8985 11 6 1.8548 -2.2677 -5.4348 12 7 3.0777 -2.2250 -5.9167 13 14 0.5475 -3.2888 -6.2938 14 1 -0.5696 -2.4073 -6.7181 15 1 1.1385 -3.9483 -7.4859 16 1 0.0345 -4.3233 -5.3600 17 7 2.0197 -0.6925 1.1994 18 6 1.4730 -0.0717 2.4330 19 6 2.4578 -0.5417 3.5329 20 6 3.8249 -0.5035 2.8120 21 1 4.3441 0.4288 3.0347 22 6 4.6687 -1.6822 3.2237 23 6 4.1912 -2.9679 3.0493 24 6 4.9661 -4.0499 3.4220 25 6 6.2168 -3.8455 3.9799 26 9 6.9732 -4.9023 4.3489 27 6 6.6918 -2.5573 4.1588 28 6 5.9171 -1.4770 3.7810 29 6 3.4904 -0.5836 1.3110 30 1 -0.3633 0.6127 0.8250 31 1 -0.3633 0.4081 -0.9431 32 1 -0.3633 -1.0209 0.1180 33 1 2.1637 2.0046 -2.3879 34 1 0.9758 1.3552 -3.5434 35 1 0.6162 1.3507 -1.8001 36 1 2.9693 0.0230 -4.2868 37 1 3.4125 -1.3838 -3.2905 38 1 3.3007 -2.7235 -6.7185 39 1 1.4776 1.0152 2.3513 40 1 0.4656 -0.4368 2.6335 41 1 2.2202 -1.5552 3.8559 42 1 2.4483 0.1460 4.3785 43 1 3.2140 -3.1269 2.6179 44 1 4.5945 -5.0542 3.2819 45 1 7.6670 -2.3968 4.5943 46 1 6.2875 -0.4721 3.9201 47 1 3.8355 0.3180 0.8051 48 1 3.9651 -1.4608 0.8712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268018506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:01 Heat of formation + Delta-G solvation = -41.591859 kcal Electronic energy + Delta-G solvation = -29086.461525 eV Core-core repulsion = 25056.002933 eV Total energy + Delta-G solvation = -4030.458592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.97353 -40.29434 -39.16661 -37.69407 -34.74312 -33.97797 -32.52974 -31.26915 -30.84932 -29.34736 -27.95551 -27.24058 -25.95602 -24.08189 -23.34377 -22.78376 -22.31115 -20.73565 -20.16047 -18.37080 -17.80346 -16.75497 -16.62785 -16.47701 -15.99644 -15.83185 -15.66884 -15.06542 -14.87954 -14.47451 -14.20112 -14.10977 -13.66849 -13.57190 -13.35334 -13.14606 -12.93697 -12.82736 -12.54184 -12.35334 -12.15782 -12.03622 -11.94644 -11.64551 -11.36750 -11.32290 -11.24982 -11.20529 -11.11573 -10.87712 -10.82808 -10.70832 -10.53456 -10.12411 -9.60961 -9.20524 -8.81143 -8.61538 -8.40922 -8.24302 -7.59629 -6.01689 -4.06151 1.01570 1.13223 3.33452 3.38101 3.40100 3.43895 3.47297 3.69678 4.15012 4.19462 4.40360 4.46576 4.50736 4.67727 4.75215 4.77906 5.03732 5.08662 5.15907 5.16479 5.24856 5.27556 5.31665 5.33025 5.42504 5.54702 5.57326 5.68963 5.74649 5.79072 5.83538 5.86442 5.91193 5.94552 5.98033 6.02746 6.14183 6.15669 6.23575 6.36949 6.45042 6.78688 6.91481 6.93787 7.15265 7.45199 7.58109 7.94844 8.26285 8.46195 8.93739 9.16767 9.58889 11.06325 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.003006 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.163180 B = 9313.742198 C =10805.509838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.057 3.943 3 H 0.057 0.943 4 C 0.508 3.492 5 O -0.518 6.518 6 N -0.605 5.605 7 C 0.076 3.924 8 C 0.249 3.751 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.490 5.490 18 C 0.034 3.966 19 C -0.114 4.114 20 C -0.059 4.059 21 H 0.083 0.917 22 C -0.080 4.080 23 C -0.073 4.073 24 C -0.151 4.151 25 C 0.090 3.910 26 F -0.144 7.144 27 C -0.156 4.156 28 C -0.090 4.090 29 C 0.046 3.954 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.043 0.957 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 7.875 21.637 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 H 0.074 0.926 4 C 0.293 3.707 5 O -0.393 6.393 6 N -0.339 5.339 7 C -0.068 4.068 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.215 5.215 18 C -0.094 4.094 19 C -0.152 4.152 20 C -0.078 4.078 21 H 0.101 0.899 22 C -0.081 4.081 23 C -0.091 4.091 24 C -0.169 4.169 25 C 0.071 3.929 26 F -0.122 7.122 27 C -0.175 4.175 28 C -0.108 4.108 29 C -0.082 4.082 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.147 0.853 47 H 0.061 0.939 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.816 6.608 21.444 22.454 hybrid contribution -0.227 0.197 -0.640 0.707 sum 0.589 6.805 20.805 21.897 Atomic orbital electron populations 1.21890 0.92439 1.03587 1.02310 1.21855 0.97195 0.95642 0.90855 0.92550 1.20050 0.79954 0.86833 0.83869 1.90671 1.45889 1.17311 1.85396 1.48149 1.58145 1.17722 1.09877 1.21807 0.97217 0.84742 1.03081 1.19239 0.94358 0.92759 0.80698 1.21390 0.96737 1.28725 1.09431 0.92538 1.24933 0.95563 0.96509 0.97111 1.69922 1.18355 1.42366 1.22873 0.86570 0.81556 0.80522 0.78839 1.20293 1.21201 1.20146 1.64605 1.05535 1.51085 1.00234 1.23277 0.99333 0.96984 0.89784 1.22619 0.92883 1.02584 0.97106 1.21037 0.95478 0.95803 0.95472 0.89878 1.19823 0.94737 0.94626 0.98880 1.21062 1.00355 0.90987 0.96663 1.21201 0.93520 1.00883 1.01337 1.17754 0.90636 0.83727 1.00799 1.91483 1.75500 1.55767 1.89495 1.21067 1.01393 0.91075 1.03967 1.20902 0.93531 0.98567 0.97835 1.22996 0.88864 1.02287 0.94027 0.92127 0.90915 0.90902 0.94083 0.90779 0.91897 0.95155 0.94098 0.92705 0.93832 0.89691 0.90155 0.90862 0.83999 0.84721 0.85010 0.85261 0.93904 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.40 37.16 0.31 -1.54 16 2 C 0.06 0.85 1.39 -68.86 -0.10 0.75 16 3 H 0.06 0.75 7.34 -51.93 -0.38 0.37 16 4 C 0.51 10.52 6.44 -10.98 -0.07 10.45 16 5 O -0.52 -13.09 15.31 5.56 0.09 -13.00 16 6 N -0.61 -12.83 2.86 -182.95 -0.52 -13.35 16 7 C 0.08 1.19 9.85 59.85 0.59 1.78 16 8 C 0.25 6.55 5.13 -5.20 -0.03 6.52 16 9 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 13 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 N -0.49 -6.83 4.76 -223.89 -1.07 -7.89 16 18 C 0.03 0.34 5.30 -1.90 -0.01 0.33 16 19 C -0.11 -1.01 6.50 -24.87 -0.16 -1.17 16 20 C -0.06 -0.59 3.21 -90.42 -0.29 -0.88 16 21 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 22 C -0.08 -0.87 4.72 -104.62 -0.49 -1.36 16 23 C -0.07 -0.86 8.14 -39.59 -0.32 -1.18 16 24 C -0.15 -1.77 10.03 -39.51 -0.40 -2.16 16 25 C 0.09 1.06 7.30 -39.42 -0.29 0.78 16 26 F -0.14 -1.79 17.27 2.25 0.04 -1.76 16 27 C -0.16 -1.60 10.03 -39.51 -0.40 -2.00 16 28 C -0.09 -0.88 9.68 -39.59 -0.38 -1.26 16 29 C 0.05 0.63 5.21 -2.76 -0.01 0.61 16 30 H 0.06 0.59 7.23 -51.93 -0.38 0.21 16 31 H 0.07 0.93 5.78 -51.93 -0.30 0.63 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.06 0.81 4.42 -51.93 -0.23 0.58 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.22 7.49 -51.93 -0.39 0.83 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 40 H 0.08 0.79 7.78 -51.93 -0.40 0.39 16 41 H 0.08 0.75 6.93 -51.93 -0.36 0.39 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.14 1.76 7.76 -52.49 -0.41 1.35 16 44 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 0.95 7.97 -52.49 -0.42 0.53 16 47 H 0.04 0.58 7.63 -51.93 -0.40 0.19 16 48 H 0.09 1.59 6.86 -51.92 -0.36 1.23 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -33.70 386.45 -9.74 -43.43 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.34 Total: -0.19 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.47 Total: -3.99 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.85 Total: -47.37 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.70 -9.74 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268018506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.843 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds