Wall clock time and date at job start Tue Mar 31 2020 17:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47224 * 2 1 4 4 C 1.50707 * 109.47303 * 239.99978 * 2 1 3 5 5 O 1.21279 * 120.00094 * 257.02340 * 4 2 1 6 6 N 1.34777 * 119.99744 * 77.01973 * 4 2 1 7 7 C 1.46503 * 120.00077 * 355.26856 * 6 4 2 8 8 C 1.46500 * 120.00065 * 175.26916 * 6 4 2 9 9 C 1.50695 * 109.47105 * 90.00007 * 8 6 4 10 10 H 1.08006 * 120.00073 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99790 * 180.02562 * 9 8 6 12 12 N 1.31510 * 120.00104 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99859 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47367 * 59.99877 * 13 11 9 15 15 H 1.48501 * 109.47086 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47182 * 300.00026 * 13 11 9 17 17 N 1.46905 * 109.47202 * 120.00129 * 2 1 3 18 18 C 1.48529 * 110.99938 * 303.63671 * 17 2 1 19 19 C 1.54932 * 103.22658 * 200.27581 * 18 17 2 20 20 C 1.54595 * 102.92218 * 37.41549 * 19 18 17 21 21 H 1.09005 * 110.30893 * 96.95561 * 20 19 18 22 22 C 1.50696 * 110.39465 * 219.08087 * 20 19 18 23 23 C 1.38248 * 119.97261 * 56.87815 * 22 20 19 24 24 C 1.38204 * 120.02539 * 179.76850 * 23 22 20 25 25 C 1.38462 * 119.97212 * 0.50809 * 24 23 22 26 26 F 1.35091 * 120.02490 * 179.76996 * 25 24 23 27 27 C 1.38459 * 119.94851 * 359.74312 * 25 24 23 28 28 C 1.38201 * 119.97582 * 0.02562 * 27 25 24 29 29 C 1.47899 * 111.00003 * 186.24154 * 17 2 1 30 30 H 1.08995 * 109.46888 * 306.60023 * 1 2 3 31 31 H 1.08998 * 109.47009 * 66.59875 * 1 2 3 32 32 H 1.09004 * 109.47073 * 186.59539 * 1 2 3 33 33 H 1.08994 * 109.47135 * 91.16143 * 7 6 4 34 34 H 1.09001 * 109.47436 * 211.16453 * 7 6 4 35 35 H 1.09001 * 109.47135 * 331.16724 * 7 6 4 36 36 H 1.08995 * 109.46880 * 210.00195 * 8 6 4 37 37 H 1.09001 * 109.46682 * 329.99833 * 8 6 4 38 38 H 0.97008 * 119.99790 * 179.97438 * 12 11 9 39 39 H 1.08995 * 110.67050 * 318.71580 * 18 17 2 40 40 H 1.09002 * 110.66656 * 81.67478 * 18 17 2 41 41 H 1.08995 * 110.72705 * 279.05562 * 19 18 17 42 42 H 1.09004 * 110.72232 * 155.77180 * 19 18 17 43 43 H 1.08001 * 119.98926 * 0.02562 * 23 22 20 44 44 H 1.08001 * 120.00976 * 180.25354 * 24 23 22 45 45 H 1.08002 * 120.01186 * 179.97438 * 27 25 24 46 46 H 1.08001 * 119.98718 * 180.02562 * 28 27 25 47 47 H 1.08991 * 109.91928 * 26.49055 * 29 17 2 48 48 H 1.09009 * 110.07915 * 265.28882 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4569 -1.8433 -1.1458 6 7 2.0098 -0.0868 -2.4251 7 6 1.4025 1.2409 -2.5469 8 6 2.5926 -0.7364 -3.6017 9 6 1.5379 -1.5597 -4.2950 10 1 0.5339 -1.5957 -3.8985 11 6 1.8548 -2.2677 -5.4348 12 7 3.0777 -2.2250 -5.9167 13 14 0.5475 -3.2888 -6.2938 14 1 -0.5696 -2.4073 -6.7181 15 1 1.1385 -3.9483 -7.4859 16 1 0.0345 -4.3233 -5.3600 17 7 2.0197 -0.6925 1.1994 18 6 1.4730 -0.0717 2.4330 19 6 2.4578 -0.5417 3.5329 20 6 3.8249 -0.5035 2.8120 21 1 4.3441 0.4288 3.0347 22 6 4.6687 -1.6822 3.2237 23 6 4.1912 -2.9679 3.0493 24 6 4.9661 -4.0499 3.4220 25 6 6.2168 -3.8455 3.9799 26 9 6.9732 -4.9023 4.3489 27 6 6.6918 -2.5573 4.1588 28 6 5.9171 -1.4770 3.7810 29 6 3.4904 -0.5836 1.3110 30 1 -0.3633 0.6127 0.8250 31 1 -0.3633 0.4081 -0.9431 32 1 -0.3633 -1.0209 0.1180 33 1 2.1637 2.0046 -2.3879 34 1 0.9758 1.3552 -3.5434 35 1 0.6162 1.3507 -1.8001 36 1 2.9693 0.0230 -4.2868 37 1 3.4125 -1.3838 -3.2905 38 1 3.3007 -2.7235 -6.7185 39 1 1.4776 1.0152 2.3513 40 1 0.4656 -0.4368 2.6335 41 1 2.2202 -1.5552 3.8559 42 1 2.4483 0.1460 4.3785 43 1 3.2140 -3.1269 2.6179 44 1 4.5945 -5.0542 3.2819 45 1 7.6670 -2.3968 4.5943 46 1 6.2875 -0.4721 3.9201 47 1 3.8355 0.3180 0.8051 48 1 3.9651 -1.4608 0.8712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268018506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:00 Heat of formation + Delta-G solvation = -62.822883 kcal Electronic energy + Delta-G solvation = -29087.382172 eV Core-core repulsion = 25056.002933 eV Total energy + Delta-G solvation = -4031.379238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.91392 -41.38874 -40.39117 -38.80634 -36.52811 -35.20172 -34.48632 -32.12726 -31.85352 -30.28807 -29.69807 -28.30808 -27.44898 -25.71761 -24.25815 -24.02720 -23.42740 -21.82047 -21.00394 -19.88182 -18.70007 -18.66773 -18.05143 -17.59873 -17.26358 -16.92888 -16.61145 -16.56812 -16.17256 -15.84537 -15.71028 -15.12627 -14.77722 -14.52465 -14.42480 -14.29273 -14.12041 -14.07620 -13.73310 -13.57570 -13.43514 -13.40033 -13.15073 -13.07128 -12.92383 -12.72396 -12.52128 -12.35144 -12.23275 -12.20068 -12.10941 -12.05483 -11.77050 -11.70935 -11.48471 -10.65178 -10.41310 -10.05278 -9.49657 -9.39408 -9.26875 -8.22767 -6.37629 0.14075 0.28674 1.34783 1.39767 1.46798 1.88170 2.25930 2.41749 2.57959 3.05292 3.06463 3.29221 3.57291 3.62902 3.69017 3.89727 3.95325 3.97328 4.10973 4.16738 4.30497 4.35089 4.37103 4.39458 4.48315 4.59947 4.68213 4.68264 4.76032 4.84723 4.93916 4.95282 4.99993 5.01463 5.04876 5.10025 5.15010 5.16873 5.20591 5.27686 5.30734 5.34519 5.55933 5.60461 5.83007 5.93609 5.96259 6.05865 6.08533 6.70328 6.83701 7.28883 7.55829 8.83860 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.003006 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.163180 B = 9313.742198 C =10805.509838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.085 0.915 4 C 0.497 3.503 5 O -0.578 6.578 6 N -0.614 5.614 7 C 0.070 3.930 8 C 0.264 3.736 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.258 1.258 15 H -0.278 1.278 16 H -0.280 1.280 17 N -0.517 5.517 18 C 0.036 3.964 19 C -0.107 4.107 20 C -0.050 4.050 21 H 0.112 0.888 22 C -0.085 4.085 23 C -0.087 4.087 24 C -0.165 4.165 25 C 0.070 3.930 26 F -0.152 7.152 27 C -0.154 4.154 28 C -0.085 4.085 29 C 0.049 3.951 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.022 0.978 37 H -0.008 1.008 38 H 0.267 0.733 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.155 0.845 46 H 0.163 0.837 47 H 0.041 0.959 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 10.709 23.512 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.042 4.042 3 H 0.103 0.897 4 C 0.285 3.715 5 O -0.457 6.457 6 N -0.346 5.346 7 C -0.071 4.071 8 C 0.142 3.858 9 C -0.579 4.579 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.182 1.182 15 H -0.203 1.203 16 H -0.205 1.205 17 N -0.242 5.242 18 C -0.091 4.091 19 C -0.145 4.145 20 C -0.068 4.068 21 H 0.130 0.870 22 C -0.085 4.085 23 C -0.105 4.105 24 C -0.184 4.184 25 C 0.051 3.949 26 F -0.130 7.130 27 C -0.172 4.172 28 C -0.103 4.103 29 C -0.079 4.079 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.040 0.960 37 H 0.010 0.990 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.173 0.827 46 H 0.180 0.820 47 H 0.059 0.941 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.684 9.498 23.339 25.207 hybrid contribution 0.276 -0.689 -1.224 1.431 sum -0.408 8.808 22.116 23.809 Atomic orbital electron populations 1.21902 0.90445 1.03192 1.04131 1.21766 0.98421 0.95785 0.88181 0.89744 1.21257 0.78554 0.86421 0.85252 1.90638 1.48383 1.20288 1.86418 1.48186 1.58156 1.19568 1.08739 1.22105 0.98782 0.82287 1.03964 1.18673 0.92890 0.91901 0.82308 1.21667 0.96887 1.29462 1.09912 0.92979 1.25868 0.97866 0.97602 0.97893 1.70047 1.20311 1.43191 1.23371 0.85488 0.79107 0.78764 0.77578 1.18218 1.20286 1.20522 1.64492 1.05786 1.52568 1.01369 1.23400 0.99726 0.98212 0.87748 1.22625 0.91455 1.02881 0.97552 1.21042 0.96448 0.96519 0.92839 0.87004 1.20023 0.95511 0.94345 0.98647 1.21017 1.00035 0.91986 0.97461 1.21293 0.94041 1.01115 1.01948 1.17984 0.90744 0.84402 1.01758 1.91457 1.75609 1.56286 1.89680 1.21389 1.02332 0.90340 1.03167 1.21255 0.92586 0.99943 0.96501 1.22848 0.88800 0.99886 0.96402 0.87841 0.90781 0.93099 0.91391 0.91545 0.88332 0.95984 0.99023 0.92436 0.91373 0.88852 0.91241 0.87686 0.85574 0.84714 0.82705 0.81953 0.94093 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.40 71.98 0.60 -2.57 16 2 C 0.07 1.99 1.39 44.17 0.06 2.05 16 3 H 0.09 1.92 7.34 -2.39 -0.02 1.90 16 4 C 0.50 21.12 6.44 87.66 0.56 21.69 16 5 O -0.58 -31.22 15.31 -3.03 -0.05 -31.27 16 6 N -0.61 -26.52 2.86 -851.13 -2.43 -28.95 16 7 C 0.07 2.10 9.85 127.77 1.26 3.36 16 8 C 0.26 14.62 5.13 85.63 0.44 15.06 16 9 C -0.54 -31.96 9.39 25.60 0.24 -31.72 16 10 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 11 C 0.01 0.38 5.46 84.66 0.46 0.85 16 12 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 13 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 14 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 N -0.52 -13.88 4.76 -862.25 -4.11 -17.99 16 18 C 0.04 0.59 5.30 86.65 0.46 1.05 16 19 C -0.11 -1.57 6.50 31.80 0.21 -1.36 16 20 C -0.05 -0.89 3.21 -10.66 -0.03 -0.93 16 21 H 0.11 1.41 7.92 -2.38 -0.02 1.39 16 22 C -0.08 -1.77 4.72 -19.86 -0.09 -1.86 16 23 C -0.09 -2.17 8.14 22.26 0.18 -1.99 16 24 C -0.17 -4.14 10.03 22.32 0.22 -3.91 16 25 C 0.07 1.69 7.30 22.38 0.16 1.85 16 26 F -0.15 -3.87 17.27 44.97 0.78 -3.10 16 27 C -0.15 -2.94 10.03 22.31 0.22 -2.72 16 28 C -0.09 -1.47 9.68 22.26 0.22 -1.25 16 29 C 0.05 1.32 5.21 86.45 0.45 1.77 16 30 H 0.10 1.50 7.23 -2.39 -0.02 1.48 16 31 H 0.07 1.66 5.78 -2.39 -0.01 1.64 16 32 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 2.08 8.08 -2.39 -0.02 2.07 16 35 H 0.10 2.22 4.42 -2.39 -0.01 2.20 16 36 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 37 H -0.01 -0.54 7.49 -2.39 -0.02 -0.56 16 38 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 39 H 0.07 0.84 8.02 -2.39 -0.02 0.82 16 40 H 0.09 1.40 7.78 -2.39 -0.02 1.39 16 41 H 0.07 1.19 6.93 -2.39 -0.02 1.17 16 42 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.13 3.46 7.76 -2.91 -0.02 3.44 16 44 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 46 H 0.16 1.70 7.97 -2.91 -0.02 1.68 16 47 H 0.04 1.08 7.63 -2.39 -0.02 1.07 16 48 H 0.05 1.68 6.86 -2.38 -0.02 1.67 16 Total: -1.00 -80.07 386.45 3.08 -76.99 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.95 Total: 14.23 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.63 Total: -0.65 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.25 Total: -104.10 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.10 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -80.07 3.08 -76.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268018506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.164 kcal (2) G-P(sol) polarization free energy of solvation -80.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds