Wall clock time and date at job start Tue Mar 31 2020 18:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47491 * 2 1 4 4 C 1.46502 * 119.99847 * 270.00344 * 3 2 1 5 5 C 1.50700 * 109.46827 * 269.99711 * 4 3 2 6 6 H 1.07993 * 120.00455 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99624 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99874 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47432 * 59.99224 * 9 7 5 11 11 H 1.48503 * 109.47312 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47057 * 299.99522 * 9 7 5 13 13 C 1.34773 * 119.99954 * 89.99924 * 3 2 1 14 14 O 1.21279 * 120.00055 * 180.02562 * 13 3 2 15 15 C 1.50705 * 120.00052 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47004 * 173.95694 * 15 13 3 17 17 C 1.47900 * 110.99925 * 183.36127 * 16 15 13 18 18 C 1.53989 * 107.06097 * 145.84762 * 17 16 15 19 19 C 1.54602 * 105.13940 * 358.77652 * 18 17 16 20 20 H 1.08995 * 110.72535 * 96.57830 * 19 18 17 21 21 C 1.50695 * 110.72436 * 219.68467 * 19 18 17 22 22 C 1.38242 * 119.97459 * 238.54447 * 21 19 18 23 23 C 1.38197 * 120.02486 * 180.02562 * 22 21 19 24 24 C 1.38461 * 119.97724 * 0.02562 * 23 22 21 25 25 F 1.35104 * 120.02850 * 179.97438 * 24 23 22 26 26 C 1.38457 * 119.94301 * 0.25254 * 24 23 22 27 27 C 1.38193 * 119.97675 * 359.47473 * 26 24 23 28 28 C 1.48527 * 111.00402 * 300.75984 * 16 15 13 29 29 H 1.09002 * 109.46523 * 300.00261 * 1 2 3 30 30 H 1.09001 * 109.47170 * 59.99455 * 1 2 3 31 31 H 1.08992 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47074 * 240.00254 * 2 1 3 33 33 H 1.08994 * 109.47306 * 120.00193 * 2 1 3 34 34 H 1.08997 * 109.47118 * 29.99892 * 4 3 2 35 35 H 1.08998 * 109.46892 * 149.99751 * 4 3 2 36 36 H 0.97000 * 119.99882 * 180.02562 * 8 7 5 37 37 H 1.09009 * 109.46814 * 53.96212 * 15 13 3 38 38 H 1.09003 * 109.47115 * 293.96229 * 15 13 3 39 39 H 1.08999 * 109.91798 * 26.49510 * 17 16 15 40 40 H 1.09009 * 110.08758 * 265.29534 * 17 16 15 41 41 H 1.09000 * 110.31545 * 239.86101 * 18 17 16 42 42 H 1.08996 * 110.31309 * 117.69275 * 18 17 16 43 43 H 1.07999 * 119.98696 * 0.02562 * 22 21 19 44 44 H 1.08006 * 120.01385 * 180.02562 * 23 22 21 45 45 H 1.08009 * 120.00697 * 179.72848 * 26 24 23 46 46 H 1.08009 * 119.98615 * 180.27703 * 27 26 24 47 47 H 1.09004 * 110.66838 * 81.84436 * 28 16 15 48 48 H 1.09003 * 110.66895 * 318.71335 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0959 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9133 2.0963 -3.4172 10 1 6.1401 0.6396 -3.5954 11 1 6.1609 2.7964 -4.7032 12 1 6.8413 2.6186 -2.3821 13 6 2.2431 2.0166 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3060 2.4723 16 7 2.4458 2.1512 3.5849 17 6 2.2892 1.4526 4.8791 18 6 3.4560 1.9008 5.7785 19 6 4.2918 2.8646 4.9052 20 1 4.0205 3.9009 5.1063 21 6 5.7657 2.6477 5.1323 22 6 6.5574 3.6913 5.5743 23 6 7.9092 3.4936 5.7824 24 6 8.4708 2.2500 5.5476 25 9 9.7924 2.0558 5.7502 26 6 7.6779 1.2071 5.0994 27 6 6.3253 1.4056 4.8974 28 6 3.8937 2.4593 3.4637 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1384 36 1 3.6754 3.5170 -4.4435 37 1 2.5411 0.3642 2.4845 38 1 0.9260 1.1066 2.5785 39 1 2.3312 0.3742 4.7265 40 1 1.3395 1.7255 5.3394 41 1 4.0572 1.0413 6.0749 42 1 3.0774 2.4201 6.6588 43 1 6.1192 4.6613 5.7570 44 1 8.5275 4.3089 6.1281 45 1 8.1157 0.2378 4.9117 46 1 5.7058 0.5910 4.5521 47 1 4.0543 3.2872 2.7731 48 1 4.4493 1.5775 3.1447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268052458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:02 Heat of formation + Delta-G solvation = -48.366428 kcal Electronic energy + Delta-G solvation = -28954.203524 eV Core-core repulsion = 24923.451165 eV Total energy + Delta-G solvation = -4030.752359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.02532 -40.17521 -39.11791 -37.70851 -35.23691 -33.26000 -32.69742 -31.33586 -30.36271 -30.03536 -28.25313 -27.54042 -25.72332 -23.48727 -23.05377 -22.80438 -22.29690 -20.94872 -20.23629 -18.30854 -17.86905 -16.88481 -16.51073 -16.35228 -16.17689 -15.72441 -15.42416 -15.33939 -14.82824 -14.72513 -14.22674 -13.93896 -13.71901 -13.55181 -13.50303 -13.33540 -13.12844 -12.86893 -12.73104 -12.37035 -12.18350 -11.96915 -11.89347 -11.66119 -11.41301 -11.30697 -11.19798 -11.06751 -11.03737 -10.89261 -10.69199 -10.59309 -10.51671 -10.10627 -9.64198 -9.28715 -8.84820 -8.66865 -8.42802 -8.23807 -7.63837 -6.03814 -4.08597 0.95912 1.05502 3.31292 3.36144 3.37465 3.38041 3.46195 3.69945 4.08837 4.16606 4.43977 4.47734 4.59772 4.69630 4.72390 4.78518 5.03141 5.06976 5.10676 5.14615 5.24079 5.30529 5.32127 5.41915 5.49364 5.53083 5.62331 5.65900 5.70106 5.74097 5.79582 5.86265 5.93691 5.96468 6.01472 6.02818 6.08944 6.22310 6.36919 6.44343 6.47497 6.71235 6.92685 6.95710 7.15314 7.46781 7.57120 7.92881 8.24421 8.44960 8.91130 9.13995 9.56598 11.04164 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.003575 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.142592 B = 7829.587753 C =10071.210336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.524 6.524 15 C 0.028 3.972 16 N -0.498 5.498 17 C 0.034 3.966 18 C -0.121 4.121 19 C -0.055 4.055 20 H 0.094 0.906 21 C -0.076 4.076 22 C -0.085 4.085 23 C -0.151 4.151 24 C 0.089 3.911 25 F -0.143 7.143 26 C -0.150 4.150 27 C -0.086 4.086 28 C 0.045 3.955 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.109 0.891 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -6.310 20.326 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.401 6.401 15 C -0.103 4.103 16 N -0.222 5.222 17 C -0.094 4.094 18 C -0.159 4.159 19 C -0.074 4.074 20 H 0.113 0.887 21 C -0.076 4.076 22 C -0.103 4.103 23 C -0.170 4.170 24 C 0.070 3.930 25 F -0.122 7.122 26 C -0.169 4.169 27 C -0.104 4.104 28 C -0.082 4.082 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.127 0.873 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.460 -5.124 20.099 20.747 hybrid contribution 1.673 -1.144 -0.476 2.082 sum 2.132 -6.269 19.624 20.711 Atomic orbital electron populations 1.22220 0.96768 1.01346 1.02403 1.21410 0.93551 0.84356 1.02493 1.48264 1.64053 1.13157 1.07720 1.19236 0.96117 0.93649 0.78067 1.21383 0.96936 1.31926 1.06252 0.92681 1.24914 0.97719 0.94924 0.96404 1.69919 1.35683 1.33367 1.14354 0.86600 0.84954 0.78230 0.77888 1.20296 1.21135 1.20198 1.20084 0.78970 0.87120 0.84729 1.90641 1.44916 1.17690 1.86803 1.22309 1.02146 0.94745 0.91108 1.64560 1.17803 1.39527 1.00301 1.22920 0.99293 0.96611 0.90588 1.22515 0.96193 0.98988 0.98234 1.21114 0.89412 1.01008 0.95856 0.88737 1.19864 0.95689 0.93413 0.98668 1.20960 0.92435 0.99100 0.97823 1.21133 0.96248 0.96060 1.03565 1.17725 0.77818 0.95059 1.02416 1.91491 1.32043 1.95813 1.92844 1.21124 0.94328 0.99012 1.02439 1.20867 0.93905 0.97314 0.98280 1.23483 0.86928 1.01964 0.95819 0.93044 0.91983 0.92242 0.90007 0.92022 0.95122 0.93890 0.92671 0.92631 0.88400 0.93859 0.90193 0.91228 0.90729 0.84817 0.84796 0.84832 0.85223 0.87270 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.66 5.96 -4.04 -0.02 1.64 16 3 N -0.60 -12.43 2.46 -175.06 -0.43 -12.86 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.42 16 5 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 6 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.31 7.31 -10.98 -0.08 10.23 16 14 O -0.52 -12.93 13.87 5.56 0.08 -12.86 16 15 C 0.03 0.42 4.03 -4.98 -0.02 0.40 16 16 N -0.50 -7.17 5.11 -231.89 -1.18 -8.36 16 17 C 0.03 0.35 6.70 -2.76 -0.02 0.34 16 18 C -0.12 -1.13 6.42 -25.37 -0.16 -1.29 16 19 C -0.05 -0.62 3.28 -89.91 -0.30 -0.92 16 20 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 21 C -0.08 -0.84 4.93 -104.62 -0.52 -1.35 16 22 C -0.09 -0.87 9.68 -39.59 -0.38 -1.26 16 23 C -0.15 -1.57 10.03 -39.51 -0.40 -1.97 16 24 C 0.09 1.02 7.30 -39.42 -0.29 0.74 16 25 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 26 C -0.15 -1.63 10.03 -39.52 -0.40 -2.03 16 27 C -0.09 -0.93 8.14 -39.60 -0.32 -1.25 16 28 C 0.05 0.67 4.97 -1.90 -0.01 0.66 16 29 H 0.05 0.64 7.41 -51.93 -0.38 0.25 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.06 0.80 6.28 -51.93 -0.33 0.47 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.06 0.74 6.92 -51.92 -0.36 0.38 16 38 H 0.10 1.26 7.41 -51.93 -0.38 0.88 16 39 H 0.04 0.41 7.68 -51.93 -0.40 0.01 16 40 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.07 0.59 7.06 -51.93 -0.37 0.22 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.13 1.12 7.98 -52.49 -0.42 0.70 16 44 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 45 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 46 H 0.13 1.27 7.27 -52.48 -0.38 0.89 16 47 H 0.11 2.05 6.43 -51.93 -0.33 1.72 16 48 H 0.04 0.64 6.69 -51.93 -0.35 0.29 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -32.96 389.28 -10.31 -43.27 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.42 Total: 0.52 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.98 Total: -4.94 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.88 Total: -47.05 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.96 -10.31 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268052458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.093 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds