Wall clock time and date at job start Tue Mar 31 2020 18:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47491 * 2 1 4 4 C 1.46502 * 119.99847 * 270.00344 * 3 2 1 5 5 C 1.50700 * 109.46827 * 269.99711 * 4 3 2 6 6 H 1.07993 * 120.00455 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99624 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99874 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47432 * 59.99224 * 9 7 5 11 11 H 1.48503 * 109.47312 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47057 * 299.99522 * 9 7 5 13 13 C 1.34773 * 119.99954 * 89.99924 * 3 2 1 14 14 O 1.21279 * 120.00055 * 180.02562 * 13 3 2 15 15 C 1.50705 * 120.00052 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47004 * 173.95694 * 15 13 3 17 17 C 1.47900 * 110.99925 * 183.36127 * 16 15 13 18 18 C 1.53989 * 107.06097 * 145.84762 * 17 16 15 19 19 C 1.54602 * 105.13940 * 358.77652 * 18 17 16 20 20 H 1.08995 * 110.72535 * 96.57830 * 19 18 17 21 21 C 1.50695 * 110.72436 * 219.68467 * 19 18 17 22 22 C 1.38242 * 119.97459 * 238.54447 * 21 19 18 23 23 C 1.38197 * 120.02486 * 180.02562 * 22 21 19 24 24 C 1.38461 * 119.97724 * 0.02562 * 23 22 21 25 25 F 1.35104 * 120.02850 * 179.97438 * 24 23 22 26 26 C 1.38457 * 119.94301 * 0.25254 * 24 23 22 27 27 C 1.38193 * 119.97675 * 359.47473 * 26 24 23 28 28 C 1.48527 * 111.00402 * 300.75984 * 16 15 13 29 29 H 1.09002 * 109.46523 * 300.00261 * 1 2 3 30 30 H 1.09001 * 109.47170 * 59.99455 * 1 2 3 31 31 H 1.08992 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47074 * 240.00254 * 2 1 3 33 33 H 1.08994 * 109.47306 * 120.00193 * 2 1 3 34 34 H 1.08997 * 109.47118 * 29.99892 * 4 3 2 35 35 H 1.08998 * 109.46892 * 149.99751 * 4 3 2 36 36 H 0.97000 * 119.99882 * 180.02562 * 8 7 5 37 37 H 1.09009 * 109.46814 * 53.96212 * 15 13 3 38 38 H 1.09003 * 109.47115 * 293.96229 * 15 13 3 39 39 H 1.08999 * 109.91798 * 26.49510 * 17 16 15 40 40 H 1.09009 * 110.08758 * 265.29534 * 17 16 15 41 41 H 1.09000 * 110.31545 * 239.86101 * 18 17 16 42 42 H 1.08996 * 110.31309 * 117.69275 * 18 17 16 43 43 H 1.07999 * 119.98696 * 0.02562 * 22 21 19 44 44 H 1.08006 * 120.01385 * 180.02562 * 23 22 21 45 45 H 1.08009 * 120.00697 * 179.72848 * 26 24 23 46 46 H 1.08009 * 119.98615 * 180.27703 * 27 26 24 47 47 H 1.09004 * 110.66838 * 81.84436 * 28 16 15 48 48 H 1.09003 * 110.66895 * 318.71335 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0959 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9133 2.0963 -3.4172 10 1 6.1401 0.6396 -3.5954 11 1 6.1609 2.7964 -4.7032 12 1 6.8413 2.6186 -2.3821 13 6 2.2431 2.0166 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3060 2.4723 16 7 2.4458 2.1512 3.5849 17 6 2.2892 1.4526 4.8791 18 6 3.4560 1.9008 5.7785 19 6 4.2918 2.8646 4.9052 20 1 4.0205 3.9009 5.1063 21 6 5.7657 2.6477 5.1323 22 6 6.5574 3.6913 5.5743 23 6 7.9092 3.4936 5.7824 24 6 8.4708 2.2500 5.5476 25 9 9.7924 2.0558 5.7502 26 6 7.6779 1.2071 5.0994 27 6 6.3253 1.4056 4.8974 28 6 3.8937 2.4593 3.4637 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1384 36 1 3.6754 3.5170 -4.4435 37 1 2.5411 0.3642 2.4845 38 1 0.9260 1.1066 2.5785 39 1 2.3312 0.3742 4.7265 40 1 1.3395 1.7255 5.3394 41 1 4.0572 1.0413 6.0749 42 1 3.0774 2.4201 6.6588 43 1 6.1192 4.6613 5.7570 44 1 8.5275 4.3089 6.1281 45 1 8.1157 0.2378 4.9117 46 1 5.7058 0.5910 4.5521 47 1 4.0543 3.2872 2.7731 48 1 4.4493 1.5775 3.1447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268052458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:01 Heat of formation + Delta-G solvation = -68.254209 kcal Electronic energy + Delta-G solvation = -28955.065923 eV Core-core repulsion = 24923.451165 eV Total energy + Delta-G solvation = -4031.614758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.91843 -41.26141 -40.38623 -38.77939 -36.86938 -34.96496 -34.10974 -32.13720 -31.67672 -31.16911 -29.53948 -28.90477 -27.18207 -24.81897 -24.30019 -23.98823 -23.41930 -21.98634 -21.10651 -19.83235 -18.73496 -18.62374 -18.03138 -17.58113 -17.31568 -16.83529 -16.61764 -16.46560 -16.26288 -16.07693 -15.51126 -14.98945 -14.77728 -14.62757 -14.57523 -14.47183 -14.30123 -14.01826 -13.94213 -13.68511 -13.55538 -13.29787 -13.12487 -13.08367 -12.83698 -12.65067 -12.55399 -12.36454 -12.19231 -12.15032 -12.02580 -11.89279 -11.80187 -11.70272 -11.45101 -10.65061 -10.45043 -10.08953 -9.53505 -9.41104 -9.29210 -8.22766 -6.37562 0.11102 0.25249 1.34007 1.38092 1.45234 1.88503 2.25445 2.40913 2.55017 3.03221 3.06587 3.27591 3.61681 3.65361 3.76193 3.88883 3.93861 3.97718 4.08631 4.24088 4.28651 4.32456 4.34569 4.37104 4.39799 4.49478 4.65362 4.67605 4.78609 4.91135 4.95186 4.98555 5.00364 5.03275 5.06467 5.10378 5.13814 5.17489 5.22640 5.23390 5.31855 5.40374 5.58264 5.58941 5.84812 5.89226 5.90781 6.04786 6.07181 6.70641 6.85186 7.28933 7.55840 8.83973 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.003575 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.142592 B = 7829.587753 C =10071.210336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.963 3.037 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.494 3.506 14 O -0.579 6.579 15 C 0.043 3.957 16 N -0.520 5.520 17 C 0.035 3.965 18 C -0.113 4.113 19 C -0.047 4.047 20 H 0.091 0.909 21 C -0.084 4.084 22 C -0.091 4.091 23 C -0.153 4.153 24 C 0.070 3.930 25 F -0.150 7.150 26 C -0.156 4.156 27 C -0.091 4.091 28 C 0.049 3.951 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.058 0.942 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -8.659 22.446 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.282 3.718 14 O -0.459 6.459 15 C -0.088 4.088 16 N -0.244 5.244 17 C -0.092 4.092 18 C -0.151 4.151 19 C -0.066 4.066 20 H 0.109 0.891 21 C -0.085 4.085 22 C -0.108 4.108 23 C -0.172 4.172 24 C 0.051 3.949 25 F -0.129 7.129 26 C -0.174 4.174 27 C -0.109 4.109 28 C -0.079 4.079 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.076 0.924 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.420 -7.529 22.244 23.487 hybrid contribution 1.631 -0.375 -1.141 2.026 sum 2.051 -7.903 21.103 22.627 Atomic orbital electron populations 1.22149 0.94519 1.03486 1.01704 1.21742 0.95373 0.81392 1.03751 1.48299 1.64256 1.15076 1.06195 1.18632 0.95092 0.91396 0.80476 1.21663 0.97888 1.31934 1.06457 0.93027 1.25816 1.02151 0.94502 0.96469 1.70043 1.37749 1.34181 1.14805 0.85543 0.79269 0.79081 0.77389 1.18377 1.20264 1.20550 1.21190 0.77489 0.86769 0.86337 1.90623 1.47164 1.20371 1.87754 1.22236 1.04150 0.94566 0.87801 1.64497 1.17240 1.40908 1.01785 1.23031 1.00336 0.97443 0.88407 1.22511 0.95504 0.98981 0.98060 1.21006 0.90064 1.01489 0.94010 0.89060 1.19956 0.95635 0.93862 0.98997 1.21200 0.92436 0.99718 0.97489 1.21363 0.96525 0.96253 1.03066 1.17984 0.77714 0.95859 1.03330 1.91469 1.32532 1.95899 1.93010 1.21324 0.94410 0.99571 1.02125 1.21013 0.94054 0.97602 0.98238 1.23247 0.87779 0.99936 0.96955 0.91992 0.94468 0.88581 0.91194 0.88266 0.96237 0.98808 0.92427 0.90123 0.85593 0.91858 0.88816 0.89882 0.89006 0.83192 0.83123 0.83492 0.84169 0.92375 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.10 16 2 C 0.10 2.96 5.96 86.38 0.51 3.47 16 3 N -0.61 -25.59 2.46 -826.15 -2.03 -27.62 16 4 C 0.27 14.52 5.16 85.63 0.44 14.96 16 5 C -0.54 -31.50 9.39 25.60 0.24 -31.26 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.56 5.46 84.66 0.46 1.03 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 9 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 C 0.49 20.46 7.31 87.66 0.64 21.10 16 14 O -0.58 -30.23 13.87 -3.03 -0.04 -30.27 16 15 C 0.04 1.19 4.03 85.56 0.35 1.54 16 16 N -0.52 -14.15 5.11 -887.56 -4.54 -18.69 16 17 C 0.03 0.60 6.70 86.44 0.58 1.18 16 18 C -0.11 -1.74 6.42 31.47 0.20 -1.54 16 19 C -0.05 -1.00 3.28 -10.33 -0.03 -1.03 16 20 H 0.09 1.99 7.94 -2.39 -0.02 1.98 16 21 C -0.08 -1.76 4.93 -19.86 -0.10 -1.85 16 22 C -0.09 -1.76 9.68 22.26 0.22 -1.55 16 23 C -0.15 -3.04 10.03 22.31 0.22 -2.81 16 24 C 0.07 1.56 7.30 22.38 0.16 1.72 16 25 F -0.15 -3.57 17.27 44.97 0.78 -2.79 16 26 C -0.16 -3.20 10.03 22.31 0.22 -2.98 16 27 C -0.09 -1.85 8.14 22.26 0.18 -1.66 16 28 C 0.05 1.45 4.97 86.65 0.43 1.88 16 29 H 0.06 1.36 7.41 -2.39 -0.02 1.34 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 33 H 0.10 2.20 6.28 -2.39 -0.01 2.19 16 34 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 35 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.08 1.83 6.92 -2.38 -0.02 1.81 16 38 H 0.13 2.77 7.41 -2.39 -0.02 2.76 16 39 H 0.06 0.87 7.68 -2.39 -0.02 0.85 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.08 1.09 7.06 -2.39 -0.02 1.08 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.15 2.33 7.98 -2.91 -0.02 2.30 16 44 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 45 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 46 H 0.14 2.46 7.27 -2.91 -0.02 2.44 16 47 H 0.06 2.33 6.43 -2.39 -0.02 2.32 16 48 H 0.04 1.13 6.69 -2.39 -0.02 1.12 16 Total: -1.00 -77.02 389.28 2.90 -74.12 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.95 Total: 15.28 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.47 Total: -0.92 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -6.28 Total: -102.93 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.04 Total: -30.27 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.02 2.90 -74.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268052458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.862 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds