Wall clock time and date at job start Tue Mar 31 2020 18:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.47031 * 2 1 4 4 C 1.46499 * 120.00029 * 269.99782 * 3 2 1 5 5 C 1.50703 * 109.47169 * 270.00094 * 4 3 2 6 6 H 1.08000 * 120.00014 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00073 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99929 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99899 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46768 * 90.00129 * 9 7 5 11 11 H 1.48492 * 109.46906 * 209.99878 * 9 7 5 12 12 H 1.48500 * 109.47249 * 330.00127 * 9 7 5 13 13 C 1.34781 * 120.00450 * 89.99710 * 3 2 1 14 14 O 1.21275 * 120.00517 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99556 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47021 * 179.97438 * 15 13 3 17 17 C 1.47161 * 111.00016 * 293.95095 * 16 15 13 18 18 C 1.52896 * 108.49105 * 165.27374 * 17 16 15 19 19 C 1.50729 * 109.95490 * 50.40034 * 18 17 16 20 20 C 1.38637 * 118.45941 * 163.24939 * 19 18 17 21 21 C 1.38258 * 120.32999 * 179.86689 * 20 19 18 22 22 F 1.35097 * 120.11657 * 179.97438 * 21 20 19 23 23 C 1.38484 * 119.77062 * 359.97297 * 21 20 19 24 24 C 1.37974 * 119.84287 * 0.06514 * 23 21 20 25 25 C 1.50699 * 119.79238 * 179.97438 * 24 23 21 26 26 C 1.37854 * 121.66154 * 343.19979 * 19 18 17 27 27 C 1.46632 * 110.99885 * 170.97338 * 16 15 13 28 28 H 1.08996 * 109.47171 * 300.00495 * 1 2 3 29 29 H 1.08998 * 109.46497 * 59.99871 * 1 2 3 30 30 H 1.09001 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46746 * 239.99818 * 2 1 3 32 32 H 1.09000 * 109.46541 * 119.99583 * 2 1 3 33 33 H 1.09007 * 109.46964 * 30.00199 * 4 3 2 34 34 H 1.09002 * 109.47357 * 149.99976 * 4 3 2 35 35 H 0.96996 * 119.99937 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47374 * 59.99960 * 15 13 3 37 37 H 1.09005 * 109.47285 * 299.99678 * 15 13 3 38 38 H 1.09004 * 109.63405 * 45.57816 * 17 16 15 39 39 H 1.08998 * 109.80280 * 285.07203 * 17 16 15 40 40 H 1.08995 * 109.39340 * 170.54864 * 18 17 16 41 41 H 1.08998 * 109.39489 * 290.25399 * 18 17 16 42 42 H 1.07994 * 119.83581 * 359.82807 * 20 19 18 43 43 H 1.07999 * 120.08204 * 180.02562 * 23 21 20 44 44 H 1.09002 * 109.47307 * 270.02450 * 25 24 23 45 45 H 1.09008 * 109.47005 * 30.02416 * 25 24 23 46 46 H 1.09000 * 109.47484 * 150.02422 * 25 24 23 47 47 H 1.09005 * 109.26904 * 296.17440 * 27 16 15 48 48 H 1.09004 * 109.27636 * 55.64956 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3430 1.2309 -1.0957 7 6 4.1493 2.3896 -2.8779 8 7 5.3912 2.1825 -3.2578 9 14 3.0129 3.4351 -3.9293 10 1 3.1165 4.8554 -3.5081 11 1 3.4059 3.3119 -5.3559 12 1 1.6132 2.9692 -3.7593 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2060 3.5888 17 6 3.7502 2.5102 3.6267 18 6 3.9680 3.7107 4.5483 19 6 3.2731 3.4805 5.8658 20 6 3.6316 4.2688 6.9484 21 6 3.0171 4.0925 8.1744 22 9 3.3702 4.8628 9.2266 23 6 2.0384 3.1237 8.3200 24 6 1.6831 2.3392 7.2420 25 6 0.6183 1.2848 7.4019 26 6 2.3004 2.5146 6.0118 27 6 1.8802 1.6305 4.8669 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7172 2.5730 -4.0836 36 1 2.6229 0.4188 2.5299 37 1 0.9444 1.0115 2.5302 38 1 4.1003 2.7510 2.6229 39 1 4.2995 1.6502 4.0097 40 1 5.0357 3.8454 4.7210 41 1 3.5633 4.6066 4.0774 42 1 4.3951 5.0240 6.8338 43 1 1.5549 2.9819 9.2752 44 1 1.0803 0.3446 7.7032 45 1 -0.0939 1.6004 8.1643 46 1 0.0984 1.1467 6.4539 47 1 0.7947 1.5309 4.8689 48 1 2.3314 0.6457 4.9883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337476817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:38 Heat of formation + Delta-G solvation = -48.143293 kcal Electronic energy + Delta-G solvation = -29051.104991 eV Core-core repulsion = 25020.362307 eV Total energy + Delta-G solvation = -4030.742683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.03110 -40.48598 -39.21871 -36.92858 -35.30030 -34.12933 -32.77784 -31.87086 -30.36495 -30.02360 -28.66586 -27.42962 -26.43986 -24.17641 -23.46543 -22.99932 -21.90185 -21.27344 -19.80049 -18.36513 -17.20741 -16.98705 -16.95482 -16.60649 -15.92731 -15.77036 -15.44483 -15.27591 -14.91745 -14.50882 -14.36628 -13.95790 -13.83222 -13.63491 -13.49192 -13.38155 -13.30174 -13.05111 -12.74034 -12.55728 -12.43025 -12.28949 -12.06988 -11.89515 -11.77168 -11.56635 -11.37206 -11.23814 -10.98919 -10.91489 -10.80520 -10.54514 -10.50228 -10.15335 -9.55544 -9.01689 -8.86736 -8.64360 -8.60018 -8.22121 -7.71851 -6.10189 -4.08853 0.96928 1.04088 3.28389 3.32529 3.33871 3.34495 3.36727 3.51289 4.03599 4.10087 4.38711 4.41681 4.47104 4.68073 4.85705 4.89768 5.01700 5.12529 5.17797 5.20611 5.23672 5.24224 5.28745 5.33138 5.39404 5.41871 5.49655 5.54800 5.58046 5.61802 5.70679 5.79862 5.88545 5.94028 5.94842 6.04212 6.12718 6.20173 6.26899 6.36935 6.40954 6.68090 6.73407 6.92099 7.00399 7.07009 7.35450 7.60396 8.25669 8.45767 8.91643 9.00484 9.50561 11.03188 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002733 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.214718 B =10242.352195 C =11337.764757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.522 6.522 15 C 0.036 3.964 16 N -0.514 5.514 17 C 0.048 3.952 18 C -0.076 4.076 19 C -0.026 4.026 20 C -0.162 4.162 21 C 0.099 3.901 22 F -0.143 7.143 23 C -0.163 4.163 24 C -0.054 4.054 25 C -0.119 4.119 26 C -0.087 4.087 27 C 0.095 3.905 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.033 0.967 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 -4.618 20.677 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.397 6.397 15 C -0.095 4.095 16 N -0.238 5.238 17 C -0.080 4.080 18 C -0.113 4.113 19 C -0.027 4.027 20 C -0.181 4.181 21 C 0.080 3.920 22 F -0.122 7.122 23 C -0.181 4.181 24 C -0.054 4.054 25 C -0.175 4.175 26 C -0.088 4.088 27 C -0.033 4.033 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.666 -3.487 20.462 22.897 hybrid contribution 0.064 -0.093 -0.256 0.279 sum -9.602 -3.580 20.206 22.656 Atomic orbital electron populations 1.22239 0.96756 1.01535 1.02306 1.21438 0.93414 0.83949 1.03013 1.47944 1.64486 1.13319 1.06979 1.19630 0.97208 0.93419 0.80047 1.21320 0.95348 1.32877 1.07076 0.90863 1.24853 0.94976 0.95800 0.97360 1.69891 1.15163 1.45018 1.23589 0.86854 0.81474 0.81646 0.79735 1.19892 1.21130 1.19074 1.20083 0.78656 0.87066 0.84650 1.90650 1.44624 1.17706 1.86751 1.22061 1.02487 0.94311 0.90616 1.61958 1.17683 1.43136 1.01061 1.22323 0.87044 0.96268 1.02348 1.20577 0.99537 1.00260 0.90893 1.19543 0.94692 0.93366 0.95065 1.21078 1.02907 1.02597 0.91520 1.17571 0.97558 0.92567 0.84288 1.91484 1.91121 1.73761 1.55786 1.20835 0.99678 0.97582 1.00048 1.19576 0.97043 0.96825 0.91992 1.20896 0.96528 0.96898 1.03223 1.19436 0.97141 0.98038 0.94168 1.20999 1.00840 0.94514 0.86902 0.92949 0.92178 0.92018 0.89731 0.91601 0.95345 0.94562 0.92571 0.92173 0.88340 0.87548 0.94887 0.90070 0.88743 0.84791 0.84957 0.90684 0.91239 0.90682 0.89123 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -11.63 2.46 -175.05 -0.43 -12.06 16 4 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 5 C -0.53 -14.82 9.94 -34.44 -0.34 -15.16 16 6 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 9 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.51 9.85 7.25 -10.98 -0.08 9.77 16 14 O -0.52 -12.23 14.04 5.56 0.08 -12.15 16 15 C 0.04 0.50 3.98 -4.98 -0.02 0.48 16 16 N -0.51 -7.25 4.42 -237.62 -1.05 -8.30 16 17 C 0.05 0.70 5.14 -3.73 -0.02 0.68 16 18 C -0.08 -0.98 5.94 -27.92 -0.17 -1.15 16 19 C -0.03 -0.32 5.77 -104.60 -0.60 -0.93 16 20 C -0.16 -1.88 9.64 -39.43 -0.38 -2.26 16 21 C 0.10 1.14 7.30 -39.48 -0.29 0.85 16 22 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 23 C -0.16 -1.64 9.67 -39.59 -0.38 -2.02 16 24 C -0.05 -0.53 5.88 -104.53 -0.62 -1.14 16 25 C -0.12 -0.80 9.55 36.01 0.34 -0.46 16 26 C -0.09 -1.01 5.79 -104.60 -0.61 -1.61 16 27 C 0.09 1.03 4.51 -5.15 -0.02 1.01 16 28 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.65 7.13 -51.92 -0.37 0.28 16 34 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.76 7.38 -51.93 -0.38 0.37 16 37 H 0.10 1.12 7.14 -51.93 -0.37 0.75 16 38 H 0.11 1.93 5.82 -51.93 -0.30 1.62 16 39 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.39 8.08 -51.92 -0.42 -0.03 16 46 H 0.07 0.47 6.01 -51.93 -0.31 0.16 16 47 H 0.09 0.85 6.36 -51.93 -0.33 0.52 16 48 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -33.49 382.48 -9.80 -43.29 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.36 Total: -0.10 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.95 Total: -4.90 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.71 Total: -46.97 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.49 -9.80 -43.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337476817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.849 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds