Wall clock time and date at job start Tue Mar 31 2020 18:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.47031 * 2 1 4 4 C 1.46499 * 120.00029 * 269.99782 * 3 2 1 5 5 C 1.50703 * 109.47169 * 270.00094 * 4 3 2 6 6 H 1.08000 * 120.00014 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00073 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99929 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99899 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46768 * 90.00129 * 9 7 5 11 11 H 1.48492 * 109.46906 * 209.99878 * 9 7 5 12 12 H 1.48500 * 109.47249 * 330.00127 * 9 7 5 13 13 C 1.34781 * 120.00450 * 89.99710 * 3 2 1 14 14 O 1.21275 * 120.00517 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99556 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47021 * 179.97438 * 15 13 3 17 17 C 1.47161 * 111.00016 * 293.95095 * 16 15 13 18 18 C 1.52896 * 108.49105 * 165.27374 * 17 16 15 19 19 C 1.50729 * 109.95490 * 50.40034 * 18 17 16 20 20 C 1.38637 * 118.45941 * 163.24939 * 19 18 17 21 21 C 1.38258 * 120.32999 * 179.86689 * 20 19 18 22 22 F 1.35097 * 120.11657 * 179.97438 * 21 20 19 23 23 C 1.38484 * 119.77062 * 359.97297 * 21 20 19 24 24 C 1.37974 * 119.84287 * 0.06514 * 23 21 20 25 25 C 1.50699 * 119.79238 * 179.97438 * 24 23 21 26 26 C 1.37854 * 121.66154 * 343.19979 * 19 18 17 27 27 C 1.46632 * 110.99885 * 170.97338 * 16 15 13 28 28 H 1.08996 * 109.47171 * 300.00495 * 1 2 3 29 29 H 1.08998 * 109.46497 * 59.99871 * 1 2 3 30 30 H 1.09001 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46746 * 239.99818 * 2 1 3 32 32 H 1.09000 * 109.46541 * 119.99583 * 2 1 3 33 33 H 1.09007 * 109.46964 * 30.00199 * 4 3 2 34 34 H 1.09002 * 109.47357 * 149.99976 * 4 3 2 35 35 H 0.96996 * 119.99937 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47374 * 59.99960 * 15 13 3 37 37 H 1.09005 * 109.47285 * 299.99678 * 15 13 3 38 38 H 1.09004 * 109.63405 * 45.57816 * 17 16 15 39 39 H 1.08998 * 109.80280 * 285.07203 * 17 16 15 40 40 H 1.08995 * 109.39340 * 170.54864 * 18 17 16 41 41 H 1.08998 * 109.39489 * 290.25399 * 18 17 16 42 42 H 1.07994 * 119.83581 * 359.82807 * 20 19 18 43 43 H 1.07999 * 120.08204 * 180.02562 * 23 21 20 44 44 H 1.09002 * 109.47307 * 270.02450 * 25 24 23 45 45 H 1.09008 * 109.47005 * 30.02416 * 25 24 23 46 46 H 1.09000 * 109.47484 * 150.02422 * 25 24 23 47 47 H 1.09005 * 109.26904 * 296.17440 * 27 16 15 48 48 H 1.09004 * 109.27636 * 55.64956 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3430 1.2309 -1.0957 7 6 4.1493 2.3896 -2.8779 8 7 5.3912 2.1825 -3.2578 9 14 3.0129 3.4351 -3.9293 10 1 3.1165 4.8554 -3.5081 11 1 3.4059 3.3119 -5.3559 12 1 1.6132 2.9692 -3.7593 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2060 3.5888 17 6 3.7502 2.5102 3.6267 18 6 3.9680 3.7107 4.5483 19 6 3.2731 3.4805 5.8658 20 6 3.6316 4.2688 6.9484 21 6 3.0171 4.0925 8.1744 22 9 3.3702 4.8628 9.2266 23 6 2.0384 3.1237 8.3200 24 6 1.6831 2.3392 7.2420 25 6 0.6183 1.2848 7.4019 26 6 2.3004 2.5146 6.0118 27 6 1.8802 1.6305 4.8669 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7172 2.5730 -4.0836 36 1 2.6229 0.4188 2.5299 37 1 0.9444 1.0115 2.5302 38 1 4.1003 2.7510 2.6229 39 1 4.2995 1.6502 4.0097 40 1 5.0357 3.8454 4.7210 41 1 3.5633 4.6066 4.0774 42 1 4.3951 5.0240 6.8338 43 1 1.5549 2.9819 9.2752 44 1 1.0803 0.3446 7.7032 45 1 -0.0939 1.6004 8.1643 46 1 0.0984 1.1467 6.4539 47 1 0.7947 1.5309 4.8689 48 1 2.3314 0.6457 4.9883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337476817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:37 Heat of formation + Delta-G solvation = -69.065707 kcal Electronic energy + Delta-G solvation = -29052.012255 eV Core-core repulsion = 25020.362307 eV Total energy + Delta-G solvation = -4031.649947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.91627 -41.46889 -40.55096 -38.00725 -36.80503 -35.00536 -34.80653 -32.89724 -31.80540 -30.93089 -30.05813 -28.51136 -27.50781 -25.21750 -24.70966 -24.24998 -23.42611 -22.07364 -20.77905 -19.80137 -19.09288 -18.23886 -17.95358 -17.71210 -17.22489 -16.70584 -16.62695 -16.49633 -16.13948 -15.85574 -15.51906 -15.24154 -14.77542 -14.74913 -14.65673 -14.53092 -14.18423 -14.13504 -13.99387 -13.76525 -13.53300 -13.41575 -13.29085 -13.18281 -13.03399 -12.57204 -12.54222 -12.49717 -12.32433 -12.10031 -12.02415 -11.86304 -11.84279 -11.73065 -11.60363 -10.82678 -10.51230 -9.69275 -9.56888 -9.34704 -9.20057 -8.33674 -6.37873 0.13212 0.21580 1.32246 1.36430 1.44447 1.87734 2.21142 2.30988 2.50730 2.93100 3.01278 3.20410 3.59086 3.62334 3.70723 3.88943 4.07832 4.09925 4.14690 4.19533 4.26929 4.34862 4.37244 4.47889 4.52368 4.60234 4.63271 4.66753 4.69001 4.78883 4.82878 4.89090 4.93312 4.95402 4.97030 5.05348 5.05802 5.07452 5.19667 5.31997 5.40555 5.43290 5.48901 5.53693 5.70191 5.86726 5.95377 6.09511 6.26518 6.63427 6.79412 7.23610 7.52152 8.83252 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002733 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.214718 B =10242.352195 C =11337.764757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.238 1.238 13 C 0.498 3.502 14 O -0.575 6.575 15 C 0.050 3.950 16 N -0.533 5.533 17 C 0.053 3.947 18 C -0.070 4.070 19 C -0.044 4.044 20 C -0.172 4.172 21 C 0.084 3.916 22 F -0.149 7.149 23 C -0.160 4.160 24 C -0.049 4.049 25 C -0.118 4.118 26 C -0.099 4.099 27 C 0.097 3.903 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.115 0.885 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 -6.512 22.360 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.162 1.162 13 C 0.286 3.714 14 O -0.455 6.455 15 C -0.080 4.080 16 N -0.258 5.258 17 C -0.075 4.075 18 C -0.108 4.108 19 C -0.044 4.044 20 C -0.191 4.191 21 C 0.065 3.935 22 F -0.127 7.127 23 C -0.179 4.179 24 C -0.049 4.049 25 C -0.174 4.174 26 C -0.099 4.099 27 C -0.030 4.030 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.133 0.867 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.098 -5.437 22.172 26.319 hybrid contribution 1.200 0.452 -0.695 1.458 sum -11.898 -4.985 21.476 25.053 Atomic orbital electron populations 1.22161 0.93902 1.03620 1.02146 1.21773 0.95672 0.81106 1.03867 1.48067 1.64572 1.15180 1.05691 1.19237 0.94624 0.92932 0.82727 1.21562 0.97082 1.31838 1.06504 0.95273 1.25821 0.96633 0.97214 0.99000 1.70043 1.17404 1.46687 1.24507 0.85749 0.80569 0.79018 0.77820 1.20396 1.20084 1.16156 1.21148 0.77206 0.86748 0.86278 1.90626 1.46804 1.20351 1.87676 1.22017 1.04974 0.93724 0.87330 1.61908 1.16912 1.44273 1.02675 1.22127 0.88108 0.97177 1.00080 1.20453 1.00205 0.98750 0.91366 1.19490 0.95769 0.94713 0.94448 1.21139 1.03360 1.02860 0.91759 1.17769 0.98375 0.93278 0.84047 1.91467 1.91293 1.74055 1.55914 1.21156 0.98855 0.96640 1.01243 1.19904 0.97066 0.97047 0.90903 1.20994 0.95796 0.96313 1.04326 1.19669 0.96994 0.97963 0.95308 1.21133 1.02269 0.94852 0.84703 0.91677 0.93788 0.88733 0.91238 0.88518 0.93632 0.96664 0.92346 0.90230 0.84619 0.91942 0.93789 0.89298 0.91046 0.84530 0.82679 0.89164 0.89846 0.89724 0.86709 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 71.99 0.74 -2.44 16 2 C 0.10 2.65 5.93 86.38 0.51 3.16 16 3 N -0.60 -23.45 2.46 -826.13 -2.03 -25.48 16 4 C 0.23 10.97 4.23 85.63 0.36 11.33 16 5 C -0.53 -31.05 9.94 25.60 0.25 -30.80 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.66 5.47 84.66 0.46 1.12 16 8 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 9 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.24 -10.12 6.54 99.48 0.65 -9.46 16 13 C 0.50 19.29 7.25 87.66 0.64 19.93 16 14 O -0.58 -28.24 14.04 -3.01 -0.04 -28.28 16 15 C 0.05 1.27 3.98 85.56 0.34 1.61 16 16 N -0.53 -14.30 4.42 -905.70 -4.00 -18.30 16 17 C 0.05 1.59 5.14 86.22 0.44 2.04 16 18 C -0.07 -1.93 5.94 29.82 0.18 -1.76 16 19 C -0.04 -1.07 5.77 -19.85 -0.11 -1.18 16 20 C -0.17 -4.01 9.64 22.37 0.22 -3.79 16 21 C 0.08 1.86 7.30 22.33 0.16 2.02 16 22 F -0.15 -3.43 17.27 44.97 0.78 -2.66 16 23 C -0.16 -2.84 9.67 22.27 0.22 -2.62 16 24 C -0.05 -0.80 5.88 -19.81 -0.12 -0.92 16 25 C -0.12 -1.05 9.55 71.24 0.68 -0.37 16 26 C -0.10 -2.06 5.79 -19.85 -0.12 -2.18 16 27 C 0.10 1.79 4.51 85.59 0.39 2.17 16 28 H 0.06 1.14 7.22 -2.39 -0.02 1.12 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 32 H 0.10 2.00 6.44 -2.39 -0.02 1.98 16 33 H 0.05 2.04 7.13 -2.38 -0.02 2.02 16 34 H 0.02 0.80 6.85 -2.39 -0.02 0.79 16 35 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.08 1.75 7.38 -2.39 -0.02 1.73 16 37 H 0.14 2.45 7.14 -2.38 -0.02 2.44 16 38 H 0.06 2.44 5.82 -2.38 -0.01 2.42 16 39 H 0.04 1.18 8.05 -2.39 -0.02 1.16 16 40 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 42 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 0.55 8.08 -2.38 -0.02 0.53 16 46 H 0.08 0.62 6.01 -2.39 -0.01 0.60 16 47 H 0.12 1.58 6.36 -2.38 -0.02 1.57 16 48 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 Total: -1.00 -78.93 382.48 3.03 -75.90 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.91 Total: 14.49 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 5.24 Total: -2.68 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -5.73 Total: -103.36 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.04 Total: -28.28 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -78.93 3.03 -75.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337476817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.831 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds