Wall clock time and date at job start Tue Mar 31 2020 18:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47582 * 2 1 4 4 C 1.50702 * 109.46895 * 239.99784 * 2 1 3 5 5 O 1.21282 * 120.00652 * 257.89533 * 4 2 1 6 6 N 1.34781 * 119.99816 * 77.90162 * 4 2 1 7 7 C 1.46502 * 120.00111 * 4.92441 * 6 4 2 8 8 C 1.50701 * 109.47041 * 84.47219 * 7 6 4 9 9 H 1.08000 * 119.99792 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99719 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46852 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47373 * 119.99675 * 12 10 8 15 15 H 1.48498 * 109.47064 * 240.00092 * 12 10 8 16 16 C 1.46499 * 119.99882 * 184.92907 * 6 4 2 17 17 C 1.53005 * 109.47305 * 89.99986 * 16 6 4 18 18 N 1.46893 * 109.46875 * 179.97438 * 17 16 6 19 19 C 1.47015 * 111.00556 * 293.63193 * 18 17 16 20 20 C 1.53099 * 109.26211 * 177.61053 * 19 18 17 21 21 O 1.43015 * 109.25577 * 56.84942 * 20 19 18 22 22 C 1.43018 * 113.73946 * 301.32760 * 21 20 19 23 23 C 1.47013 * 110.99926 * 169.99626 * 18 17 16 24 24 C 1.53003 * 109.47147 * 120.00436 * 2 1 3 25 25 C 1.52997 * 109.46709 * 294.99481 * 24 2 1 26 26 F 1.39903 * 109.47005 * 175.00140 * 24 2 1 27 27 F 1.39891 * 109.47462 * 54.99789 * 24 2 1 28 28 H 1.09006 * 109.47566 * 57.73380 * 1 2 3 29 29 H 1.09004 * 109.47520 * 177.73661 * 1 2 3 30 30 H 1.09004 * 109.47216 * 297.73205 * 1 2 3 31 31 H 1.08996 * 109.47273 * 204.47968 * 7 6 4 32 32 H 1.09007 * 109.46894 * 324.47788 * 7 6 4 33 33 H 0.97006 * 120.00019 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.46960 * 209.99757 * 16 6 4 35 35 H 1.08999 * 109.47261 * 329.99599 * 16 6 4 36 36 H 1.09000 * 109.46561 * 299.99409 * 17 16 6 37 37 H 1.08999 * 109.47277 * 59.99622 * 17 16 6 38 38 H 1.09004 * 109.50553 * 297.54870 * 19 18 17 39 39 H 1.09000 * 109.50595 * 57.67053 * 19 18 17 40 40 H 1.08993 * 109.50365 * 296.91004 * 20 19 18 41 41 H 1.08995 * 109.53807 * 176.80457 * 20 19 18 42 42 H 1.08995 * 109.50528 * 298.74042 * 22 21 20 43 43 H 1.08999 * 109.54344 * 178.63166 * 22 21 20 44 44 H 1.09003 * 109.50863 * 302.32559 * 23 18 17 45 45 H 1.09007 * 109.50795 * 62.41132 * 23 18 17 46 46 H 1.08997 * 109.47581 * 300.00365 * 25 24 2 47 47 H 1.08996 * 109.47073 * 60.00385 * 25 24 2 48 48 H 1.09002 * 109.47000 * 180.02562 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.4420 -1.8490 -1.1486 6 7 2.0262 -0.0805 -2.4220 7 6 1.6335 1.3285 -2.5037 8 6 2.8244 2.2003 -2.1989 9 1 3.7784 1.7498 -1.9679 10 6 2.6960 3.5730 -2.2149 11 7 1.5344 4.1215 -2.4967 12 14 4.1723 4.6536 -1.8378 13 1 5.3527 3.7980 -1.5553 14 1 4.4597 5.5244 -3.0059 15 1 3.8779 5.4975 -0.6519 16 6 2.4121 -0.8049 -3.6355 17 6 1.1736 -1.4513 -4.2594 18 7 1.5606 -2.1770 -5.4764 19 6 2.0249 -1.2493 -6.5181 20 6 2.4732 -2.0496 -7.7438 21 8 1.3913 -2.8701 -8.1928 22 6 0.9145 -3.7864 -7.2035 23 6 0.4506 -3.0036 -5.9723 24 6 2.0400 -0.7214 1.2492 25 6 1.6353 0.0689 2.4952 26 9 3.4343 -0.8217 1.1932 27 9 1.4822 -2.0029 1.3081 28 1 -0.3634 0.5486 -0.8690 29 1 -0.3634 -1.0269 -0.0406 30 1 -0.3634 0.4782 0.9096 31 1 1.2707 1.5470 -3.5080 32 1 0.8427 1.5278 -1.7804 33 1 1.4441 5.0873 -2.5084 34 1 2.8569 -0.1098 -4.3476 35 1 3.1369 -1.5785 -3.3818 36 1 0.7289 -2.1464 -3.5472 37 1 0.4488 -0.6777 -4.5130 38 1 1.2116 -0.5798 -6.7980 39 1 2.8632 -0.6655 -6.1380 40 1 3.3215 -2.6797 -7.4767 41 1 2.7650 -1.3645 -8.5397 42 1 1.7175 -4.4670 -6.9208 43 1 0.0789 -4.3574 -7.6081 44 1 0.1397 -3.7005 -5.1939 45 1 -0.3883 -2.3623 -6.2428 46 1 2.0699 1.0674 2.4494 47 1 0.5490 0.1471 2.5389 48 1 1.9990 -0.4448 3.3852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339587310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:28 Heat of formation + Delta-G solvation = -180.330697 kcal Electronic energy + Delta-G solvation = -31110.535109 eV Core-core repulsion = 26643.291125 eV Total energy + Delta-G solvation = -4467.243984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.44933 -46.42524 -39.71142 -39.14256 -36.19043 -34.89579 -34.22421 -32.69613 -31.25699 -30.19244 -29.17593 -27.32575 -26.07963 -24.95160 -24.04828 -23.06928 -22.41080 -20.78899 -20.30147 -18.50882 -17.21414 -16.92899 -16.61900 -16.46069 -16.19895 -16.14129 -15.45160 -15.22340 -15.09232 -14.91296 -14.71074 -14.41845 -14.17608 -13.66002 -13.34492 -13.30309 -13.00190 -12.87588 -12.71297 -12.49053 -12.36621 -12.32198 -12.25833 -12.04217 -11.82561 -11.63852 -11.43574 -11.42584 -11.33500 -11.22723 -10.95326 -10.85316 -10.70996 -10.45272 -10.35956 -10.15355 -9.84966 -9.69329 -9.06366 -8.65604 -8.37123 -7.80848 -6.28666 -4.36569 3.15346 3.23771 3.25781 3.31576 3.48373 3.79191 4.02181 4.19689 4.26363 4.40754 4.77083 4.79838 4.85052 4.97907 5.00047 5.04610 5.10425 5.23466 5.27618 5.36641 5.44017 5.50967 5.53918 5.55637 5.61248 5.70409 5.74127 5.79790 5.82872 5.91565 5.92548 5.93592 5.98420 6.18256 6.24775 6.35546 6.43059 6.62311 6.96583 7.01335 7.06892 7.08558 7.44072 7.67575 7.95099 8.20028 8.69738 8.91098 9.32568 10.77624 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.004333 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.000649 B = 6460.057540 C = 8739.220676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.156 4.156 3 H 0.139 0.861 4 C 0.526 3.474 5 O -0.554 6.554 6 N -0.593 5.593 7 C 0.233 3.767 8 C -0.541 4.541 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.125 3.875 17 C 0.045 3.955 18 N -0.533 5.533 19 C 0.012 3.988 20 C 0.065 3.935 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.019 3.981 24 C 0.308 3.692 25 C -0.195 4.195 26 F -0.197 7.197 27 F -0.196 7.196 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -8.324 -1.115 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 H 0.156 0.844 4 C 0.313 3.687 5 O -0.433 6.433 6 N -0.324 5.324 7 C 0.113 3.887 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.001 3.999 17 C -0.084 4.084 18 N -0.259 5.259 19 C -0.116 4.116 20 C -0.012 4.012 21 O -0.308 6.308 22 C -0.012 4.012 23 C -0.110 4.110 24 C 0.271 3.729 25 C -0.252 4.252 26 F -0.178 7.178 27 F -0.177 7.177 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.421 -9.056 -1.180 9.752 hybrid contribution 0.251 1.403 0.232 1.444 sum -3.170 -7.653 -0.948 8.338 Atomic orbital electron populations 1.21775 0.91253 1.02935 1.03877 1.22424 0.99518 1.03778 0.92006 0.84366 1.19961 0.78194 0.85946 0.84612 1.90672 1.48025 1.18675 1.85946 1.48082 1.65549 1.13523 1.05251 1.19566 0.96246 0.74186 0.98706 1.21565 0.96613 0.91017 1.48762 0.91873 1.24931 0.96119 0.97901 0.94680 1.69925 1.23370 1.11496 1.48007 0.86486 0.82811 0.80399 0.78157 1.19496 1.20781 1.20721 1.21181 0.95703 0.96349 0.86652 1.22505 0.98027 0.96787 0.91036 1.62125 1.35101 1.23788 1.04865 1.22881 1.01361 0.94856 0.92494 1.22678 0.89278 0.93456 0.95820 1.87956 1.52004 1.52343 1.38456 1.22642 0.99276 0.91306 0.87967 1.22763 0.92766 0.97469 0.97992 1.20707 0.75057 0.80362 0.96763 1.22817 1.04442 1.01939 0.96031 1.93011 1.30807 1.96459 1.97491 1.92983 1.84918 1.42352 1.97404 0.90157 0.91892 0.91144 0.94635 0.94000 0.92488 0.90539 0.89941 0.90646 0.94390 0.93762 0.88904 0.92235 0.88490 0.92271 0.88686 0.89699 0.94053 0.88996 0.89168 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.55 37.15 0.32 -1.78 16 2 C -0.16 -2.80 1.57 -91.77 -0.14 -2.94 16 3 H 0.14 2.64 6.63 -51.93 -0.34 2.29 16 4 C 0.53 10.99 6.50 -10.98 -0.07 10.92 16 5 O -0.55 -12.91 14.63 5.56 0.08 -12.83 16 6 N -0.59 -12.12 2.47 -175.05 -0.43 -12.55 16 7 C 0.23 5.18 4.80 -5.19 -0.02 5.16 16 8 C -0.54 -13.45 8.64 -34.44 -0.30 -13.75 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 12 Si 0.89 19.88 29.54 -169.99 -5.02 14.85 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 C 0.13 2.30 5.36 -4.04 -0.02 2.28 16 17 C 0.05 0.72 5.28 -3.83 -0.02 0.70 16 18 N -0.53 -7.59 4.73 -234.30 -1.11 -8.70 16 19 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 20 C 0.06 0.75 7.01 37.21 0.26 1.01 16 21 O -0.39 -4.98 10.83 -35.23 -0.38 -5.36 16 22 C 0.07 0.71 7.01 37.21 0.26 0.97 16 23 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 24 C 0.31 5.29 1.51 -26.73 -0.04 5.25 16 25 C -0.19 -2.42 9.14 37.16 0.34 -2.08 16 26 F -0.20 -3.93 16.28 2.25 0.04 -3.90 16 27 F -0.20 -3.61 15.44 2.25 0.03 -3.58 16 28 H 0.08 1.25 6.34 -51.93 -0.33 0.92 16 29 H 0.06 0.93 7.76 -51.93 -0.40 0.52 16 30 H 0.07 0.85 6.46 -51.93 -0.34 0.51 16 31 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.04 0.93 4.94 -51.93 -0.26 0.68 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.08 1.39 6.45 -51.93 -0.33 1.05 16 35 H 0.08 1.62 7.36 -51.93 -0.38 1.24 16 36 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 37 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.23 6.38 -51.93 -0.33 0.90 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.09 0.94 6.52 -51.93 -0.34 0.60 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -29.91 382.80 -7.52 -37.43 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.66 Total: 3.71 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 0.42 Total: 7.69 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.80 Total: -43.78 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.30 Total: -18.20 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.07 Total: -7.47 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.91 -7.52 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339587310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.898 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds