Wall clock time and date at job start Tue Mar 31 2020 18:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47582 * 2 1 4 4 C 1.50702 * 109.46895 * 239.99784 * 2 1 3 5 5 O 1.21282 * 120.00652 * 257.89533 * 4 2 1 6 6 N 1.34781 * 119.99816 * 77.90162 * 4 2 1 7 7 C 1.46502 * 120.00111 * 4.92441 * 6 4 2 8 8 C 1.50701 * 109.47041 * 84.47219 * 7 6 4 9 9 H 1.08000 * 119.99792 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99719 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46852 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47373 * 119.99675 * 12 10 8 15 15 H 1.48498 * 109.47064 * 240.00092 * 12 10 8 16 16 C 1.46499 * 119.99882 * 184.92907 * 6 4 2 17 17 C 1.53005 * 109.47305 * 89.99986 * 16 6 4 18 18 N 1.46893 * 109.46875 * 179.97438 * 17 16 6 19 19 C 1.47015 * 111.00556 * 293.63193 * 18 17 16 20 20 C 1.53099 * 109.26211 * 177.61053 * 19 18 17 21 21 O 1.43015 * 109.25577 * 56.84942 * 20 19 18 22 22 C 1.43018 * 113.73946 * 301.32760 * 21 20 19 23 23 C 1.47013 * 110.99926 * 169.99626 * 18 17 16 24 24 C 1.53003 * 109.47147 * 120.00436 * 2 1 3 25 25 C 1.52997 * 109.46709 * 294.99481 * 24 2 1 26 26 F 1.39903 * 109.47005 * 175.00140 * 24 2 1 27 27 F 1.39891 * 109.47462 * 54.99789 * 24 2 1 28 28 H 1.09006 * 109.47566 * 57.73380 * 1 2 3 29 29 H 1.09004 * 109.47520 * 177.73661 * 1 2 3 30 30 H 1.09004 * 109.47216 * 297.73205 * 1 2 3 31 31 H 1.08996 * 109.47273 * 204.47968 * 7 6 4 32 32 H 1.09007 * 109.46894 * 324.47788 * 7 6 4 33 33 H 0.97006 * 120.00019 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.46960 * 209.99757 * 16 6 4 35 35 H 1.08999 * 109.47261 * 329.99599 * 16 6 4 36 36 H 1.09000 * 109.46561 * 299.99409 * 17 16 6 37 37 H 1.08999 * 109.47277 * 59.99622 * 17 16 6 38 38 H 1.09004 * 109.50553 * 297.54870 * 19 18 17 39 39 H 1.09000 * 109.50595 * 57.67053 * 19 18 17 40 40 H 1.08993 * 109.50365 * 296.91004 * 20 19 18 41 41 H 1.08995 * 109.53807 * 176.80457 * 20 19 18 42 42 H 1.08995 * 109.50528 * 298.74042 * 22 21 20 43 43 H 1.08999 * 109.54344 * 178.63166 * 22 21 20 44 44 H 1.09003 * 109.50863 * 302.32559 * 23 18 17 45 45 H 1.09007 * 109.50795 * 62.41132 * 23 18 17 46 46 H 1.08997 * 109.47581 * 300.00365 * 25 24 2 47 47 H 1.08996 * 109.47073 * 60.00385 * 25 24 2 48 48 H 1.09002 * 109.47000 * 180.02562 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.4420 -1.8490 -1.1486 6 7 2.0262 -0.0805 -2.4220 7 6 1.6335 1.3285 -2.5037 8 6 2.8244 2.2003 -2.1989 9 1 3.7784 1.7498 -1.9679 10 6 2.6960 3.5730 -2.2149 11 7 1.5344 4.1215 -2.4967 12 14 4.1723 4.6536 -1.8378 13 1 5.3527 3.7980 -1.5553 14 1 4.4597 5.5244 -3.0059 15 1 3.8779 5.4975 -0.6519 16 6 2.4121 -0.8049 -3.6355 17 6 1.1736 -1.4513 -4.2594 18 7 1.5606 -2.1770 -5.4764 19 6 2.0249 -1.2493 -6.5181 20 6 2.4732 -2.0496 -7.7438 21 8 1.3913 -2.8701 -8.1928 22 6 0.9145 -3.7864 -7.2035 23 6 0.4506 -3.0036 -5.9723 24 6 2.0400 -0.7214 1.2492 25 6 1.6353 0.0689 2.4952 26 9 3.4343 -0.8217 1.1932 27 9 1.4822 -2.0029 1.3081 28 1 -0.3634 0.5486 -0.8690 29 1 -0.3634 -1.0269 -0.0406 30 1 -0.3634 0.4782 0.9096 31 1 1.2707 1.5470 -3.5080 32 1 0.8427 1.5278 -1.7804 33 1 1.4441 5.0873 -2.5084 34 1 2.8569 -0.1098 -4.3476 35 1 3.1369 -1.5785 -3.3818 36 1 0.7289 -2.1464 -3.5472 37 1 0.4488 -0.6777 -4.5130 38 1 1.2116 -0.5798 -6.7980 39 1 2.8632 -0.6655 -6.1380 40 1 3.3215 -2.6797 -7.4767 41 1 2.7650 -1.3645 -8.5397 42 1 1.7175 -4.4670 -6.9208 43 1 0.0789 -4.3574 -7.6081 44 1 0.1397 -3.7005 -5.1939 45 1 -0.3883 -2.3623 -6.2428 46 1 2.0699 1.0674 2.4494 47 1 0.5490 0.1471 2.5389 48 1 1.9990 -0.4448 3.3852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339587310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:27 Heat of formation + Delta-G solvation = -199.127947 kcal Electronic energy + Delta-G solvation = -31111.350219 eV Core-core repulsion = 26643.291125 eV Total energy + Delta-G solvation = -4468.059094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.86733 -47.86680 -41.11339 -40.41814 -37.49208 -36.49930 -35.55255 -34.57429 -32.24113 -31.49221 -30.40543 -29.05595 -27.36528 -26.26191 -25.06563 -24.88563 -23.71203 -22.12305 -21.38778 -20.08916 -18.80864 -18.55013 -18.06051 -17.93639 -17.57794 -17.15059 -16.86258 -16.55781 -16.33682 -16.19357 -16.04910 -15.95138 -15.47657 -14.96142 -14.79076 -14.63929 -14.45519 -14.26183 -14.15146 -13.98656 -13.80567 -13.56495 -13.45586 -13.25087 -13.17663 -12.97245 -12.90805 -12.81181 -12.61572 -12.55637 -12.50377 -12.34890 -12.13343 -11.90230 -11.73900 -11.66780 -11.47740 -10.77704 -10.73275 -10.55074 -9.62636 -9.43972 -8.23248 -6.37334 1.38610 1.43677 1.52712 1.63167 2.02719 2.40106 2.76048 2.85079 2.95097 3.07287 3.15794 3.40363 3.50602 3.76595 3.86037 3.95589 3.97455 4.05808 4.16157 4.16950 4.28509 4.32005 4.35244 4.40382 4.55621 4.60842 4.68682 4.71122 4.73892 4.75221 4.78596 4.81345 4.82995 4.87506 4.93200 4.98680 5.03851 5.11258 5.30376 5.60687 5.73504 5.86220 5.88960 6.03245 6.14042 6.46610 6.76212 7.20493 7.36537 8.82088 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.004333 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.000649 B = 6460.057540 C = 8739.220676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.155 4.155 3 H 0.127 0.873 4 C 0.517 3.483 5 O -0.583 6.583 6 N -0.595 5.595 7 C 0.248 3.752 8 C -0.550 4.550 9 H 0.046 0.954 10 C 0.032 3.968 11 N -0.912 5.912 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.272 1.272 16 C 0.127 3.873 17 C 0.063 3.937 18 N -0.541 5.541 19 C 0.012 3.988 20 C 0.068 3.932 21 O -0.402 6.402 22 C 0.066 3.934 23 C 0.017 3.983 24 C 0.296 3.704 25 C -0.186 4.186 26 F -0.219 7.219 27 F -0.205 7.205 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.021 0.979 32 H 0.046 0.954 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.032 0.968 38 H 0.036 0.964 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.062 0.938 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.038 0.962 46 H 0.099 0.901 47 H 0.115 0.885 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -8.061 -0.716 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 H 0.145 0.855 4 C 0.306 3.694 5 O -0.465 6.465 6 N -0.325 5.325 7 C 0.128 3.872 8 C -0.588 4.588 9 H 0.064 0.936 10 C -0.169 4.169 11 N -0.551 5.551 12 Si 0.774 3.226 13 H -0.202 1.202 14 H -0.205 1.205 15 H -0.197 1.197 16 C 0.003 3.997 17 C -0.066 4.066 18 N -0.267 5.267 19 C -0.116 4.116 20 C -0.009 4.009 21 O -0.321 6.321 22 C -0.011 4.011 23 C -0.111 4.111 24 C 0.259 3.741 25 C -0.243 4.243 26 F -0.200 7.200 27 F -0.186 7.186 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.139 0.861 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.118 0.882 47 H 0.134 0.866 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.036 -8.794 -0.793 9.708 hybrid contribution 0.458 1.278 0.060 1.359 sum -3.579 -7.516 -0.732 8.356 Atomic orbital electron populations 1.21787 0.88789 1.03311 1.05290 1.22481 1.01536 1.02601 0.91039 0.85477 1.20561 0.77618 0.85800 0.85452 1.90646 1.49389 1.19988 1.86434 1.48109 1.65280 1.13029 1.06056 1.19278 0.95478 0.74692 0.97742 1.21645 0.96561 0.91675 1.48941 0.93607 1.25498 0.98171 0.98796 0.94465 1.69984 1.24635 1.11958 1.48516 0.85646 0.79858 0.78806 0.78240 1.20185 1.20480 1.19723 1.21203 0.96577 0.95789 0.86121 1.22202 0.96372 0.96314 0.91747 1.62133 1.36075 1.23815 1.04634 1.22916 1.00842 0.94923 0.92939 1.22738 0.89068 0.93583 0.95501 1.87943 1.52288 1.52675 1.39161 1.22782 1.00277 0.90888 0.87115 1.22865 0.91992 0.97315 0.98915 1.21252 0.73912 0.80379 0.98517 1.22845 1.06177 1.01479 0.93820 1.92964 1.32756 1.96568 1.97685 1.92958 1.84906 1.43230 1.97510 0.91025 0.91787 0.87623 0.96082 0.93598 0.92142 0.90650 0.91462 0.91482 0.94938 0.94550 0.89466 0.91827 0.86599 0.91942 0.86141 0.88921 0.94330 0.88191 0.86623 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.55 71.98 0.62 -3.20 16 2 C -0.15 -5.51 1.57 -11.54 -0.02 -5.53 16 3 H 0.13 4.83 6.63 -2.39 -0.02 4.81 16 4 C 0.52 22.02 6.50 87.66 0.57 22.59 16 5 O -0.58 -27.86 14.63 -3.04 -0.04 -27.90 16 6 N -0.59 -24.93 2.47 -826.12 -2.04 -26.97 16 7 C 0.25 11.25 4.80 85.63 0.41 11.66 16 8 C -0.55 -27.59 8.64 25.60 0.22 -27.37 16 9 H 0.05 2.43 7.81 -2.91 -0.02 2.40 16 10 C 0.03 1.61 5.46 84.65 0.46 2.07 16 11 N -0.91 -47.23 13.29 21.45 0.28 -46.95 16 12 Si 0.95 40.38 29.54 68.60 2.03 42.41 16 13 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 C 0.13 4.82 5.36 86.38 0.46 5.28 16 17 C 0.06 2.06 5.28 86.31 0.46 2.51 16 18 N -0.54 -15.39 4.73 -895.20 -4.23 -19.62 16 19 C 0.01 0.31 5.44 86.31 0.47 0.78 16 20 C 0.07 1.50 7.01 72.02 0.50 2.01 16 21 O -0.40 -9.67 10.83 -148.98 -1.61 -11.29 16 22 C 0.07 1.34 7.01 72.01 0.50 1.84 16 23 C 0.02 0.40 5.64 86.31 0.49 0.89 16 24 C 0.30 9.92 1.51 30.59 0.05 9.97 16 25 C -0.19 -4.14 9.14 71.98 0.66 -3.49 16 26 F -0.22 -8.79 16.28 44.97 0.73 -8.06 16 27 F -0.20 -7.43 15.44 44.97 0.69 -6.73 16 28 H 0.07 2.16 6.34 -2.38 -0.02 2.14 16 29 H 0.06 1.80 7.76 -2.38 -0.02 1.78 16 30 H 0.11 2.22 6.46 -2.38 -0.02 2.21 16 31 H 0.02 1.01 8.03 -2.39 -0.02 1.00 16 32 H 0.05 2.06 4.94 -2.38 -0.01 2.04 16 33 H 0.27 13.21 8.31 -92.70 -0.77 12.44 16 34 H 0.08 2.84 6.45 -2.39 -0.02 2.82 16 35 H 0.07 2.76 7.36 -2.39 -0.02 2.74 16 36 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 37 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 38 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.09 2.36 6.38 -2.39 -0.02 2.34 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.12 2.09 8.14 -2.39 -0.02 2.08 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 45 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.12 1.96 6.52 -2.39 -0.02 1.95 16 48 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -64.18 382.80 2.61 -61.56 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.95 Total: 23.53 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 5.85 Total: 20.02 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -5.99 Total: -93.54 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.66 Total: -39.19 kcal Atomic # 9 Polarization: -16.22 SS G_CDS: 1.43 Total: -14.79 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -64.18 2.61 -61.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339587310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.565 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds