Wall clock time and date at job start Tue Mar 31 2020 18:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 120.00089 * 2 1 4 4 C 1.50698 * 109.46569 * 269.99394 * 3 2 1 5 5 H 1.07998 * 120.00273 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99726 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99659 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99919 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46826 * 90.00516 * 8 6 4 10 10 H 1.48498 * 109.46868 * 210.00011 * 8 6 4 11 11 H 1.48497 * 109.47081 * 330.00444 * 8 6 4 12 12 C 1.34777 * 120.00107 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00142 * 180.02562 * 12 2 1 14 14 C 1.50707 * 119.99877 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.46900 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47001 * 180.02562 * 15 14 12 17 17 C 1.48534 * 111.00336 * 52.60323 * 16 15 14 18 18 C 1.54933 * 103.22918 * 159.72037 * 17 16 15 19 19 C 1.54591 * 102.92615 * 322.58639 * 18 17 16 20 20 H 1.08999 * 110.39236 * 263.00205 * 19 18 17 21 21 C 1.50697 * 110.31007 * 140.86793 * 19 18 17 22 22 C 1.38267 * 119.99229 * 304.01865 * 21 19 18 23 23 C 1.38223 * 120.05318 * 179.72406 * 22 21 19 24 24 C 1.38219 * 120.02153 * 0.54338 * 23 22 21 25 25 C 1.38433 * 119.97835 * 359.72620 * 24 23 22 26 26 F 1.35095 * 120.02854 * 180.02562 * 25 24 23 27 27 C 1.38179 * 119.98242 * 124.28697 * 21 19 18 28 28 C 1.47906 * 111.00463 * 170.00034 * 16 15 14 29 29 H 1.08995 * 109.47471 * 270.00562 * 1 2 3 30 30 H 1.08998 * 109.46830 * 30.00934 * 1 2 3 31 31 H 1.09004 * 109.46930 * 150.00202 * 1 2 3 32 32 H 1.08994 * 109.46965 * 29.99468 * 3 2 1 33 33 H 1.08998 * 109.47142 * 149.99624 * 3 2 1 34 34 H 0.97003 * 119.99352 * 179.97438 * 7 6 4 35 35 H 1.09006 * 109.46686 * 60.00042 * 14 12 2 36 36 H 1.09001 * 109.47159 * 300.00017 * 14 12 2 37 37 H 1.08996 * 109.47450 * 60.00569 * 15 14 12 38 38 H 1.09001 * 109.47299 * 300.00018 * 15 14 12 39 39 H 1.09004 * 110.66939 * 278.16097 * 17 16 15 40 40 H 1.09002 * 110.66619 * 41.28493 * 17 16 15 41 41 H 1.09008 * 110.72472 * 204.22643 * 18 17 16 42 42 H 1.09006 * 110.87315 * 81.02185 * 18 17 16 43 43 H 1.08003 * 119.97055 * 359.97438 * 22 21 19 44 44 H 1.07998 * 119.98924 * 180.27295 * 23 22 21 45 45 H 1.08006 * 120.01083 * 179.74979 * 24 23 22 46 46 H 1.07999 * 120.01393 * 0.02562 * 27 21 19 47 47 H 1.09003 * 109.91125 * 333.50977 * 28 16 15 48 48 H 1.08999 * 109.91852 * 94.80110 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1262 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6733 8 14 3.4382 3.4165 -3.4341 9 1 2.3081 4.2588 -3.9016 10 1 4.6982 4.2000 -3.4961 11 1 3.5564 2.2191 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6451 -4.9074 -0.0001 17 6 0.6500 -4.9471 -1.1021 18 6 0.3784 -6.4620 -1.2802 19 6 1.7714 -7.0922 -1.0519 20 1 2.2646 -7.2794 -2.0057 21 6 1.6439 -8.3738 -0.2694 22 6 1.0117 -8.3728 0.9603 23 6 0.8890 -9.5486 1.6765 24 6 1.4081 -10.7248 1.1690 25 6 2.0461 -10.7260 -0.0595 26 9 2.5534 -11.8752 -0.5567 27 6 2.1636 -9.5484 -0.7787 28 6 2.5578 -6.0463 -0.2399 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 4.0302 4.4439 -0.8506 35 1 0.7590 -2.5302 -0.8898 36 1 0.7583 -2.5299 0.8903 37 1 3.0062 -3.5775 0.8905 38 1 3.0063 -3.5774 -0.8895 39 1 -0.2623 -4.4237 -0.8157 40 1 1.0687 -4.5214 -2.0140 41 1 0.0197 -6.6737 -2.2875 42 1 -0.3333 -6.8191 -0.5358 43 1 0.6100 -7.4532 1.3597 44 1 0.3911 -9.5475 2.6348 45 1 1.3156 -11.6427 1.7306 46 1 2.6615 -9.5481 -1.7371 47 1 3.4268 -5.7126 -0.8069 48 1 2.8739 -6.4754 0.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361994685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:41 Heat of formation + Delta-G solvation = -54.366136 kcal Electronic energy + Delta-G solvation = -27844.102218 eV Core-core repulsion = 23813.089692 eV Total energy + Delta-G solvation = -4031.012526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.20609 -40.30289 -39.11919 -38.18619 -34.87200 -34.04463 -32.62628 -31.44482 -30.69370 -29.72630 -28.28734 -27.46610 -25.76632 -24.11826 -23.18074 -23.01327 -22.38874 -20.66211 -20.40730 -18.28680 -17.67989 -16.87252 -16.58757 -16.52138 -16.43341 -15.93126 -15.81710 -15.34305 -15.19901 -15.03211 -14.43990 -14.20905 -14.14235 -13.82595 -13.50280 -13.26306 -12.84926 -12.79333 -12.59575 -12.31471 -12.18782 -12.13003 -11.90629 -11.82454 -11.68211 -11.55028 -11.39024 -11.21354 -11.07180 -10.94943 -10.88368 -10.79080 -10.55733 -10.16822 -9.63601 -9.30763 -8.96565 -8.89659 -8.53303 -8.44642 -7.64153 -6.05234 -4.09995 0.80676 0.85454 3.20741 3.28522 3.35050 3.38181 3.45702 3.70219 3.84067 4.12680 4.20069 4.34648 4.43575 4.49785 4.56942 4.69872 4.87315 4.93518 5.00354 5.09305 5.11246 5.21352 5.24002 5.27533 5.32982 5.46076 5.48249 5.57939 5.59819 5.70893 5.74161 5.75230 5.78897 5.80341 5.87602 5.92197 5.99537 6.05925 6.13517 6.20597 6.21123 6.55229 6.74508 6.91720 7.06013 7.44263 7.53979 7.91188 8.22795 8.42258 8.89380 9.09717 9.54996 11.02802 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025857 B = 0.001875 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.608942 B =14929.499373 C =15302.082522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.138 4.138 15 C 0.063 3.937 16 N -0.516 5.516 17 C 0.029 3.971 18 C -0.115 4.115 19 C -0.063 4.063 20 H 0.085 0.915 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.090 4.090 24 C -0.160 4.160 25 C 0.096 3.904 26 F -0.142 7.142 27 C -0.153 4.153 28 C 0.044 3.956 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.052 0.948 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 -26.641 2.515 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.178 4.178 15 C -0.065 4.065 16 N -0.241 5.241 17 C -0.099 4.099 18 C -0.153 4.153 19 C -0.082 4.082 20 H 0.104 0.896 21 C -0.041 4.041 22 C -0.136 4.136 23 C -0.108 4.108 24 C -0.179 4.179 25 C 0.077 3.923 26 F -0.121 7.121 27 C -0.172 4.172 28 C -0.084 4.084 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.156 0.844 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.070 0.930 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.229 -26.509 3.056 28.236 hybrid contribution 0.652 0.302 -1.886 2.018 sum -8.577 -26.207 1.170 27.600 Atomic orbital electron populations 1.21627 0.81459 1.02477 1.00419 1.48163 1.06176 1.07896 1.71326 1.19285 0.92580 0.78163 0.97459 1.21424 1.36507 1.06223 0.92298 0.92556 1.24950 0.95393 0.96430 0.97439 1.69934 1.38385 1.14309 1.30705 0.86494 0.77698 0.78559 0.84648 1.20635 1.21061 1.19956 1.20289 0.88075 0.85162 0.77464 1.90666 1.13996 1.87347 1.50302 1.21700 0.99286 0.92925 1.03899 1.22025 0.94961 0.86849 1.02650 1.64870 1.13789 1.02661 1.42750 1.23308 0.97089 0.96095 0.93392 1.22637 0.95642 0.94702 1.02288 1.21088 0.97437 0.91666 0.98004 0.89625 1.19634 0.96033 0.93714 0.94684 1.21220 0.99250 0.98844 0.94268 1.21044 0.98226 0.91638 0.99866 1.21156 1.01275 1.00137 0.95346 1.17689 0.98622 0.81969 0.94037 1.91497 1.85209 1.47877 1.87524 1.21073 1.03414 0.91356 1.01316 1.22970 0.94652 0.90904 0.99907 0.93718 0.90863 0.92496 0.95038 0.93843 0.92714 0.89626 0.88863 0.89702 0.93618 0.89525 0.93301 0.90793 0.90160 0.84439 0.84945 0.84973 0.84904 0.93002 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.73 2.86 -182.95 -0.52 -13.25 16 3 C 0.24 6.43 5.16 -5.19 -0.03 6.40 16 4 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.50 10.31 7.67 -10.98 -0.08 10.22 16 13 O -0.54 -13.61 15.56 5.56 0.09 -13.52 16 14 C -0.14 -1.95 3.91 -27.88 -0.11 -2.06 16 15 C 0.06 0.87 4.32 -3.83 -0.02 0.85 16 16 N -0.52 -5.55 5.40 -230.45 -1.24 -6.79 16 17 C 0.03 0.26 5.10 -1.90 -0.01 0.25 16 18 C -0.11 -0.86 6.49 -24.88 -0.16 -1.02 16 19 C -0.06 -0.50 3.22 -90.42 -0.29 -0.79 16 20 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 21 C -0.04 -0.32 4.72 -104.63 -0.49 -0.82 16 22 C -0.12 -0.89 8.16 -39.58 -0.32 -1.22 16 23 C -0.09 -0.61 10.04 -39.59 -0.40 -1.01 16 24 C -0.16 -1.21 10.03 -39.52 -0.40 -1.60 16 25 C 0.10 0.85 7.30 -39.42 -0.29 0.57 16 26 F -0.14 -1.40 17.27 2.25 0.04 -1.37 16 27 C -0.15 -1.27 9.66 -39.51 -0.38 -1.66 16 28 C 0.04 0.42 6.14 -2.75 -0.02 0.40 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.09 1.08 6.05 -51.93 -0.31 0.76 16 36 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 37 H 0.08 1.27 8.10 -51.93 -0.42 0.84 16 38 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 39 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 40 H 0.05 0.48 8.00 -51.93 -0.42 0.07 16 41 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.08 0.58 6.86 -51.93 -0.36 0.22 16 43 H 0.14 1.00 7.71 -52.48 -0.40 0.60 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.13 0.95 7.97 -52.49 -0.42 0.54 16 47 H 0.05 0.53 7.57 -51.93 -0.39 0.14 16 48 H 0.08 0.81 7.35 -51.93 -0.38 0.43 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -33.25 391.82 -10.36 -43.60 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.53 Total: -2.30 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.80 Total: -3.22 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -1.03 Total: -45.97 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.25 -10.36 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361994685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.762 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds