Wall clock time and date at job start Tue Mar 31 2020 18:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 120.00089 * 2 1 4 4 C 1.50698 * 109.46569 * 269.99394 * 3 2 1 5 5 H 1.07998 * 120.00273 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99726 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99659 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99919 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46826 * 90.00516 * 8 6 4 10 10 H 1.48498 * 109.46868 * 210.00011 * 8 6 4 11 11 H 1.48497 * 109.47081 * 330.00444 * 8 6 4 12 12 C 1.34777 * 120.00107 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00142 * 180.02562 * 12 2 1 14 14 C 1.50707 * 119.99877 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.46900 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47001 * 180.02562 * 15 14 12 17 17 C 1.48534 * 111.00336 * 52.60323 * 16 15 14 18 18 C 1.54933 * 103.22918 * 159.72037 * 17 16 15 19 19 C 1.54591 * 102.92615 * 322.58639 * 18 17 16 20 20 H 1.08999 * 110.39236 * 263.00205 * 19 18 17 21 21 C 1.50697 * 110.31007 * 140.86793 * 19 18 17 22 22 C 1.38267 * 119.99229 * 304.01865 * 21 19 18 23 23 C 1.38223 * 120.05318 * 179.72406 * 22 21 19 24 24 C 1.38219 * 120.02153 * 0.54338 * 23 22 21 25 25 C 1.38433 * 119.97835 * 359.72620 * 24 23 22 26 26 F 1.35095 * 120.02854 * 180.02562 * 25 24 23 27 27 C 1.38179 * 119.98242 * 124.28697 * 21 19 18 28 28 C 1.47906 * 111.00463 * 170.00034 * 16 15 14 29 29 H 1.08995 * 109.47471 * 270.00562 * 1 2 3 30 30 H 1.08998 * 109.46830 * 30.00934 * 1 2 3 31 31 H 1.09004 * 109.46930 * 150.00202 * 1 2 3 32 32 H 1.08994 * 109.46965 * 29.99468 * 3 2 1 33 33 H 1.08998 * 109.47142 * 149.99624 * 3 2 1 34 34 H 0.97003 * 119.99352 * 179.97438 * 7 6 4 35 35 H 1.09006 * 109.46686 * 60.00042 * 14 12 2 36 36 H 1.09001 * 109.47159 * 300.00017 * 14 12 2 37 37 H 1.08996 * 109.47450 * 60.00569 * 15 14 12 38 38 H 1.09001 * 109.47299 * 300.00018 * 15 14 12 39 39 H 1.09004 * 110.66939 * 278.16097 * 17 16 15 40 40 H 1.09002 * 110.66619 * 41.28493 * 17 16 15 41 41 H 1.09008 * 110.72472 * 204.22643 * 18 17 16 42 42 H 1.09006 * 110.87315 * 81.02185 * 18 17 16 43 43 H 1.08003 * 119.97055 * 359.97438 * 22 21 19 44 44 H 1.07998 * 119.98924 * 180.27295 * 23 22 21 45 45 H 1.08006 * 120.01083 * 179.74979 * 24 23 22 46 46 H 1.07999 * 120.01393 * 0.02562 * 27 21 19 47 47 H 1.09003 * 109.91125 * 333.50977 * 28 16 15 48 48 H 1.08999 * 109.91852 * 94.80110 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1262 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6733 8 14 3.4382 3.4165 -3.4341 9 1 2.3081 4.2588 -3.9016 10 1 4.6982 4.2000 -3.4961 11 1 3.5564 2.2191 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6451 -4.9074 -0.0001 17 6 0.6500 -4.9471 -1.1021 18 6 0.3784 -6.4620 -1.2802 19 6 1.7714 -7.0922 -1.0519 20 1 2.2646 -7.2794 -2.0057 21 6 1.6439 -8.3738 -0.2694 22 6 1.0117 -8.3728 0.9603 23 6 0.8890 -9.5486 1.6765 24 6 1.4081 -10.7248 1.1690 25 6 2.0461 -10.7260 -0.0595 26 9 2.5534 -11.8752 -0.5567 27 6 2.1636 -9.5484 -0.7787 28 6 2.5578 -6.0463 -0.2399 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 4.0302 4.4439 -0.8506 35 1 0.7590 -2.5302 -0.8898 36 1 0.7583 -2.5299 0.8903 37 1 3.0062 -3.5775 0.8905 38 1 3.0063 -3.5774 -0.8895 39 1 -0.2623 -4.4237 -0.8157 40 1 1.0687 -4.5214 -2.0140 41 1 0.0197 -6.6737 -2.2875 42 1 -0.3333 -6.8191 -0.5358 43 1 0.6100 -7.4532 1.3597 44 1 0.3911 -9.5475 2.6348 45 1 1.3156 -11.6427 1.7306 46 1 2.6615 -9.5481 -1.7371 47 1 3.4268 -5.7126 -0.8069 48 1 2.8739 -6.4754 0.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361994685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:40 Heat of formation + Delta-G solvation = -74.612869 kcal Electronic energy + Delta-G solvation = -27844.980182 eV Core-core repulsion = 23813.089692 eV Total energy + Delta-G solvation = -4031.890490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.89033 -41.08656 -40.52257 -39.02357 -36.61333 -35.02120 -34.64759 -32.25926 -31.39428 -30.68752 -29.62222 -28.65306 -27.26427 -25.59109 -23.98596 -23.77292 -23.58205 -21.64069 -21.08863 -19.81129 -18.70716 -18.30388 -17.98784 -17.45332 -17.09804 -17.02116 -16.85441 -16.58539 -16.37683 -16.19505 -15.90823 -15.31600 -15.04205 -14.61154 -14.42864 -14.24636 -14.10417 -13.91631 -13.71963 -13.48537 -13.44992 -13.33220 -13.15342 -13.03323 -12.80698 -12.58209 -12.55205 -12.41077 -12.27367 -12.22161 -12.17723 -11.96307 -11.75563 -11.69394 -11.49259 -10.65196 -10.59572 -9.88466 -9.58128 -9.43415 -9.39188 -8.23273 -6.38310 0.21098 0.28239 1.35241 1.38416 1.48549 1.85315 2.29290 2.42778 2.63053 3.04770 3.06682 3.23062 3.57444 3.69984 3.74907 3.87428 3.98752 4.08614 4.12598 4.18476 4.30305 4.34110 4.39733 4.42230 4.44191 4.58517 4.64642 4.71713 4.75369 4.88197 4.93062 4.96389 4.98242 5.00116 5.04154 5.09592 5.12817 5.17067 5.20232 5.23651 5.26917 5.43485 5.55735 5.60381 5.84294 5.92327 5.96552 6.00162 6.05473 6.69139 6.80329 7.27532 7.49453 8.83672 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025857 B = 0.001875 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.608942 B =14929.499373 C =15302.082522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.117 4.117 15 C 0.072 3.928 16 N -0.511 5.511 17 C 0.023 3.977 18 C -0.107 4.107 19 C -0.057 4.057 20 H 0.090 0.910 21 C -0.045 4.045 22 C -0.120 4.120 23 C -0.088 4.088 24 C -0.162 4.162 25 C 0.074 3.926 26 F -0.153 7.153 27 C -0.160 4.160 28 C 0.042 3.958 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.023 0.977 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.143 0.857 44 H 0.157 0.843 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.039 0.961 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 -27.912 1.816 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.156 4.156 15 C -0.057 4.057 16 N -0.235 5.235 17 C -0.104 4.104 18 C -0.145 4.145 19 C -0.076 4.076 20 H 0.108 0.892 21 C -0.046 4.046 22 C -0.138 4.138 23 C -0.106 4.106 24 C -0.181 4.181 25 C 0.055 3.945 26 F -0.132 7.132 27 C -0.179 4.179 28 C -0.086 4.086 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.041 0.959 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.121 0.879 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.161 0.839 44 H 0.175 0.825 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.058 0.942 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.829 -27.803 2.361 30.307 hybrid contribution 1.439 0.666 -1.594 2.249 sum -10.390 -27.136 0.766 29.067 Atomic orbital electron populations 1.21946 0.77690 1.04057 1.02666 1.48209 1.08536 1.06368 1.71165 1.18752 0.91095 0.80582 0.96002 1.21697 1.36824 1.06495 0.93028 0.92857 1.25900 0.94956 0.96494 1.02071 1.70057 1.38931 1.14778 1.33047 0.85395 0.78107 0.78192 0.78986 1.18667 1.20688 1.19801 1.21420 0.87802 0.86800 0.75794 1.90635 1.16863 1.88288 1.52699 1.21618 0.98829 0.88796 1.06389 1.21818 0.94745 0.88440 1.00716 1.64887 1.13637 1.01262 1.43683 1.23449 0.96904 0.97582 0.92461 1.22620 0.95247 0.93219 1.03386 1.21029 0.97669 0.91084 0.97830 0.89164 1.19640 0.96414 0.93453 0.95055 1.21367 0.98960 0.99379 0.94080 1.21332 0.97669 0.90969 1.00620 1.21407 1.00625 1.01176 0.94899 1.17955 0.99693 0.81869 0.94955 1.91466 1.85525 1.48421 1.87769 1.21191 1.03578 0.91445 1.01708 1.22984 0.94503 0.91068 1.00020 0.91070 0.91711 0.88514 0.95869 0.98592 0.92408 0.86956 0.85933 0.91609 0.95989 0.87931 0.94018 0.89429 0.89404 0.83899 0.82534 0.83489 0.84395 0.94224 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 10.24 127.77 1.31 3.54 16 2 N -0.61 -25.75 2.86 -851.13 -2.43 -28.19 16 3 C 0.26 14.04 5.16 85.63 0.44 14.48 16 4 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.00 0.27 5.46 84.66 0.46 0.73 16 7 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 8 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 9 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.49 20.23 7.67 87.66 0.67 20.90 16 13 O -0.60 -31.48 15.56 -3.02 -0.05 -31.52 16 14 C -0.12 -3.06 3.91 29.85 0.12 -2.94 16 15 C 0.07 1.93 4.32 86.30 0.37 2.30 16 16 N -0.51 -10.07 5.40 -883.02 -4.76 -14.83 16 17 C 0.02 0.36 5.10 86.65 0.44 0.80 16 18 C -0.11 -1.29 6.49 31.80 0.21 -1.08 16 19 C -0.06 -0.81 3.22 -10.66 -0.03 -0.84 16 20 H 0.09 1.20 7.92 -2.39 -0.02 1.18 16 21 C -0.05 -0.65 4.72 -19.87 -0.09 -0.75 16 22 C -0.12 -1.55 8.16 22.27 0.18 -1.37 16 23 C -0.09 -1.00 10.04 22.26 0.22 -0.77 16 24 C -0.16 -2.18 10.03 22.31 0.22 -1.96 16 25 C 0.07 1.26 7.30 22.38 0.16 1.42 16 26 F -0.15 -2.98 17.27 44.97 0.78 -2.20 16 27 C -0.16 -2.53 9.66 22.31 0.22 -2.31 16 28 C 0.04 0.78 6.14 86.45 0.53 1.31 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.96 8.07 -2.39 -0.02 1.95 16 31 H 0.10 1.98 6.44 -2.39 -0.02 1.96 16 32 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.00 -0.26 7.42 -2.39 -0.02 -0.27 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.11 2.40 6.05 -2.38 -0.01 2.39 16 36 H 0.12 2.58 8.11 -2.39 -0.02 2.56 16 37 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.02 0.69 7.77 -2.39 -0.02 0.67 16 39 H 0.10 1.28 7.66 -2.38 -0.02 1.26 16 40 H 0.04 0.72 8.00 -2.39 -0.02 0.70 16 41 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.09 0.96 6.86 -2.38 -0.02 0.95 16 43 H 0.14 1.70 7.71 -2.91 -0.02 1.67 16 44 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.14 1.91 7.97 -2.91 -0.02 1.88 16 47 H 0.04 0.83 7.57 -2.39 -0.02 0.81 16 48 H 0.08 1.53 7.35 -2.39 -0.02 1.51 16 Total: -1.00 -75.97 391.82 2.46 -73.51 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.94 Total: 10.22 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.67 Total: 2.25 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -6.91 Total: -99.33 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.05 Total: -31.52 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.97 2.46 -73.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361994685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.105 kcal (2) G-P(sol) polarization free energy of solvation -75.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds