Wall clock time and date at job start Tue Mar 31 2020 18:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 120.00066 * 2 1 4 4 C 1.50706 * 109.47128 * 90.00240 * 3 2 1 5 5 H 1.08000 * 119.99302 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72498 * 4 3 2 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.34771 * 119.99478 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00631 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47430 * 179.97438 * 14 12 2 16 16 N 1.46895 * 109.47086 * 179.97438 * 15 14 12 17 17 C 1.47844 * 111.00396 * 290.84513 * 16 15 14 18 18 C 1.54912 * 104.79768 * 213.63698 * 17 16 15 19 19 C 1.55138 * 101.65163 * 37.06620 * 18 17 16 20 20 H 1.09006 * 110.85347 * 82.80393 * 19 18 17 21 21 C 1.50696 * 110.70632 * 205.96298 * 19 18 17 22 22 C 1.38268 * 119.98567 * 53.32849 * 21 19 18 23 23 C 1.38223 * 120.05140 * 179.72706 * 22 21 19 24 24 C 1.38218 * 120.02260 * 0.54652 * 23 22 21 25 25 C 1.38437 * 119.97764 * 359.72704 * 24 23 22 26 26 F 1.35095 * 120.02509 * 180.02562 * 25 24 23 27 27 C 1.38176 * 119.98957 * 233.60110 * 21 19 18 28 28 C 1.47448 * 111.00138 * 170.00002 * 16 15 14 29 29 H 1.09004 * 109.47155 * 89.99624 * 1 2 3 30 30 H 1.08993 * 109.47381 * 209.99784 * 1 2 3 31 31 H 1.09002 * 109.46817 * 330.00021 * 1 2 3 32 32 H 1.09001 * 109.47786 * 330.00513 * 3 2 1 33 33 H 1.08998 * 109.47558 * 210.00376 * 3 2 1 34 34 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46570 * 299.99751 * 14 12 2 36 36 H 1.08998 * 109.47108 * 59.99583 * 14 12 2 37 37 H 1.08998 * 109.47190 * 299.99924 * 15 14 12 38 38 H 1.09003 * 109.46571 * 60.00034 * 15 14 12 39 39 H 1.09006 * 110.37170 * 332.46460 * 17 16 15 40 40 H 1.08998 * 110.37626 * 94.80318 * 17 16 15 41 41 H 1.08998 * 110.98960 * 278.97459 * 18 17 16 42 42 H 1.09003 * 110.98786 * 155.16076 * 18 17 16 43 43 H 1.08002 * 119.97241 * 359.97438 * 22 21 19 44 44 H 1.08005 * 119.98591 * 180.27549 * 23 22 21 45 45 H 1.08006 * 120.01113 * 179.74945 * 24 23 22 46 46 H 1.08001 * 120.01166 * 359.97438 * 27 21 19 47 47 H 1.08999 * 109.88743 * 242.66921 * 28 16 15 48 48 H 1.08997 * 109.88598 * 3.85305 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4209 5 1 2.0975 1.0960 2.2417 6 6 3.1315 2.8747 1.6729 7 7 3.5640 3.6118 0.6733 8 14 3.4435 3.4135 3.4341 9 1 4.2407 2.3754 4.1355 10 1 4.1923 4.6959 3.4341 11 1 2.1460 3.5973 4.1326 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 7 1.6450 -4.9074 -0.0032 17 6 0.9552 -5.1215 1.2867 18 6 0.9976 -6.6541 1.5085 19 6 2.3981 -7.0134 0.9461 20 1 3.1729 -6.8369 1.6923 21 6 2.4317 -8.4442 0.4742 22 6 1.4839 -8.8979 -0.4245 23 6 1.5169 -10.2084 -0.8626 24 6 2.4908 -11.0700 -0.3939 25 6 3.4369 -10.6184 0.5102 26 9 4.3895 -11.4595 0.9686 27 6 3.4063 -9.3037 0.9441 28 6 2.5547 -6.0427 -0.2433 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0284 -0.5137 33 1 3.1499 1.1384 -0.5139 34 1 4.0446 4.4355 0.8506 35 1 0.7584 -2.5306 0.8881 36 1 0.7590 -2.5294 -0.8919 37 1 3.0062 -3.5768 -0.8926 38 1 3.0062 -3.5783 0.8874 39 1 1.4835 -4.6071 2.0895 40 1 -0.0766 -4.7750 1.2274 41 1 0.2101 -7.1523 0.9431 42 1 0.9284 -6.8972 2.5688 43 1 0.7197 -8.2266 -0.7875 44 1 0.7787 -10.5605 -1.5681 45 1 2.5139 -12.0951 -0.7333 46 1 4.1441 -8.9501 1.6491 47 1 2.2827 -6.5461 -1.1710 48 1 3.5837 -5.6879 -0.2993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361994686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:46 Heat of formation + Delta-G solvation = -55.356364 kcal Electronic energy + Delta-G solvation = -27748.140878 eV Core-core repulsion = 23717.085412 eV Total energy + Delta-G solvation = -4031.055466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.22861 -40.29710 -39.09693 -38.23184 -34.84863 -33.97706 -32.61737 -31.50372 -30.78133 -29.64516 -28.31459 -27.47408 -25.74972 -24.08164 -23.28662 -23.03473 -22.23314 -20.73993 -20.48619 -18.31743 -17.72735 -16.88766 -16.57385 -16.52458 -16.45682 -15.93166 -15.73975 -15.33070 -15.24137 -15.02423 -14.37063 -14.16946 -14.07804 -13.82477 -13.47394 -13.25059 -12.95700 -12.87497 -12.68449 -12.36528 -12.18170 -12.10816 -11.98414 -11.84195 -11.65249 -11.54752 -11.36861 -11.18849 -11.07157 -11.00638 -10.90435 -10.72478 -10.53538 -10.15790 -9.64000 -9.34483 -9.00352 -8.87914 -8.43389 -8.43172 -7.62435 -6.03975 -4.08867 0.76182 0.81497 3.16314 3.31120 3.35675 3.37394 3.47730 3.66061 3.82850 4.13371 4.19819 4.33175 4.43988 4.49038 4.56457 4.67584 4.77780 4.86644 4.96557 5.11861 5.15152 5.21252 5.23109 5.28866 5.37191 5.43972 5.45150 5.60552 5.63386 5.68860 5.71188 5.73406 5.77578 5.84164 5.88268 5.93516 5.95105 6.10028 6.11730 6.17500 6.23255 6.50599 6.84059 6.95686 7.07499 7.45538 7.55574 7.92353 8.24048 8.44238 8.90450 9.11598 9.56080 11.04011 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.001884 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.926744 B =14855.094916 C =15386.705475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.132 4.132 15 C 0.067 3.933 16 N -0.530 5.530 17 C 0.037 3.963 18 C -0.119 4.119 19 C -0.075 4.075 20 H 0.087 0.913 21 C -0.037 4.037 22 C -0.123 4.123 23 C -0.088 4.088 24 C -0.161 4.161 25 C 0.099 3.901 26 F -0.141 7.141 27 C -0.152 4.152 28 C 0.052 3.948 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.082 0.918 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -27.630 -2.011 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.173 4.173 15 C -0.061 4.061 16 N -0.254 5.254 17 C -0.090 4.090 18 C -0.157 4.157 19 C -0.095 4.095 20 H 0.105 0.895 21 C -0.038 4.038 22 C -0.141 4.141 23 C -0.106 4.106 24 C -0.179 4.179 25 C 0.079 3.921 26 F -0.120 7.120 27 C -0.171 4.171 28 C -0.076 4.076 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.100 0.900 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.030 -27.402 -2.450 28.660 hybrid contribution 0.930 0.245 1.755 2.001 sum -7.101 -27.157 -0.695 28.079 Atomic orbital electron populations 1.21630 0.81439 1.02498 1.00420 1.48158 1.06191 1.07889 1.71316 1.19276 0.92574 0.78190 0.97431 1.21392 1.36408 1.06397 0.92293 0.92605 1.24945 0.95378 0.96434 0.97430 1.69925 1.38094 1.14588 1.30763 0.86557 0.78332 0.77825 0.84685 1.20231 1.21157 1.20251 1.20329 0.88077 0.85216 0.77403 1.90664 1.14027 1.87394 1.50392 1.21592 0.99204 0.92586 1.03925 1.22044 0.94544 0.87141 1.02419 1.63596 1.28094 1.01954 1.31719 1.23137 1.00197 0.95189 0.90486 1.22843 0.95693 0.95835 1.01356 1.21466 0.99070 0.90628 0.98298 0.89482 1.19551 0.93888 0.94776 0.95579 1.21153 0.99265 0.95962 0.97699 1.21024 0.97552 0.93197 0.98854 1.21157 0.96177 1.01395 0.99216 1.17697 0.88750 0.88248 0.97366 1.91503 1.62259 1.70650 1.87591 1.21084 1.01014 0.92076 1.02895 1.22922 0.96331 0.90805 0.97559 0.93734 0.92423 0.90893 0.95057 0.93859 0.92667 0.89753 0.88904 0.89998 0.93663 0.93063 0.89820 0.90135 0.90594 0.84820 0.84918 0.84905 0.84810 0.90001 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.84 2.86 -182.95 -0.52 -13.36 16 3 C 0.24 6.47 5.16 -5.19 -0.03 6.44 16 4 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.50 10.39 7.67 -10.99 -0.08 10.30 16 13 O -0.55 -13.71 15.56 5.55 0.09 -13.63 16 14 C -0.13 -1.92 4.30 -27.88 -0.12 -2.04 16 15 C 0.07 0.92 3.85 -3.83 -0.01 0.91 16 16 N -0.53 -5.78 5.16 -231.25 -1.19 -6.97 16 17 C 0.04 0.35 5.78 -2.30 -0.01 0.34 16 18 C -0.12 -0.90 6.45 -24.59 -0.16 -1.06 16 19 C -0.08 -0.61 3.16 -89.95 -0.28 -0.90 16 20 H 0.09 0.72 7.95 -51.93 -0.41 0.30 16 21 C -0.04 -0.30 4.92 -104.64 -0.51 -0.81 16 22 C -0.12 -0.86 8.16 -39.58 -0.32 -1.19 16 23 C -0.09 -0.56 10.04 -39.59 -0.40 -0.96 16 24 C -0.16 -1.17 10.03 -39.52 -0.40 -1.57 16 25 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 26 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 27 C -0.15 -1.28 9.66 -39.52 -0.38 -1.67 16 28 C 0.05 0.50 6.38 -2.83 -0.02 0.48 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.10 6.75 -51.93 -0.35 0.74 16 36 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.08 1.22 7.99 -51.93 -0.41 0.80 16 38 H 0.05 0.69 7.80 -51.93 -0.41 0.29 16 39 H 0.05 0.53 7.62 -51.93 -0.40 0.13 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.56 6.74 -51.93 -0.35 0.21 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.13 0.82 7.27 -52.49 -0.38 0.44 16 44 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 45 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.13 1.01 7.98 -52.49 -0.42 0.59 16 47 H 0.08 0.75 7.12 -51.93 -0.37 0.38 16 48 H 0.06 0.63 7.55 -51.93 -0.39 0.24 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -33.41 392.49 -10.32 -43.73 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.53 Total: -2.30 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.83 Total: -2.92 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.98 Total: -46.36 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.41 -10.32 -43.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361994686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.628 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds