Wall clock time and date at job start Tue Mar 31 2020 18:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 120.00066 * 2 1 4 4 C 1.50706 * 109.47128 * 90.00240 * 3 2 1 5 5 H 1.08000 * 119.99302 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72498 * 4 3 2 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.34771 * 119.99478 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00631 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47430 * 179.97438 * 14 12 2 16 16 N 1.46895 * 109.47086 * 179.97438 * 15 14 12 17 17 C 1.47844 * 111.00396 * 290.84513 * 16 15 14 18 18 C 1.54912 * 104.79768 * 213.63698 * 17 16 15 19 19 C 1.55138 * 101.65163 * 37.06620 * 18 17 16 20 20 H 1.09006 * 110.85347 * 82.80393 * 19 18 17 21 21 C 1.50696 * 110.70632 * 205.96298 * 19 18 17 22 22 C 1.38268 * 119.98567 * 53.32849 * 21 19 18 23 23 C 1.38223 * 120.05140 * 179.72706 * 22 21 19 24 24 C 1.38218 * 120.02260 * 0.54652 * 23 22 21 25 25 C 1.38437 * 119.97764 * 359.72704 * 24 23 22 26 26 F 1.35095 * 120.02509 * 180.02562 * 25 24 23 27 27 C 1.38176 * 119.98957 * 233.60110 * 21 19 18 28 28 C 1.47448 * 111.00138 * 170.00002 * 16 15 14 29 29 H 1.09004 * 109.47155 * 89.99624 * 1 2 3 30 30 H 1.08993 * 109.47381 * 209.99784 * 1 2 3 31 31 H 1.09002 * 109.46817 * 330.00021 * 1 2 3 32 32 H 1.09001 * 109.47786 * 330.00513 * 3 2 1 33 33 H 1.08998 * 109.47558 * 210.00376 * 3 2 1 34 34 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46570 * 299.99751 * 14 12 2 36 36 H 1.08998 * 109.47108 * 59.99583 * 14 12 2 37 37 H 1.08998 * 109.47190 * 299.99924 * 15 14 12 38 38 H 1.09003 * 109.46571 * 60.00034 * 15 14 12 39 39 H 1.09006 * 110.37170 * 332.46460 * 17 16 15 40 40 H 1.08998 * 110.37626 * 94.80318 * 17 16 15 41 41 H 1.08998 * 110.98960 * 278.97459 * 18 17 16 42 42 H 1.09003 * 110.98786 * 155.16076 * 18 17 16 43 43 H 1.08002 * 119.97241 * 359.97438 * 22 21 19 44 44 H 1.08005 * 119.98591 * 180.27549 * 23 22 21 45 45 H 1.08006 * 120.01113 * 179.74945 * 24 23 22 46 46 H 1.08001 * 120.01166 * 359.97438 * 27 21 19 47 47 H 1.08999 * 109.88743 * 242.66921 * 28 16 15 48 48 H 1.08997 * 109.88598 * 3.85305 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4209 5 1 2.0975 1.0960 2.2417 6 6 3.1315 2.8747 1.6729 7 7 3.5640 3.6118 0.6733 8 14 3.4435 3.4135 3.4341 9 1 4.2407 2.3754 4.1355 10 1 4.1923 4.6959 3.4341 11 1 2.1460 3.5973 4.1326 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 7 1.6450 -4.9074 -0.0032 17 6 0.9552 -5.1215 1.2867 18 6 0.9976 -6.6541 1.5085 19 6 2.3981 -7.0134 0.9461 20 1 3.1729 -6.8369 1.6923 21 6 2.4317 -8.4442 0.4742 22 6 1.4839 -8.8979 -0.4245 23 6 1.5169 -10.2084 -0.8626 24 6 2.4908 -11.0700 -0.3939 25 6 3.4369 -10.6184 0.5102 26 9 4.3895 -11.4595 0.9686 27 6 3.4063 -9.3037 0.9441 28 6 2.5547 -6.0427 -0.2433 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0284 -0.5137 33 1 3.1499 1.1384 -0.5139 34 1 4.0446 4.4355 0.8506 35 1 0.7584 -2.5306 0.8881 36 1 0.7590 -2.5294 -0.8919 37 1 3.0062 -3.5768 -0.8926 38 1 3.0062 -3.5783 0.8874 39 1 1.4835 -4.6071 2.0895 40 1 -0.0766 -4.7750 1.2274 41 1 0.2101 -7.1523 0.9431 42 1 0.9284 -6.8972 2.5688 43 1 0.7197 -8.2266 -0.7875 44 1 0.7787 -10.5605 -1.5681 45 1 2.5139 -12.0951 -0.7333 46 1 4.1441 -8.9501 1.6491 47 1 2.2827 -6.5461 -1.1710 48 1 3.5837 -5.6879 -0.2993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361994686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:45 Heat of formation + Delta-G solvation = -75.566965 kcal Electronic energy + Delta-G solvation = -27749.017275 eV Core-core repulsion = 23717.085412 eV Total energy + Delta-G solvation = -4031.931863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.91369 -41.06733 -40.52504 -39.06703 -36.60870 -34.97201 -34.63106 -32.33151 -31.45876 -30.63835 -29.60713 -28.69994 -27.26446 -25.58293 -24.03959 -23.75425 -23.53911 -21.64192 -21.18075 -19.88687 -18.70219 -18.34882 -17.94389 -17.51503 -17.10408 -17.06644 -16.72578 -16.61191 -16.40570 -16.24421 -15.87391 -15.31020 -14.88822 -14.55699 -14.47123 -14.22390 -14.13696 -13.90079 -13.77321 -13.59449 -13.45140 -13.37734 -13.17331 -13.08223 -12.80070 -12.68669 -12.61180 -12.46077 -12.30489 -12.19823 -12.09611 -11.90579 -11.77793 -11.71643 -11.53713 -10.65125 -10.59546 -9.91869 -9.59517 -9.41075 -9.32436 -8.22936 -6.38155 0.18414 0.25689 1.35404 1.39877 1.47199 1.85829 2.29191 2.42729 2.60342 3.02005 3.06340 3.22075 3.56120 3.72343 3.73333 3.88833 3.96752 4.07048 4.10200 4.19278 4.24425 4.28756 4.39466 4.42218 4.44328 4.57027 4.65159 4.68909 4.75216 4.90262 4.92129 4.95334 4.97940 5.01437 5.04375 5.07021 5.13204 5.14168 5.18431 5.23695 5.24184 5.40812 5.55779 5.58719 5.84631 5.94760 5.98505 6.02328 6.05666 6.69077 6.80611 7.27638 7.49764 8.83819 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.001884 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.926744 B =14855.094916 C =15386.705475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.258 1.258 12 C 0.493 3.507 13 O -0.604 6.604 14 C -0.112 4.112 15 C 0.075 3.925 16 N -0.523 5.523 17 C 0.032 3.968 18 C -0.110 4.110 19 C -0.070 4.070 20 H 0.080 0.920 21 C -0.043 4.043 22 C -0.122 4.122 23 C -0.084 4.084 24 C -0.162 4.162 25 C 0.075 3.925 26 F -0.154 7.154 27 C -0.164 4.164 28 C 0.050 3.950 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.023 0.977 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.021 0.979 39 H 0.039 0.961 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.148 0.852 44 H 0.161 0.839 45 H 0.149 0.851 46 H 0.133 0.867 47 H 0.091 0.909 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -29.222 -1.430 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.204 1.204 10 H -0.203 1.203 11 H -0.183 1.183 12 C 0.282 3.718 13 O -0.486 6.486 14 C -0.152 4.152 15 C -0.054 4.054 16 N -0.247 5.247 17 C -0.095 4.095 18 C -0.148 4.148 19 C -0.089 4.089 20 H 0.098 0.902 21 C -0.044 4.044 22 C -0.139 4.139 23 C -0.102 4.102 24 C -0.181 4.181 25 C 0.056 3.944 26 F -0.132 7.132 27 C -0.183 4.183 28 C -0.078 4.078 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.166 0.834 44 H 0.179 0.821 45 H 0.166 0.834 46 H 0.150 0.850 47 H 0.109 0.891 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.958 -29.017 -1.872 31.074 hybrid contribution 1.815 0.705 1.502 2.459 sum -9.143 -28.312 -0.370 29.754 Atomic orbital electron populations 1.21943 0.77697 1.04035 1.02648 1.48208 1.08533 1.06373 1.71158 1.18748 0.91081 0.80584 0.96005 1.21674 1.36736 1.06681 0.93029 0.92841 1.25900 0.94930 0.96491 1.02093 1.70050 1.38624 1.15030 1.33119 0.85456 0.78889 0.77325 0.79068 1.20406 1.20343 1.18279 1.21448 0.87800 0.86830 0.75748 1.90633 1.16865 1.88318 1.52765 1.21503 0.98770 0.88599 1.06302 1.21844 0.94261 0.88737 1.00545 1.63640 1.27527 1.00824 1.32714 1.23261 1.00499 0.96521 0.89214 1.22827 0.95368 0.94449 1.02182 1.21373 0.99554 0.90528 0.97475 0.90187 1.19533 0.94269 0.94366 0.96219 1.21372 0.99029 0.96544 0.96998 1.21360 0.97504 0.92688 0.98665 1.21432 0.95716 1.02448 0.98470 1.17972 0.89422 0.88426 0.98581 1.91467 1.62878 1.70978 1.87918 1.21175 1.01449 0.92327 1.03322 1.22958 0.95378 0.90757 0.98694 0.91095 0.88547 0.91709 0.95874 0.98611 0.92402 0.87181 0.86094 0.91758 0.96047 0.94227 0.88188 0.88754 0.89641 0.83386 0.82098 0.83356 0.84951 0.89070 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.24 127.77 1.31 3.59 16 2 N -0.61 -26.03 2.86 -851.13 -2.43 -28.46 16 3 C 0.26 14.13 5.16 85.64 0.44 14.57 16 4 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.00 0.28 5.46 84.65 0.46 0.74 16 7 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 8 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 C 0.49 20.46 7.67 87.66 0.67 21.13 16 13 O -0.60 -31.73 15.56 -3.04 -0.05 -31.78 16 14 C -0.11 -3.02 4.30 29.85 0.13 -2.89 16 15 C 0.07 2.05 3.85 86.30 0.33 2.38 16 16 N -0.52 -10.47 5.16 -885.54 -4.57 -15.04 16 17 C 0.03 0.52 5.78 86.78 0.50 1.02 16 18 C -0.11 -1.38 6.45 31.98 0.21 -1.17 16 19 C -0.07 -1.05 3.16 -10.36 -0.03 -1.08 16 20 H 0.08 1.31 7.95 -2.38 -0.02 1.29 16 21 C -0.04 -0.63 4.92 -19.87 -0.10 -0.72 16 22 C -0.12 -1.38 8.16 22.27 0.18 -1.20 16 23 C -0.08 -0.83 10.04 22.26 0.22 -0.61 16 24 C -0.16 -2.08 10.03 22.31 0.22 -1.85 16 25 C 0.07 1.29 7.30 22.37 0.16 1.46 16 26 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 27 C -0.16 -2.72 9.66 22.31 0.22 -2.51 16 28 C 0.05 0.91 6.38 86.64 0.55 1.46 16 29 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.10 2.05 6.44 -2.39 -0.02 2.03 16 31 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 32 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 33 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 34 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.11 2.46 6.75 -2.38 -0.02 2.44 16 36 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16 37 H 0.06 1.96 7.99 -2.39 -0.02 1.95 16 38 H 0.02 0.68 7.80 -2.39 -0.02 0.66 16 39 H 0.04 0.75 7.62 -2.38 -0.02 0.73 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 0.95 6.74 -2.39 -0.02 0.93 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.15 1.26 7.27 -2.91 -0.02 1.24 16 44 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 45 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 46 H 0.13 2.09 7.98 -2.91 -0.02 2.07 16 47 H 0.09 1.50 7.12 -2.39 -0.02 1.49 16 48 H 0.05 0.97 7.55 -2.39 -0.02 0.95 16 Total: -1.00 -76.50 392.49 2.71 -73.79 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.94 Total: 10.22 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.72 Total: 2.91 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -6.72 Total: -100.06 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -76.50 2.71 -73.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361994686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.776 kcal (2) G-P(sol) polarization free energy of solvation -76.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds