Wall clock time and date at job start Tue Mar 31 2020 18:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00150 * 2 1 4 4 C 1.50707 * 109.47105 * 269.99854 * 3 2 1 5 5 H 1.08006 * 119.99754 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00234 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99835 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00051 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46957 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47055 * 120.00129 * 8 6 4 11 11 H 1.48502 * 109.46917 * 239.99789 * 8 6 4 12 12 C 1.34779 * 119.99887 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99852 * 186.44112 * 12 2 1 14 14 C 1.50699 * 120.00119 * 6.43801 * 12 2 1 15 15 H 1.09000 * 109.50202 * 307.06426 * 14 12 2 16 16 C 1.53121 * 109.50137 * 67.13842 * 14 12 2 17 17 C 1.53122 * 109.15716 * 177.55997 * 16 14 12 18 18 C 1.53037 * 109.30596 * 302.40197 * 17 16 14 19 19 N 1.46847 * 109.52553 * 59.16499 * 18 17 16 20 20 C 1.46890 * 111.00007 * 174.16070 * 19 18 17 21 21 C 1.50703 * 109.47178 * 293.94742 * 20 19 18 22 22 C 1.38272 * 119.98457 * 90.00117 * 21 20 19 23 23 C 1.38220 * 120.04839 * 180.02562 * 22 21 20 24 24 C 1.38214 * 120.02710 * 0.02562 * 23 22 21 25 25 C 1.38438 * 119.97753 * 0.02562 * 24 23 22 26 26 F 1.35098 * 120.02515 * 180.02562 * 25 24 23 27 27 C 1.38170 * 119.98829 * 269.72957 * 21 20 19 28 28 C 1.46850 * 111.19255 * 298.25776 * 19 18 17 29 29 H 1.08994 * 109.47495 * 264.47671 * 1 2 3 30 30 H 1.09001 * 109.46855 * 24.47783 * 1 2 3 31 31 H 1.09000 * 109.47336 * 144.47106 * 1 2 3 32 32 H 1.09001 * 109.47099 * 29.99695 * 3 2 1 33 33 H 1.08997 * 109.47321 * 149.99993 * 3 2 1 34 34 H 0.97000 * 119.99620 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.49769 * 57.66937 * 16 14 12 36 36 H 1.09005 * 109.55814 * 297.47569 * 16 14 12 37 37 H 1.09001 * 109.50482 * 182.44441 * 17 16 14 38 38 H 1.08997 * 109.50835 * 62.36460 * 17 16 14 39 39 H 1.08998 * 109.45990 * 179.17845 * 18 17 16 40 40 H 1.08998 * 109.46639 * 299.14337 * 18 17 16 41 41 H 1.08998 * 109.47618 * 53.95129 * 20 19 18 42 42 H 1.08999 * 109.47352 * 173.95278 * 20 19 18 43 43 H 1.08004 * 119.97455 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.98459 * 180.02562 * 23 22 21 45 45 H 1.08005 * 120.01155 * 180.02562 * 24 23 22 46 46 H 1.08001 * 120.01657 * 0.02562 * 27 21 20 47 47 H 1.08998 * 109.45758 * 181.76065 * 28 19 18 48 48 H 1.09005 * 109.46140 * 301.72982 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1270 2.8773 -1.6729 7 7 3.5552 3.6170 -0.6732 8 14 3.4390 3.4161 -3.4341 9 1 2.8619 2.4156 -4.3674 10 1 2.8020 4.7371 -3.6678 11 1 4.9017 3.5238 -3.6670 12 6 2.1389 -1.1672 0.0005 13 8 3.3460 -1.1705 0.1184 14 6 1.3925 -2.4683 -0.1452 15 1 0.5981 -2.5174 0.5994 16 6 0.7844 -2.5544 -1.5479 17 6 0.0801 -3.9045 -1.7082 18 6 1.0842 -5.0319 -1.4575 19 7 1.6360 -4.9053 -0.1026 20 6 2.4990 -6.0485 0.2232 21 6 1.6668 -7.3030 0.2909 22 6 1.4754 -8.0674 -0.8453 23 6 0.7119 -9.2180 -0.7848 24 6 0.1384 -9.6055 0.4116 25 6 0.3285 -8.8404 1.5496 26 9 -0.2312 -9.2185 2.7196 27 6 1.1000 -7.6920 1.4895 28 6 2.3584 -3.6372 0.0602 29 1 -0.3634 -0.0989 1.0228 30 1 -0.3633 0.9353 -0.4258 31 1 -0.3634 -0.8363 -0.5972 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0321 4.4429 -0.8506 35 1 1.5747 -2.4650 -2.2931 36 1 0.0625 -1.7488 -1.6827 37 1 -0.3176 -3.9897 -2.7195 38 1 -0.7357 -3.9772 -0.9890 39 1 0.5820 -5.9942 -1.5567 40 1 1.8922 -4.9673 -2.1862 41 1 3.2616 -6.1595 -0.5476 42 1 2.9789 -5.8785 1.1871 43 1 1.9221 -7.7647 -1.7809 44 1 0.5633 -9.8145 -1.6729 45 1 -0.4578 -10.5048 0.4586 46 1 1.2530 -7.0969 2.3777 47 1 2.7818 -3.5867 1.0633 48 1 3.1605 -3.5791 -0.6758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371498140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:07 Heat of formation + Delta-G solvation = -51.583607 kcal Electronic energy + Delta-G solvation = -28750.914702 eV Core-core repulsion = 24720.022836 eV Total energy + Delta-G solvation = -4030.891867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.13541 -40.18631 -39.33797 -37.74869 -34.87450 -34.19793 -32.58509 -31.37053 -31.10135 -30.58445 -27.79986 -26.61890 -25.91066 -24.16070 -23.32617 -22.97869 -22.22994 -21.45998 -19.87546 -18.41016 -17.50548 -16.62265 -16.52415 -16.51197 -16.47790 -16.00449 -15.77430 -15.20493 -14.96495 -14.60383 -14.52400 -14.19417 -14.07654 -14.05605 -13.59013 -13.41396 -12.97617 -12.79841 -12.51047 -12.35644 -12.15328 -12.06507 -12.02487 -11.93968 -11.71762 -11.34600 -11.22891 -11.12498 -10.93853 -10.85987 -10.57341 -10.52812 -10.28886 -10.12274 -9.60541 -9.30010 -8.99276 -8.81309 -8.45070 -8.40645 -7.60994 -6.05470 -4.10449 0.82152 0.90642 3.18105 3.27864 3.34684 3.37554 3.43824 3.75982 3.94116 4.15974 4.35040 4.43447 4.47686 4.70359 4.74595 4.85624 4.86425 4.99587 5.01212 5.13078 5.22198 5.25693 5.30870 5.37128 5.43016 5.55896 5.57608 5.65525 5.73456 5.74523 5.76444 5.81914 5.90968 5.91854 5.97709 6.01180 6.03959 6.15268 6.19319 6.32310 6.45277 6.57942 6.92876 6.97099 7.08279 7.46025 7.55751 7.91466 8.22736 8.44007 8.89319 9.10085 9.54814 11.02539 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.002274 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.021723 B =12310.400712 C =12611.193614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.601 5.601 3 C 0.243 3.757 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.512 3.488 13 O -0.547 6.547 14 C -0.101 4.101 15 H 0.096 0.904 16 C -0.119 4.119 17 C -0.113 4.113 18 C 0.049 3.951 19 N -0.534 5.534 20 C 0.091 3.909 21 C -0.043 4.043 22 C -0.125 4.125 23 C -0.092 4.092 24 C -0.158 4.158 25 C 0.096 3.904 26 F -0.141 7.141 27 C -0.132 4.132 28 C 0.079 3.921 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.137 0.863 47 H 0.080 0.920 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 -24.882 0.288 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.332 5.332 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.298 3.702 13 O -0.425 6.425 14 C -0.123 4.123 15 H 0.114 0.886 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.079 4.079 19 N -0.258 5.258 20 C -0.036 4.036 21 C -0.043 4.043 22 C -0.144 4.144 23 C -0.110 4.110 24 C -0.177 4.177 25 C 0.077 3.923 26 F -0.120 7.120 27 C -0.151 4.151 28 C -0.049 4.049 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.155 0.845 47 H 0.099 0.901 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.816 -24.672 0.773 26.211 hybrid contribution 0.631 0.422 -1.305 1.509 sum -8.186 -24.250 -0.532 25.600 Atomic orbital electron populations 1.21901 0.81579 1.03210 1.00405 1.48086 1.06127 1.07743 1.71256 1.19305 0.92695 0.78152 0.97442 1.21472 1.36380 1.06269 0.92292 0.92463 1.24949 0.95408 0.96437 0.97401 1.69948 1.38382 1.14340 1.30638 0.86452 0.78075 0.78339 0.84608 1.19830 1.20937 1.20891 1.20210 0.87764 0.84989 0.77257 1.90649 1.14426 1.87256 1.50136 1.21264 0.98882 0.92932 0.99234 0.88634 1.21740 1.00541 0.97824 0.95528 1.21570 0.98118 0.93757 1.01596 1.22230 0.97544 0.99569 0.88559 1.61909 1.35901 1.01368 1.26620 1.21040 0.92791 0.87520 1.02295 1.19622 0.96861 0.95439 0.92395 1.21171 0.99730 0.95200 0.98302 1.20966 0.96397 0.96441 0.97183 1.21137 1.03190 1.01137 0.92222 1.17721 0.97150 0.95693 0.81712 1.91503 1.83363 1.91057 1.46079 1.21042 0.98541 0.95958 0.99599 1.21809 0.94180 0.86542 1.02373 0.93859 0.90764 0.91495 0.95071 0.93759 0.92768 0.91525 0.90061 0.91305 0.91001 0.90461 0.94773 0.93296 0.89349 0.85508 0.85079 0.84971 0.84533 0.90109 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 9.91 59.85 0.59 1.75 16 2 N -0.60 -12.73 2.86 -182.95 -0.52 -13.25 16 3 C 0.24 6.40 5.19 -5.19 -0.03 6.37 16 4 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.51 10.55 6.95 -10.98 -0.08 10.48 16 13 O -0.55 -13.62 15.52 5.56 0.09 -13.53 16 14 C -0.10 -1.52 1.87 -91.70 -0.17 -1.69 16 15 H 0.10 1.31 7.75 -51.93 -0.40 0.91 16 16 C -0.12 -1.57 4.97 -26.61 -0.13 -1.71 16 17 C -0.11 -1.17 6.09 -26.65 -0.16 -1.33 16 18 C 0.05 0.50 5.16 -3.83 -0.02 0.48 16 19 N -0.53 -6.02 4.65 -236.13 -1.10 -7.12 16 20 C 0.09 0.87 5.12 -4.98 -0.03 0.85 16 21 C -0.04 -0.38 4.89 -104.63 -0.51 -0.89 16 22 C -0.13 -0.96 7.88 -39.58 -0.31 -1.28 16 23 C -0.09 -0.63 10.04 -39.60 -0.40 -1.03 16 24 C -0.16 -1.24 10.03 -39.52 -0.40 -1.63 16 25 C 0.10 0.92 7.30 -39.42 -0.29 0.63 16 26 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 27 C -0.13 -1.24 9.68 -39.51 -0.38 -1.63 16 28 C 0.08 1.10 4.08 -3.84 -0.02 1.09 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 31 H 0.07 0.89 4.18 -51.93 -0.22 0.67 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.04 1.32 7.34 -51.93 -0.38 0.94 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.06 5.31 -51.93 -0.28 0.78 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.71 5.75 -51.93 -0.30 0.41 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.45 8.06 -51.93 -0.42 0.03 16 42 H 0.09 0.82 7.92 -51.93 -0.41 0.41 16 43 H 0.13 0.82 7.95 -52.48 -0.42 0.40 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 48 H 0.05 0.73 8.00 -51.93 -0.42 0.32 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -32.95 385.83 -10.13 -43.08 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.42 Total: -1.33 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.75 Total: -3.08 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.88 Total: -46.26 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.95 -10.13 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371498140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.505 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds