Wall clock time and date at job start Tue Mar 31 2020 18:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00150 * 2 1 4 4 C 1.50707 * 109.47105 * 269.99854 * 3 2 1 5 5 H 1.08006 * 119.99754 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00234 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99835 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00051 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46957 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47055 * 120.00129 * 8 6 4 11 11 H 1.48502 * 109.46917 * 239.99789 * 8 6 4 12 12 C 1.34779 * 119.99887 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99852 * 186.44112 * 12 2 1 14 14 C 1.50699 * 120.00119 * 6.43801 * 12 2 1 15 15 H 1.09000 * 109.50202 * 307.06426 * 14 12 2 16 16 C 1.53121 * 109.50137 * 67.13842 * 14 12 2 17 17 C 1.53122 * 109.15716 * 177.55997 * 16 14 12 18 18 C 1.53037 * 109.30596 * 302.40197 * 17 16 14 19 19 N 1.46847 * 109.52553 * 59.16499 * 18 17 16 20 20 C 1.46890 * 111.00007 * 174.16070 * 19 18 17 21 21 C 1.50703 * 109.47178 * 293.94742 * 20 19 18 22 22 C 1.38272 * 119.98457 * 90.00117 * 21 20 19 23 23 C 1.38220 * 120.04839 * 180.02562 * 22 21 20 24 24 C 1.38214 * 120.02710 * 0.02562 * 23 22 21 25 25 C 1.38438 * 119.97753 * 0.02562 * 24 23 22 26 26 F 1.35098 * 120.02515 * 180.02562 * 25 24 23 27 27 C 1.38170 * 119.98829 * 269.72957 * 21 20 19 28 28 C 1.46850 * 111.19255 * 298.25776 * 19 18 17 29 29 H 1.08994 * 109.47495 * 264.47671 * 1 2 3 30 30 H 1.09001 * 109.46855 * 24.47783 * 1 2 3 31 31 H 1.09000 * 109.47336 * 144.47106 * 1 2 3 32 32 H 1.09001 * 109.47099 * 29.99695 * 3 2 1 33 33 H 1.08997 * 109.47321 * 149.99993 * 3 2 1 34 34 H 0.97000 * 119.99620 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.49769 * 57.66937 * 16 14 12 36 36 H 1.09005 * 109.55814 * 297.47569 * 16 14 12 37 37 H 1.09001 * 109.50482 * 182.44441 * 17 16 14 38 38 H 1.08997 * 109.50835 * 62.36460 * 17 16 14 39 39 H 1.08998 * 109.45990 * 179.17845 * 18 17 16 40 40 H 1.08998 * 109.46639 * 299.14337 * 18 17 16 41 41 H 1.08998 * 109.47618 * 53.95129 * 20 19 18 42 42 H 1.08999 * 109.47352 * 173.95278 * 20 19 18 43 43 H 1.08004 * 119.97455 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.98459 * 180.02562 * 23 22 21 45 45 H 1.08005 * 120.01155 * 180.02562 * 24 23 22 46 46 H 1.08001 * 120.01657 * 0.02562 * 27 21 20 47 47 H 1.08998 * 109.45758 * 181.76065 * 28 19 18 48 48 H 1.09005 * 109.46140 * 301.72982 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1270 2.8773 -1.6729 7 7 3.5552 3.6170 -0.6732 8 14 3.4390 3.4161 -3.4341 9 1 2.8619 2.4156 -4.3674 10 1 2.8020 4.7371 -3.6678 11 1 4.9017 3.5238 -3.6670 12 6 2.1389 -1.1672 0.0005 13 8 3.3460 -1.1705 0.1184 14 6 1.3925 -2.4683 -0.1452 15 1 0.5981 -2.5174 0.5994 16 6 0.7844 -2.5544 -1.5479 17 6 0.0801 -3.9045 -1.7082 18 6 1.0842 -5.0319 -1.4575 19 7 1.6360 -4.9053 -0.1026 20 6 2.4990 -6.0485 0.2232 21 6 1.6668 -7.3030 0.2909 22 6 1.4754 -8.0674 -0.8453 23 6 0.7119 -9.2180 -0.7848 24 6 0.1384 -9.6055 0.4116 25 6 0.3285 -8.8404 1.5496 26 9 -0.2312 -9.2185 2.7196 27 6 1.1000 -7.6920 1.4895 28 6 2.3584 -3.6372 0.0602 29 1 -0.3634 -0.0989 1.0228 30 1 -0.3633 0.9353 -0.4258 31 1 -0.3634 -0.8363 -0.5972 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0321 4.4429 -0.8506 35 1 1.5747 -2.4650 -2.2931 36 1 0.0625 -1.7488 -1.6827 37 1 -0.3176 -3.9897 -2.7195 38 1 -0.7357 -3.9772 -0.9890 39 1 0.5820 -5.9942 -1.5567 40 1 1.8922 -4.9673 -2.1862 41 1 3.2616 -6.1595 -0.5476 42 1 2.9789 -5.8785 1.1871 43 1 1.9221 -7.7647 -1.7809 44 1 0.5633 -9.8145 -1.6729 45 1 -0.4578 -10.5048 0.4586 46 1 1.2530 -7.0969 2.3777 47 1 2.7818 -3.5867 1.0633 48 1 3.1605 -3.5791 -0.6758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371498140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:06 Heat of formation + Delta-G solvation = -71.379909 kcal Electronic energy + Delta-G solvation = -28751.773134 eV Core-core repulsion = 24720.022836 eV Total energy + Delta-G solvation = -4031.750299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.86170 -41.37506 -40.30995 -38.85740 -36.65462 -35.29122 -34.54182 -32.14368 -32.12172 -31.33402 -29.68583 -27.54305 -27.33742 -25.73880 -24.30757 -23.89130 -23.43954 -22.25441 -20.93032 -19.91914 -18.67653 -18.24600 -17.90522 -17.36286 -17.24825 -17.06842 -16.78873 -16.52311 -16.20030 -16.04872 -15.80121 -15.32941 -15.19027 -14.86367 -14.56761 -14.39045 -14.25296 -14.04236 -13.64237 -13.59033 -13.49672 -13.44134 -13.12344 -13.01558 -12.86362 -12.79656 -12.59815 -12.49011 -12.30880 -12.22141 -11.92512 -11.79621 -11.72449 -11.56633 -11.26749 -10.66436 -10.46992 -9.92517 -9.65122 -9.40434 -9.31389 -8.23536 -6.38831 0.18854 0.29591 1.35459 1.37709 1.49576 1.79763 2.25806 2.39322 2.60654 3.05651 3.09337 3.28619 3.60100 3.68664 3.80767 3.86021 3.93262 4.10806 4.15044 4.24300 4.28727 4.29323 4.36780 4.39639 4.52673 4.59440 4.62282 4.68772 4.75716 4.77831 4.89216 4.93819 4.96048 4.98563 5.00849 5.12332 5.14214 5.21772 5.23125 5.27018 5.39370 5.43071 5.55526 5.55670 5.84016 5.94118 6.00849 6.04701 6.09714 6.68764 6.78161 7.26597 7.46097 8.83815 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.002274 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.021723 B =12310.400712 C =12611.193614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.502 3.498 13 O -0.601 6.601 14 C -0.087 4.087 15 H 0.118 0.882 16 C -0.115 4.115 17 C -0.104 4.104 18 C 0.046 3.954 19 N -0.530 5.530 20 C 0.091 3.909 21 C -0.050 4.050 22 C -0.124 4.124 23 C -0.086 4.086 24 C -0.156 4.156 25 C 0.075 3.925 26 F -0.153 7.153 27 C -0.143 4.143 28 C 0.087 3.913 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.022 0.978 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.143 0.857 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.132 0.868 47 H 0.069 0.931 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 -26.941 -1.941 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.338 5.338 3 C 0.135 3.865 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.483 6.483 14 C -0.108 4.108 15 H 0.136 0.864 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.081 4.081 19 N -0.254 5.254 20 C -0.036 4.036 21 C -0.051 4.051 22 C -0.143 4.143 23 C -0.103 4.103 24 C -0.175 4.175 25 C 0.056 3.944 26 F -0.132 7.132 27 C -0.163 4.163 28 C -0.041 4.041 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.161 0.839 44 H 0.179 0.821 45 H 0.168 0.832 46 H 0.150 0.850 47 H 0.087 0.913 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.044 -26.756 -1.452 28.982 hybrid contribution 1.322 1.021 -0.561 1.762 sum -9.722 -25.735 -2.013 27.584 Atomic orbital electron populations 1.22193 0.78055 1.04399 1.02707 1.48116 1.08322 1.06283 1.71115 1.18781 0.91118 0.80393 0.96165 1.21719 1.36689 1.06541 0.92872 0.92650 1.25903 0.94933 0.96467 1.02076 1.70072 1.38949 1.14849 1.33065 0.85343 0.77832 0.78480 0.79009 1.18863 1.19395 1.20852 1.21270 0.87487 0.86517 0.75649 1.90613 1.17111 1.88172 1.52392 1.21211 0.98759 0.89567 1.01271 0.86402 1.21738 1.00069 1.00198 0.93259 1.21560 0.97876 0.91406 1.03325 1.22333 0.97552 1.00578 0.87639 1.61925 1.35528 1.00446 1.27550 1.21052 0.92920 0.87356 1.02297 1.19534 0.97295 0.95386 0.92848 1.21403 0.99376 0.95152 0.98325 1.21306 0.95126 0.96113 0.97793 1.21425 1.02909 1.01328 0.91862 1.17965 0.98015 0.96401 0.82026 1.91470 1.83651 1.91194 1.46852 1.21081 0.99065 0.96282 0.99829 1.21601 0.93571 0.87943 1.01002 0.91343 0.91269 0.88248 0.96012 0.98534 0.92414 0.93683 0.89512 0.89072 0.89866 0.88533 0.95130 0.92846 0.89699 0.83941 0.82089 0.83228 0.85018 0.91274 0.95930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 9.91 127.77 1.27 3.33 16 2 N -0.61 -26.25 2.86 -851.13 -2.43 -28.68 16 3 C 0.26 14.14 5.19 85.64 0.44 14.58 16 4 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 5 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 6 C 0.00 0.29 5.46 84.65 0.46 0.75 16 7 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 8 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 9 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.50 21.29 6.95 87.66 0.61 21.90 16 13 O -0.60 -31.73 15.52 -3.04 -0.05 -31.77 16 14 C -0.09 -2.53 1.87 -11.49 -0.02 -2.55 16 15 H 0.12 2.96 7.75 -2.39 -0.02 2.95 16 16 C -0.12 -2.83 4.97 30.68 0.15 -2.68 16 17 C -0.10 -1.79 6.09 30.65 0.19 -1.61 16 18 C 0.05 0.82 5.16 86.33 0.45 1.27 16 19 N -0.53 -11.23 4.65 -900.97 -4.19 -15.42 16 20 C 0.09 1.66 5.12 85.56 0.44 2.10 16 21 C -0.05 -0.81 4.89 -19.87 -0.10 -0.91 16 22 C -0.12 -1.53 7.88 22.27 0.18 -1.36 16 23 C -0.09 -0.88 10.04 22.26 0.22 -0.66 16 24 C -0.16 -2.05 10.03 22.31 0.22 -1.83 16 25 C 0.07 1.34 7.30 22.38 0.16 1.50 16 26 F -0.15 -3.15 17.27 44.97 0.78 -2.37 16 27 C -0.14 -2.58 9.68 22.31 0.22 -2.36 16 28 C 0.09 2.46 4.08 86.32 0.35 2.82 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 31 H 0.10 2.36 4.18 -2.39 -0.01 2.35 16 32 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 33 H 0.00 -0.22 7.34 -2.39 -0.02 -0.24 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 2.03 5.31 -2.38 -0.01 2.01 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.40 5.75 -2.39 -0.01 1.39 16 40 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.05 0.93 8.06 -2.39 -0.02 0.91 16 42 H 0.08 1.59 7.92 -2.39 -0.02 1.57 16 43 H 0.14 1.31 7.95 -2.91 -0.02 1.29 16 44 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 45 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.07 2.08 8.01 -2.39 -0.02 2.07 16 48 H 0.02 0.74 8.00 -2.38 -0.02 0.72 16 Total: -1.00 -75.38 385.83 2.85 -72.52 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.95 Total: 11.99 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.48 Total: 3.32 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -6.33 Total: -100.59 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.77 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.38 2.85 -72.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371498140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.143 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds