Wall clock time and date at job start Tue Mar 31 2020 19:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47033 * 240.00353 * 3 2 1 5 5 H 1.48504 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47282 * 120.00331 * 3 2 1 7 7 C 1.37876 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00586 * 187.85299 * 7 2 1 9 9 C 1.50703 * 120.00014 * 7.84749 * 7 2 1 10 10 C 1.53000 * 115.54804 * 273.95147 * 9 7 2 11 11 N 1.46496 * 109.47280 * 293.85605 * 10 9 7 12 12 C 1.34779 * 120.00059 * 183.35209 * 11 10 9 13 13 O 1.21289 * 119.99848 * 5.23171 * 12 11 10 14 14 C 1.50693 * 120.00204 * 185.22824 * 12 11 10 15 15 C 1.53000 * 109.47201 * 144.75646 * 14 12 11 16 16 C 1.53003 * 109.47290 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47138 * 300.00381 * 16 15 14 18 18 N 1.46499 * 109.47055 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99547 * 154.72275 * 18 17 16 20 20 O 1.21281 * 120.00640 * 0.27843 * 19 18 17 21 21 C 1.50702 * 119.99629 * 180.27680 * 19 18 17 22 22 C 1.53005 * 117.49810 * 248.74491 * 21 19 18 23 23 C 1.52998 * 117.49913 * 180.08921 * 21 19 18 24 24 C 1.53000 * 109.47341 * 59.99650 * 17 16 15 25 25 C 1.53000 * 109.47283 * 264.76062 * 14 12 11 26 26 C 1.53000 * 117.49806 * 59.62391 * 9 7 2 27 27 C 1.53002 * 117.49792 * 128.28206 * 9 7 2 28 28 H 0.96999 * 119.99924 * 5.02153 * 1 2 3 29 29 H 1.09007 * 109.47074 * 173.85524 * 10 9 7 30 30 H 1.09002 * 109.46947 * 53.85890 * 10 9 7 31 31 H 0.96996 * 120.00424 * 3.35222 * 11 10 9 32 32 H 1.09005 * 109.47235 * 24.75884 * 14 12 11 33 33 H 1.08999 * 109.47310 * 60.00470 * 15 14 12 34 34 H 1.08996 * 109.47248 * 299.99990 * 15 14 12 35 35 H 1.08994 * 109.47309 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.47129 * 59.99706 * 16 15 14 37 37 H 1.09004 * 109.47272 * 299.99737 * 17 16 15 38 38 H 0.96998 * 120.00392 * 334.99469 * 18 17 16 39 39 H 1.09001 * 115.55134 * 34.41191 * 21 19 18 40 40 H 1.09003 * 117.49618 * 0.02562 * 22 21 19 41 41 H 1.09002 * 117.49940 * 145.01983 * 22 21 19 42 42 H 1.08998 * 117.50143 * 214.97802 * 23 21 19 43 43 H 1.09004 * 117.50033 * 359.97438 * 23 21 19 44 44 H 1.09005 * 109.46831 * 60.00389 * 24 17 16 45 45 H 1.09003 * 109.47102 * 180.02562 * 24 17 16 46 46 H 1.08999 * 109.46992 * 299.99385 * 25 14 12 47 47 H 1.08994 * 109.47254 * 59.99700 * 25 14 12 48 48 H 1.09001 * 117.49540 * 215.01017 * 26 9 7 49 49 H 1.09001 * 117.49881 * 0.02562 * 26 9 7 50 50 H 1.09000 * 117.50212 * 359.97438 * 27 9 7 51 51 H 1.09005 * 117.49599 * 144.98060 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0770 -1.1986 0.1273 9 6 1.2616 -2.4930 -0.1793 10 6 0.6915 -3.1086 1.1001 11 7 1.7912 -3.5178 1.9772 12 6 1.5278 -4.1499 3.1381 13 8 0.3890 -4.4644 3.4125 14 6 2.6482 -4.4657 4.0951 15 6 2.1431 -4.3332 5.5333 16 6 3.2807 -4.6533 6.5050 17 6 3.7687 -6.0835 6.2656 18 7 4.8584 -6.3898 7.1956 19 6 5.1081 -7.6677 7.5436 20 8 4.4340 -8.5645 7.0830 21 6 6.2251 -7.9822 8.5051 22 6 7.4483 -8.7160 7.9514 23 6 6.4597 -9.4521 8.8590 24 6 4.2738 -6.2161 4.8274 25 6 3.1356 -5.8961 3.8555 26 6 0.4603 -2.6767 -1.4697 27 6 1.7641 -3.4511 -1.2612 28 1 -0.4850 0.8368 -0.0735 29 1 0.0861 -3.9788 0.8462 30 1 0.0725 -2.3724 1.6129 31 1 2.7089 -3.3340 1.7225 32 1 3.4713 -3.7696 3.9335 33 1 1.3201 -5.0293 5.6950 34 1 1.7959 -3.3142 5.7040 35 1 2.9208 -4.5593 7.5295 36 1 4.1035 -3.9569 6.3432 37 1 2.9460 -6.7800 6.4273 38 1 5.3977 -5.6726 7.5639 39 1 6.3935 -7.2429 9.2882 40 1 7.4452 -8.9707 6.8916 41 1 8.4213 -8.4596 8.3705 42 1 6.7827 -9.6799 9.8748 43 1 5.8058 -10.1917 8.3967 44 1 5.0966 -5.5196 4.6657 45 1 4.6210 -7.2351 4.6568 46 1 2.3126 -6.5922 4.0172 47 1 3.4954 -5.9905 2.8310 48 1 -0.4732 -3.2360 -1.4070 49 1 0.4708 -1.8582 -2.1894 50 1 2.6318 -3.1417 -1.8440 51 1 1.6888 -4.5200 -1.0614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431180552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:44 Heat of formation + Delta-G solvation = -52.748113 kcal Electronic energy + Delta-G solvation = -28703.329143 eV Core-core repulsion = 24795.847085 eV Total energy + Delta-G solvation = -3907.482058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.52513 -39.57655 -37.88969 -36.69631 -36.23141 -34.26086 -33.25700 -31.99774 -30.93777 -30.04722 -26.51965 -25.44455 -24.73773 -22.91864 -22.83171 -22.43542 -21.21162 -20.58576 -20.05265 -19.60146 -19.10435 -17.75354 -16.88718 -16.56685 -16.04203 -15.53539 -15.47588 -14.85976 -14.73675 -14.65479 -14.53860 -14.12568 -13.88195 -13.80989 -13.34978 -13.07236 -12.87286 -12.66160 -12.50737 -12.30348 -11.97019 -11.71069 -11.64881 -11.58098 -11.32826 -11.23922 -11.09637 -11.02969 -10.91662 -10.91225 -10.60432 -10.55760 -10.39007 -10.28792 -10.06796 -9.68524 -9.27281 -9.17990 -8.96339 -8.49516 -8.27397 -8.08989 -6.11875 -4.19899 2.21834 2.81481 3.19878 3.24244 3.31006 3.31982 3.47040 3.86046 4.28802 4.33426 4.38992 4.47035 4.51595 4.59662 4.74027 4.89951 4.98799 5.10601 5.16956 5.18067 5.24715 5.27734 5.29774 5.34688 5.38954 5.46223 5.52837 5.62285 5.72464 5.76487 5.86188 5.90708 6.00784 6.05863 6.08179 6.20906 6.26481 6.32405 6.36236 6.45723 6.57063 6.67801 6.88058 7.07159 7.23766 7.29090 7.41382 7.46162 7.77857 7.97768 8.30482 8.32467 8.80889 8.90491 9.47302 10.96755 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.002132 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.814496 B =13131.542653 C =13508.639281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.162 3.838 11 N -0.703 5.703 12 C 0.508 3.492 13 O -0.557 6.557 14 C -0.106 4.106 15 C -0.098 4.098 16 C -0.123 4.123 17 C 0.143 3.857 18 N -0.722 5.722 19 C 0.541 3.459 20 O -0.539 6.539 21 C -0.197 4.197 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.103 4.103 26 C -0.149 4.149 27 C -0.210 4.210 28 H 0.262 0.738 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.399 0.601 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.400 0.600 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.176 -12.033 15.959 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.026 3.974 10 C 0.039 3.961 11 N -0.351 5.351 12 C 0.293 3.707 13 O -0.437 6.437 14 C -0.128 4.128 15 C -0.136 4.136 16 C -0.161 4.161 17 C 0.039 3.961 18 N -0.373 5.373 19 C 0.328 3.672 20 O -0.415 6.415 21 C -0.218 4.218 22 C -0.190 4.190 23 C -0.186 4.186 24 C -0.163 4.163 25 C -0.142 4.142 26 C -0.187 4.187 27 C -0.247 4.247 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.234 0.766 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.097 0.903 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.662 -12.734 15.866 23.963 hybrid contribution 1.105 1.652 -0.091 1.989 sum 13.767 -11.082 15.775 23.689 Atomic orbital electron populations 1.70011 1.05875 1.27133 1.47815 1.24974 0.94780 0.98938 0.94396 0.86729 0.79709 0.83331 0.78622 1.20254 1.21288 1.20216 1.20304 0.92883 0.88867 1.51642 0.92267 1.19047 0.98548 0.94035 0.85757 1.21008 0.87582 0.96530 0.90990 1.46042 1.11390 1.57428 1.20245 1.20446 0.89885 0.78003 0.82346 1.90649 1.22986 1.53798 1.76236 1.21328 0.97528 0.98650 0.95283 1.21310 0.97537 1.03125 0.91655 1.21813 0.99175 0.95013 1.00145 1.21090 0.89384 0.97239 0.88426 1.46040 1.35649 1.07907 1.47668 1.19675 0.83936 0.82662 0.80961 1.90715 1.49679 1.45963 1.55178 1.22224 0.98482 0.98522 1.02554 1.22953 0.93158 1.02295 1.00634 1.22964 1.02017 0.92737 1.00884 1.21897 0.98295 1.02226 0.93846 1.21417 0.98351 0.94923 0.99512 1.22490 0.92426 1.00999 1.02761 1.23017 0.98507 0.95685 1.07492 0.92806 0.94431 0.91071 0.76664 0.89317 0.90336 0.90919 0.91066 0.91190 0.89170 0.76600 0.85921 0.88194 0.87776 0.87942 0.87356 0.91505 0.91294 0.90916 0.91014 0.91663 0.89859 0.90349 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.01 12.93 55.43 0.72 -23.29 16 2 C 0.07 1.92 5.37 -17.82 -0.10 1.83 16 3 Si 0.89 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.50 -12.64 8.66 -34.44 -0.30 -12.94 16 8 H 0.06 1.46 7.83 -52.49 -0.41 1.05 16 9 C 0.03 0.63 1.38 -155.66 -0.21 0.41 16 10 C 0.16 3.67 5.51 -4.04 -0.02 3.64 16 11 N -0.70 -13.38 5.48 -60.29 -0.33 -13.71 16 12 C 0.51 9.19 6.82 -10.99 -0.07 9.11 16 13 O -0.56 -12.20 16.28 5.55 0.09 -12.11 16 14 C -0.11 -1.39 2.51 -91.77 -0.23 -1.62 16 15 C -0.10 -1.17 4.87 -26.73 -0.13 -1.30 16 16 C -0.12 -1.09 5.39 -26.73 -0.14 -1.23 16 17 C 0.14 1.39 2.46 -67.93 -0.17 1.22 16 18 N -0.72 -5.84 5.08 -53.80 -0.27 -6.11 16 19 C 0.54 5.42 7.58 -10.98 -0.08 5.33 16 20 O -0.54 -7.66 15.92 5.56 0.09 -7.57 16 21 C -0.20 -1.34 6.19 -91.77 -0.57 -1.91 16 22 C -0.15 -0.90 10.24 -26.69 -0.27 -1.17 16 23 C -0.15 -0.99 10.05 -26.70 -0.27 -1.26 16 24 C -0.12 -1.25 5.50 -26.70 -0.15 -1.40 16 25 C -0.10 -1.23 5.19 -26.70 -0.14 -1.37 16 26 C -0.15 -3.38 9.41 -26.69 -0.25 -3.63 16 27 C -0.21 -4.33 9.96 -26.69 -0.27 -4.59 16 28 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 29 H 0.04 0.85 8.07 -51.92 -0.42 0.44 16 30 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 31 H 0.40 6.91 8.37 -40.82 -0.34 6.57 16 32 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.09 7.57 -51.93 -0.39 0.70 16 38 H 0.40 2.10 8.60 -40.82 -0.35 1.75 16 39 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 0.92 7.67 -51.93 -0.40 0.52 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 50 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 51 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 416.32 15.07 6.27 6.27 Total: -1.00 -31.64 416.32 -10.87 -42.51 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -9.04 Total: 9.65 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.37 Total: -10.87 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.11 Total: -43.11 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.18 Total: -19.67 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.64 -10.87 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.234 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds