Wall clock time and date at job start Tue Mar 31 2020 19:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47033 * 240.00353 * 3 2 1 5 5 H 1.48504 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47282 * 120.00331 * 3 2 1 7 7 C 1.37876 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00586 * 187.85299 * 7 2 1 9 9 C 1.50703 * 120.00014 * 7.84749 * 7 2 1 10 10 C 1.53000 * 115.54804 * 273.95147 * 9 7 2 11 11 N 1.46496 * 109.47280 * 293.85605 * 10 9 7 12 12 C 1.34779 * 120.00059 * 183.35209 * 11 10 9 13 13 O 1.21289 * 119.99848 * 5.23171 * 12 11 10 14 14 C 1.50693 * 120.00204 * 185.22824 * 12 11 10 15 15 C 1.53000 * 109.47201 * 144.75646 * 14 12 11 16 16 C 1.53003 * 109.47290 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47138 * 300.00381 * 16 15 14 18 18 N 1.46499 * 109.47055 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99547 * 154.72275 * 18 17 16 20 20 O 1.21281 * 120.00640 * 0.27843 * 19 18 17 21 21 C 1.50702 * 119.99629 * 180.27680 * 19 18 17 22 22 C 1.53005 * 117.49810 * 248.74491 * 21 19 18 23 23 C 1.52998 * 117.49913 * 180.08921 * 21 19 18 24 24 C 1.53000 * 109.47341 * 59.99650 * 17 16 15 25 25 C 1.53000 * 109.47283 * 264.76062 * 14 12 11 26 26 C 1.53000 * 117.49806 * 59.62391 * 9 7 2 27 27 C 1.53002 * 117.49792 * 128.28206 * 9 7 2 28 28 H 0.96999 * 119.99924 * 5.02153 * 1 2 3 29 29 H 1.09007 * 109.47074 * 173.85524 * 10 9 7 30 30 H 1.09002 * 109.46947 * 53.85890 * 10 9 7 31 31 H 0.96996 * 120.00424 * 3.35222 * 11 10 9 32 32 H 1.09005 * 109.47235 * 24.75884 * 14 12 11 33 33 H 1.08999 * 109.47310 * 60.00470 * 15 14 12 34 34 H 1.08996 * 109.47248 * 299.99990 * 15 14 12 35 35 H 1.08994 * 109.47309 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.47129 * 59.99706 * 16 15 14 37 37 H 1.09004 * 109.47272 * 299.99737 * 17 16 15 38 38 H 0.96998 * 120.00392 * 334.99469 * 18 17 16 39 39 H 1.09001 * 115.55134 * 34.41191 * 21 19 18 40 40 H 1.09003 * 117.49618 * 0.02562 * 22 21 19 41 41 H 1.09002 * 117.49940 * 145.01983 * 22 21 19 42 42 H 1.08998 * 117.50143 * 214.97802 * 23 21 19 43 43 H 1.09004 * 117.50033 * 359.97438 * 23 21 19 44 44 H 1.09005 * 109.46831 * 60.00389 * 24 17 16 45 45 H 1.09003 * 109.47102 * 180.02562 * 24 17 16 46 46 H 1.08999 * 109.46992 * 299.99385 * 25 14 12 47 47 H 1.08994 * 109.47254 * 59.99700 * 25 14 12 48 48 H 1.09001 * 117.49540 * 215.01017 * 26 9 7 49 49 H 1.09001 * 117.49881 * 0.02562 * 26 9 7 50 50 H 1.09000 * 117.50212 * 359.97438 * 27 9 7 51 51 H 1.09005 * 117.49599 * 144.98060 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0770 -1.1986 0.1273 9 6 1.2616 -2.4930 -0.1793 10 6 0.6915 -3.1086 1.1001 11 7 1.7912 -3.5178 1.9772 12 6 1.5278 -4.1499 3.1381 13 8 0.3890 -4.4644 3.4125 14 6 2.6482 -4.4657 4.0951 15 6 2.1431 -4.3332 5.5333 16 6 3.2807 -4.6533 6.5050 17 6 3.7687 -6.0835 6.2656 18 7 4.8584 -6.3898 7.1956 19 6 5.1081 -7.6677 7.5436 20 8 4.4340 -8.5645 7.0830 21 6 6.2251 -7.9822 8.5051 22 6 7.4483 -8.7160 7.9514 23 6 6.4597 -9.4521 8.8590 24 6 4.2738 -6.2161 4.8274 25 6 3.1356 -5.8961 3.8555 26 6 0.4603 -2.6767 -1.4697 27 6 1.7641 -3.4511 -1.2612 28 1 -0.4850 0.8368 -0.0735 29 1 0.0861 -3.9788 0.8462 30 1 0.0725 -2.3724 1.6129 31 1 2.7089 -3.3340 1.7225 32 1 3.4713 -3.7696 3.9335 33 1 1.3201 -5.0293 5.6950 34 1 1.7959 -3.3142 5.7040 35 1 2.9208 -4.5593 7.5295 36 1 4.1035 -3.9569 6.3432 37 1 2.9460 -6.7800 6.4273 38 1 5.3977 -5.6726 7.5639 39 1 6.3935 -7.2429 9.2882 40 1 7.4452 -8.9707 6.8916 41 1 8.4213 -8.4596 8.3705 42 1 6.7827 -9.6799 9.8748 43 1 5.8058 -10.1917 8.3967 44 1 5.0966 -5.5196 4.6657 45 1 4.6210 -7.2351 4.6568 46 1 2.3126 -6.5922 4.0172 47 1 3.4954 -5.9905 2.8310 48 1 -0.4732 -3.2360 -1.4070 49 1 0.4708 -1.8582 -2.1894 50 1 2.6318 -3.1417 -1.8440 51 1 1.6888 -4.5200 -1.0614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431180552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:43 Heat of formation + Delta-G solvation = -72.350204 kcal Electronic energy + Delta-G solvation = -28704.179154 eV Core-core repulsion = 24795.847085 eV Total energy + Delta-G solvation = -3908.332069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.43645 -40.78535 -39.04154 -38.29438 -36.93365 -35.19568 -34.90769 -33.96158 -31.83228 -31.03911 -28.19013 -27.19990 -25.68182 -23.78590 -23.51267 -23.25856 -22.94142 -21.45336 -21.34508 -21.02011 -20.43444 -18.43587 -18.40565 -17.73810 -17.40008 -16.74720 -16.65689 -16.24680 -16.12613 -15.75265 -15.57545 -15.30899 -15.04959 -14.89999 -14.72931 -14.46185 -14.01117 -13.75256 -13.51268 -13.47033 -13.32724 -13.15985 -12.98873 -12.75096 -12.67469 -12.41943 -12.37931 -12.28617 -12.13619 -12.05727 -11.54656 -11.51774 -11.48378 -11.42596 -11.31630 -10.93525 -10.81598 -10.68829 -10.43980 -10.05354 -10.02256 -9.82888 -8.10404 -6.23100 1.44947 1.46513 1.50460 1.53226 1.72863 2.12348 2.39476 2.45837 2.95116 3.18843 3.47166 3.61018 3.68059 3.73864 3.83907 3.93521 4.00140 4.03333 4.19736 4.23210 4.25482 4.34976 4.37185 4.43441 4.49763 4.54608 4.63915 4.68256 4.72853 4.76656 4.83797 4.92272 4.97690 5.00580 5.03662 5.05716 5.06604 5.14807 5.17310 5.24299 5.25375 5.29006 5.37675 5.54315 5.57003 5.59377 5.69157 5.78149 6.36295 6.60081 6.79409 6.85708 7.29418 7.41148 7.47035 8.97979 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.002132 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.814496 B =13131.542653 C =13508.639281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.005 3.995 10 C 0.178 3.822 11 N -0.698 5.698 12 C 0.504 3.496 13 O -0.600 6.600 14 C -0.094 4.094 15 C -0.098 4.098 16 C -0.109 4.109 17 C 0.145 3.855 18 N -0.707 5.707 19 C 0.533 3.467 20 O -0.591 6.591 21 C -0.197 4.197 22 C -0.142 4.142 23 C -0.159 4.159 24 C -0.114 4.114 25 C -0.098 4.098 26 C -0.162 4.162 27 C -0.175 4.175 28 H 0.258 0.742 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.411 0.589 32 H 0.117 0.883 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.418 0.582 39 H 0.155 0.845 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.985 -11.396 17.301 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.005 3.995 10 C 0.054 3.946 11 N -0.347 5.347 12 C 0.292 3.708 13 O -0.482 6.482 14 C -0.116 4.116 15 C -0.137 4.137 16 C -0.147 4.147 17 C 0.040 3.960 18 N -0.358 5.358 19 C 0.322 3.678 20 O -0.471 6.471 21 C -0.217 4.217 22 C -0.179 4.179 23 C -0.196 4.196 24 C -0.152 4.152 25 C -0.137 4.137 26 C -0.200 4.200 27 C -0.212 4.212 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.247 0.753 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.256 0.744 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.107 0.893 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.537 -12.071 17.221 26.754 hybrid contribution -0.140 1.391 -0.526 1.493 sum 16.398 -10.681 16.695 25.724 Atomic orbital electron populations 1.70149 1.07358 1.27514 1.49526 1.25727 0.95415 1.02186 0.94461 0.85747 0.78366 0.79327 0.78973 1.19591 1.22001 1.19258 1.20632 0.93277 0.89606 1.50432 0.91542 1.19088 0.99568 0.94677 0.86206 1.20550 0.88150 0.94927 0.91021 1.45946 1.11003 1.57501 1.20287 1.21398 0.90643 0.76507 0.82266 1.90630 1.25333 1.55282 1.76975 1.21354 0.96136 0.99877 0.94193 1.21300 0.98267 1.02225 0.91877 1.21706 0.98634 0.94586 0.99752 1.20920 0.89147 0.97206 0.88749 1.45868 1.35022 1.08049 1.46813 1.20324 0.84138 0.82488 0.80895 1.90699 1.51699 1.47519 1.57198 1.22306 0.97583 0.99263 1.02592 1.23035 0.93938 1.01064 0.99855 1.23011 1.02236 0.92208 1.02188 1.21803 0.98007 1.02070 0.93356 1.21367 0.98306 0.93490 1.00541 1.22436 0.93844 1.01337 1.02381 1.22997 0.97277 0.96194 1.04769 0.93271 0.95201 0.95319 0.75334 0.86447 0.92760 0.91382 0.89765 0.88370 0.92281 0.74403 0.82766 0.89651 0.84950 0.85622 0.90078 0.88998 0.92601 0.93239 0.90409 0.91413 0.91673 0.89321 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.05 12.93 21.45 0.28 -50.78 16 2 C 0.02 1.19 5.37 84.65 0.45 1.64 16 3 Si 0.95 41.21 29.55 68.60 2.03 43.24 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.50 -25.05 8.66 25.60 0.22 -24.83 16 8 H 0.07 3.15 7.83 -2.91 -0.02 3.13 16 9 C 0.01 0.25 1.38 -52.93 -0.07 0.17 16 10 C 0.18 8.22 5.51 86.38 0.48 8.70 16 11 N -0.70 -26.34 5.48 -463.05 -2.54 -28.88 16 12 C 0.50 18.30 6.82 87.65 0.60 18.89 16 13 O -0.60 -27.23 16.28 -3.06 -0.05 -27.28 16 14 C -0.09 -2.33 2.51 -11.54 -0.03 -2.36 16 15 C -0.10 -2.27 4.87 30.60 0.15 -2.12 16 16 C -0.11 -1.63 5.39 30.60 0.16 -1.46 16 17 C 0.14 2.61 2.46 44.99 0.11 2.72 16 18 N -0.71 -9.77 5.08 -442.52 -2.25 -12.02 16 19 C 0.53 10.09 7.58 87.66 0.66 10.75 16 20 O -0.59 -17.25 15.92 -3.03 -0.05 -17.30 16 21 C -0.20 -2.20 6.19 -11.54 -0.07 -2.28 16 22 C -0.14 -1.33 10.24 30.62 0.31 -1.02 16 23 C -0.16 -1.90 10.05 30.62 0.31 -1.59 16 24 C -0.11 -2.09 5.50 30.61 0.17 -1.93 16 25 C -0.10 -2.24 5.19 30.61 0.16 -2.09 16 26 C -0.16 -7.39 9.41 30.62 0.29 -7.10 16 27 C -0.18 -6.93 9.96 30.62 0.30 -6.63 16 28 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 29 H 0.03 1.40 8.07 -2.38 -0.02 1.38 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.41 13.52 8.37 -92.71 -0.78 12.75 16 32 H 0.12 2.29 8.13 -2.38 -0.02 2.27 16 33 H 0.05 1.51 7.86 -2.39 -0.02 1.50 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.47 7.57 -2.39 -0.02 1.45 16 38 H 0.42 2.75 8.60 -92.71 -0.80 1.95 16 39 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 1.43 7.67 -2.38 -0.02 1.41 16 44 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 49 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 50 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 51 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -72.45 416.32 0.98 -71.47 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.65 Total: 32.05 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.21 Total: -10.51 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -4.51 Total: -91.67 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.10 Total: -44.58 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -72.45 0.98 -71.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.879 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds