Wall clock time and date at job start Tue Mar 31 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47122 * 2 1 4 4 N 1.46902 * 109.46828 * 119.99123 * 2 1 3 5 5 C 1.46904 * 111.00279 * 275.00056 * 4 2 1 6 6 H 1.08993 * 109.46863 * 35.00128 * 5 4 2 7 7 C 1.52998 * 109.46890 * 275.00276 * 5 4 2 8 8 C 1.53004 * 109.47023 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46844 * 59.99875 * 8 7 5 10 10 C 1.53000 * 109.47175 * 300.00523 * 9 8 7 11 11 C 1.52992 * 109.47521 * 59.99711 * 10 9 8 12 12 H 1.09003 * 109.46856 * 60.00426 * 11 10 9 13 13 O 1.42903 * 109.47269 * 179.97438 * 11 10 9 14 14 C 1.42902 * 113.99901 * 270.00121 * 13 11 10 15 15 F 1.39895 * 109.46982 * 299.99729 * 14 13 11 16 16 F 1.39901 * 109.47125 * 60.00101 * 14 13 11 17 17 C 1.50693 * 109.47222 * 239.99264 * 2 1 3 18 18 O 1.21278 * 120.00245 * 254.23173 * 17 2 1 19 19 N 1.34783 * 119.99695 * 74.23301 * 17 2 1 20 20 C 1.46494 * 119.99951 * 3.64380 * 19 17 2 21 21 C 1.46505 * 119.99559 * 183.64682 * 19 17 2 22 22 C 1.50693 * 109.47166 * 90.00084 * 21 19 17 23 23 H 1.07998 * 120.00251 * 359.97438 * 22 21 19 24 24 C 1.37884 * 120.00146 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99536 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00117 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46950 * 60.00313 * 26 24 22 28 28 H 1.48495 * 109.46990 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47401 * 300.00485 * 26 24 22 30 30 H 1.08995 * 109.46962 * 56.06315 * 1 2 3 31 31 H 1.09001 * 109.47166 * 176.06670 * 1 2 3 32 32 H 1.09004 * 109.47033 * 296.06366 * 1 2 3 33 33 H 1.00899 * 111.00319 * 38.96043 * 4 2 1 34 34 H 1.09005 * 109.47390 * 300.00055 * 7 5 4 35 35 H 1.08999 * 109.47585 * 60.00146 * 7 5 4 36 36 H 1.08995 * 109.47185 * 300.00477 * 8 7 5 37 37 H 1.08994 * 109.46947 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.46825 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.46825 * 60.00211 * 9 8 7 40 40 H 1.09003 * 109.46569 * 299.99272 * 10 9 8 41 41 H 1.09001 * 109.46862 * 180.02562 * 10 9 8 42 42 H 1.09003 * 109.46853 * 179.97438 * 14 13 11 43 43 H 1.09001 * 109.47293 * 84.66559 * 20 19 17 44 44 H 1.09008 * 109.46698 * 204.66356 * 20 19 17 45 45 H 1.08998 * 109.47161 * 324.65889 * 20 19 17 46 46 H 1.08997 * 109.46513 * 210.00110 * 21 19 17 47 47 H 1.09000 * 109.47373 * 329.99707 * 21 19 17 48 48 H 0.97000 * 119.99615 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6923 1.1996 5 6 2.0824 0.2229 2.3470 6 1 1.2576 0.9332 2.2906 7 6 3.4111 0.9812 2.3223 8 6 3.4762 1.9349 3.5170 9 6 3.3704 1.1331 4.8159 10 6 2.0418 0.3748 4.8404 11 6 1.9767 -0.5788 3.6458 12 1 2.8016 -1.2891 3.7025 13 8 0.7360 -1.2875 3.6690 14 6 0.7817 -2.5154 4.3986 15 9 1.7318 -3.3652 3.8222 16 9 1.1336 -2.2555 5.7274 17 6 2.0324 -0.7105 -1.2303 18 8 2.5036 -1.8242 -1.1375 19 7 1.9580 -0.1083 -2.4338 20 6 1.4630 1.2667 -2.5355 21 6 2.3720 -0.8290 -3.6403 22 6 1.1899 -1.5647 -4.2165 23 1 0.2265 -1.5021 -3.7324 24 6 1.3381 -2.3178 -5.3620 25 7 2.5113 -2.3944 -5.9513 26 14 -0.1271 -3.2303 -6.0759 27 1 -1.1953 -2.2581 -6.4215 28 1 0.2923 -3.9597 -7.2995 29 1 -0.6435 -4.1979 -5.0748 30 1 -0.3633 0.5737 -0.8526 31 1 -0.3633 -1.0253 -0.0705 32 1 -0.3633 0.4515 0.9232 33 1 1.4496 -1.4978 1.4103 34 1 4.2360 0.2708 2.3786 35 1 3.4862 1.5527 1.3972 36 1 2.6514 2.6451 3.4603 37 1 4.4229 2.4747 3.4997 38 1 3.4173 1.8125 5.6670 39 1 4.1953 0.4228 4.8726 40 1 1.2170 1.0851 4.7837 41 1 1.9664 -0.1960 5.7659 42 1 -0.1981 -2.9921 4.3692 43 1 2.2813 1.9622 -2.3489 44 1 1.0632 1.4359 -3.5354 45 1 0.6761 1.4251 -1.7980 46 1 2.7517 -0.1191 -4.3751 47 1 3.1556 -1.5429 -3.3862 48 1 2.6155 -2.9239 -6.7574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000502486662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:26 Heat of formation + Delta-G solvation = -200.944164 kcal Electronic energy + Delta-G solvation = -30836.591347 eV Core-core repulsion = 26368.453496 eV Total energy + Delta-G solvation = -4468.137851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.29607 -47.39019 -39.99166 -38.87329 -36.81116 -35.35773 -34.64381 -32.59238 -31.03395 -30.43033 -27.99204 -27.32931 -25.88406 -25.65087 -24.08239 -22.81637 -22.29961 -21.26465 -20.28156 -18.60649 -18.49462 -17.94068 -17.86157 -16.69070 -16.44965 -15.68374 -15.55604 -15.05532 -14.84622 -14.69743 -14.40993 -14.29290 -14.21197 -14.06240 -13.77058 -13.60648 -13.39048 -13.15455 -13.03808 -12.83624 -12.51926 -12.35436 -12.21034 -12.02702 -11.87059 -11.69200 -11.61977 -11.39390 -11.25172 -11.16873 -11.07441 -10.87126 -10.84519 -10.59923 -10.51030 -10.22737 -10.11203 -9.59114 -8.84082 -8.39614 -8.17347 -7.53085 -6.00278 -4.05153 2.68546 3.33400 3.38005 3.40277 3.42139 3.55722 3.72789 4.20319 4.28746 4.40354 4.47997 4.55277 4.62448 4.73048 4.89368 4.91507 5.05407 5.08850 5.15386 5.17750 5.28698 5.29416 5.33902 5.48154 5.51263 5.60654 5.61898 5.75708 5.80996 5.85362 5.88468 5.91016 5.97179 6.03923 6.15499 6.17055 6.34065 6.37502 6.94709 7.20163 7.48430 7.53418 7.63580 7.97161 8.28715 8.53514 8.95570 9.24355 9.60018 11.07615 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.003023 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.739206 B = 9260.977268 C =10301.271355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 H 0.092 0.908 4 N -0.661 5.661 5 C 0.098 3.902 6 H 0.054 0.946 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.140 4.140 11 C 0.078 3.922 12 H 0.084 0.916 13 O -0.382 6.382 14 C 0.404 3.596 15 F -0.201 7.201 16 F -0.210 7.210 17 C 0.513 3.487 18 O -0.525 6.525 19 N -0.606 5.606 20 C 0.078 3.922 21 C 0.247 3.753 22 C -0.526 4.526 23 H 0.056 0.944 24 C 0.061 3.939 25 N -0.895 5.895 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.277 1.277 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.354 0.646 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.165 0.835 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.030 0.970 47 H 0.044 0.956 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 9.534 23.389 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.044 4.044 3 H 0.110 0.890 4 N -0.293 5.293 5 C -0.012 4.012 6 H 0.072 0.928 7 C -0.147 4.147 8 C -0.160 4.160 9 C -0.155 4.155 10 C -0.178 4.178 11 C 0.021 3.979 12 H 0.102 0.898 13 O -0.303 6.303 14 C 0.313 3.687 15 F -0.183 7.183 16 F -0.192 7.192 17 C 0.299 3.701 18 O -0.400 6.400 19 N -0.339 5.339 20 C -0.066 4.066 21 C 0.127 3.873 22 C -0.565 4.565 23 H 0.074 0.926 24 C -0.141 4.141 25 N -0.534 5.534 26 Si 0.725 3.275 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.174 0.826 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.182 0.818 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.062 0.938 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.334 8.961 23.011 24.804 hybrid contribution -1.566 -0.506 -0.184 1.656 sum -3.900 8.455 22.826 24.652 Atomic orbital electron populations 1.22460 0.95333 1.03454 1.02417 1.21528 0.93966 0.98241 0.90713 0.88987 1.60198 1.58432 1.08925 1.01784 1.21565 0.98030 0.93701 0.87914 0.92795 1.21584 0.96893 0.98006 0.98218 1.21596 1.02157 0.97959 0.94263 1.21507 0.96873 0.99062 0.98034 1.22133 0.98937 0.98960 0.97784 1.22552 0.85366 0.94036 0.95975 0.89807 1.88396 1.35863 1.33581 1.72488 1.23151 0.91650 0.81065 0.72874 1.93111 1.69334 1.71471 1.84396 1.93041 1.94079 1.94065 1.38056 1.20098 0.79662 0.86609 0.83775 1.90652 1.44448 1.19397 1.85533 1.48109 1.63870 1.13792 1.08145 1.21760 0.98070 0.83756 1.03020 1.19250 0.96217 0.91939 0.79848 1.21415 0.95923 1.29725 1.09439 0.92604 1.24941 0.96022 0.96380 0.96793 1.69928 1.22637 1.40863 1.19949 0.86570 0.82589 0.79953 0.78359 1.20308 1.21190 1.20211 0.90862 0.91659 0.92152 0.82553 0.90715 0.91071 0.91867 0.91388 0.91428 0.91614 0.90937 0.90645 0.81812 0.94036 0.90726 0.92321 0.95184 0.93816 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.89 37.16 0.33 -2.07 16 2 C 0.07 1.07 1.98 -68.87 -0.14 0.93 16 3 H 0.09 1.24 6.44 -51.93 -0.33 0.91 16 4 N -0.66 -9.82 5.59 -100.96 -0.56 -10.39 16 5 C 0.10 1.11 2.01 -67.71 -0.14 0.97 16 6 H 0.05 0.58 7.10 -51.93 -0.37 0.22 16 7 C -0.11 -1.13 5.41 -26.73 -0.14 -1.27 16 8 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 9 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 10 C -0.14 -1.19 5.39 -26.74 -0.14 -1.33 16 11 C 0.08 0.81 1.95 -26.74 -0.05 0.76 16 12 H 0.08 0.99 7.20 -51.93 -0.37 0.61 16 13 O -0.38 -3.96 9.44 -35.23 -0.33 -4.29 16 14 C 0.40 3.58 6.26 101.05 0.63 4.21 16 15 F -0.20 -2.36 16.63 2.25 0.04 -2.32 16 16 F -0.21 -1.98 15.46 2.25 0.03 -1.94 16 17 C 0.51 10.99 6.97 -10.99 -0.08 10.91 16 18 O -0.52 -13.75 16.05 5.56 0.09 -13.66 16 19 N -0.61 -13.10 2.86 -182.96 -0.52 -13.62 16 20 C 0.08 1.25 9.85 59.84 0.59 1.84 16 21 C 0.25 6.60 5.16 -5.19 -0.03 6.58 16 22 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 23 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 26 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.07 0.96 5.83 -51.93 -0.30 0.65 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.68 7.38 -51.93 -0.38 0.29 16 33 H 0.35 5.54 7.39 -39.29 -0.29 5.25 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.77 7.43 -51.93 -0.39 0.38 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.65 6.50 -51.93 -0.34 0.31 16 42 H 0.17 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.23 8.03 -51.92 -0.42 0.81 16 45 H 0.06 0.78 4.58 -51.93 -0.24 0.54 16 46 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 47 H 0.04 1.33 7.37 -51.93 -0.38 0.95 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -34.36 383.47 -7.25 -41.61 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.58 Total: 2.45 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 0.10 Total: 5.60 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.35 Total: -50.25 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.24 Total: -17.95 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.36 -7.25 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000502486662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.335 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds