Wall clock time and date at job start Tue Mar 31 2020 17:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47122 * 2 1 4 4 N 1.46902 * 109.46828 * 119.99123 * 2 1 3 5 5 C 1.46904 * 111.00279 * 275.00056 * 4 2 1 6 6 H 1.08993 * 109.46863 * 35.00128 * 5 4 2 7 7 C 1.52998 * 109.46890 * 275.00276 * 5 4 2 8 8 C 1.53004 * 109.47023 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46844 * 59.99875 * 8 7 5 10 10 C 1.53000 * 109.47175 * 300.00523 * 9 8 7 11 11 C 1.52992 * 109.47521 * 59.99711 * 10 9 8 12 12 H 1.09003 * 109.46856 * 60.00426 * 11 10 9 13 13 O 1.42903 * 109.47269 * 179.97438 * 11 10 9 14 14 C 1.42902 * 113.99901 * 270.00121 * 13 11 10 15 15 F 1.39895 * 109.46982 * 299.99729 * 14 13 11 16 16 F 1.39901 * 109.47125 * 60.00101 * 14 13 11 17 17 C 1.50693 * 109.47222 * 239.99264 * 2 1 3 18 18 O 1.21278 * 120.00245 * 254.23173 * 17 2 1 19 19 N 1.34783 * 119.99695 * 74.23301 * 17 2 1 20 20 C 1.46494 * 119.99951 * 3.64380 * 19 17 2 21 21 C 1.46505 * 119.99559 * 183.64682 * 19 17 2 22 22 C 1.50693 * 109.47166 * 90.00084 * 21 19 17 23 23 H 1.07998 * 120.00251 * 359.97438 * 22 21 19 24 24 C 1.37884 * 120.00146 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99536 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00117 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46950 * 60.00313 * 26 24 22 28 28 H 1.48495 * 109.46990 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47401 * 300.00485 * 26 24 22 30 30 H 1.08995 * 109.46962 * 56.06315 * 1 2 3 31 31 H 1.09001 * 109.47166 * 176.06670 * 1 2 3 32 32 H 1.09004 * 109.47033 * 296.06366 * 1 2 3 33 33 H 1.00899 * 111.00319 * 38.96043 * 4 2 1 34 34 H 1.09005 * 109.47390 * 300.00055 * 7 5 4 35 35 H 1.08999 * 109.47585 * 60.00146 * 7 5 4 36 36 H 1.08995 * 109.47185 * 300.00477 * 8 7 5 37 37 H 1.08994 * 109.46947 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.46825 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.46825 * 60.00211 * 9 8 7 40 40 H 1.09003 * 109.46569 * 299.99272 * 10 9 8 41 41 H 1.09001 * 109.46862 * 180.02562 * 10 9 8 42 42 H 1.09003 * 109.46853 * 179.97438 * 14 13 11 43 43 H 1.09001 * 109.47293 * 84.66559 * 20 19 17 44 44 H 1.09008 * 109.46698 * 204.66356 * 20 19 17 45 45 H 1.08998 * 109.47161 * 324.65889 * 20 19 17 46 46 H 1.08997 * 109.46513 * 210.00110 * 21 19 17 47 47 H 1.09000 * 109.47373 * 329.99707 * 21 19 17 48 48 H 0.97000 * 119.99615 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6923 1.1996 5 6 2.0824 0.2229 2.3470 6 1 1.2576 0.9332 2.2906 7 6 3.4111 0.9812 2.3223 8 6 3.4762 1.9349 3.5170 9 6 3.3704 1.1331 4.8159 10 6 2.0418 0.3748 4.8404 11 6 1.9767 -0.5788 3.6458 12 1 2.8016 -1.2891 3.7025 13 8 0.7360 -1.2875 3.6690 14 6 0.7817 -2.5154 4.3986 15 9 1.7318 -3.3652 3.8222 16 9 1.1336 -2.2555 5.7274 17 6 2.0324 -0.7105 -1.2303 18 8 2.5036 -1.8242 -1.1375 19 7 1.9580 -0.1083 -2.4338 20 6 1.4630 1.2667 -2.5355 21 6 2.3720 -0.8290 -3.6403 22 6 1.1899 -1.5647 -4.2165 23 1 0.2265 -1.5021 -3.7324 24 6 1.3381 -2.3178 -5.3620 25 7 2.5113 -2.3944 -5.9513 26 14 -0.1271 -3.2303 -6.0759 27 1 -1.1953 -2.2581 -6.4215 28 1 0.2923 -3.9597 -7.2995 29 1 -0.6435 -4.1979 -5.0748 30 1 -0.3633 0.5737 -0.8526 31 1 -0.3633 -1.0253 -0.0705 32 1 -0.3633 0.4515 0.9232 33 1 1.4496 -1.4978 1.4103 34 1 4.2360 0.2708 2.3786 35 1 3.4862 1.5527 1.3972 36 1 2.6514 2.6451 3.4603 37 1 4.4229 2.4747 3.4997 38 1 3.4173 1.8125 5.6670 39 1 4.1953 0.4228 4.8726 40 1 1.2170 1.0851 4.7837 41 1 1.9664 -0.1960 5.7659 42 1 -0.1981 -2.9921 4.3692 43 1 2.2813 1.9622 -2.3489 44 1 1.0632 1.4359 -3.5354 45 1 0.6761 1.4251 -1.7980 46 1 2.7517 -0.1191 -4.3751 47 1 3.1556 -1.5429 -3.3862 48 1 2.6155 -2.9239 -6.7574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000502486662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:25 Heat of formation + Delta-G solvation = -225.250883 kcal Electronic energy + Delta-G solvation = -30837.645366 eV Core-core repulsion = 26368.453496 eV Total energy + Delta-G solvation = -4469.191870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.05766 -48.16947 -41.10216 -40.21113 -37.64920 -36.61995 -36.31231 -34.69241 -32.12470 -31.16844 -29.74382 -28.48071 -27.40600 -26.36446 -25.76457 -24.04569 -23.26352 -22.38112 -21.04060 -19.99222 -19.29420 -18.90389 -18.65288 -18.62674 -17.94797 -17.22887 -16.58748 -16.45968 -16.16809 -15.91842 -15.58373 -15.36610 -15.14225 -14.95648 -14.68500 -14.55995 -14.52428 -14.27045 -14.19396 -13.92777 -13.84420 -13.52936 -13.40310 -13.26075 -13.19683 -13.04824 -12.99764 -12.67646 -12.52524 -12.43560 -12.39101 -12.18231 -12.15046 -11.96863 -11.70159 -11.54305 -11.33950 -10.98707 -10.63695 -10.46693 -9.37118 -9.33508 -8.21136 -6.36699 1.36344 1.41126 1.48397 1.91810 1.98423 2.26727 2.42649 2.72941 3.07678 3.12892 3.49965 3.71568 3.72868 3.79917 3.90805 3.99920 4.05955 4.08929 4.15215 4.20860 4.30744 4.34674 4.39675 4.45913 4.65633 4.70189 4.74731 4.81854 4.85557 4.90695 4.95454 5.02438 5.13429 5.17419 5.22627 5.25036 5.25668 5.30898 5.44256 5.57757 5.60267 5.85568 6.01282 6.08029 6.33121 6.71971 6.86282 7.29950 7.58137 8.85646 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.003023 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.739206 B = 9260.977268 C =10301.271355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 H 0.121 0.879 4 N -0.682 5.682 5 C 0.101 3.899 6 H 0.071 0.929 7 C -0.109 4.109 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.132 4.132 11 C 0.078 3.922 12 H 0.062 0.938 13 O -0.388 6.388 14 C 0.398 3.602 15 F -0.222 7.222 16 F -0.214 7.214 17 C 0.501 3.499 18 O -0.587 6.587 19 N -0.612 5.612 20 C 0.072 3.928 21 C 0.261 3.739 22 C -0.542 4.542 23 H 0.055 0.945 24 C 0.005 3.995 25 N -0.930 5.930 26 Si 0.969 3.031 27 H -0.258 1.258 28 H -0.279 1.279 29 H -0.278 1.278 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.346 0.654 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.207 0.793 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.021 0.979 47 H -0.007 1.007 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 11.652 24.836 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 H 0.138 0.862 4 N -0.314 5.314 5 C -0.008 4.008 6 H 0.089 0.911 7 C -0.147 4.147 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.171 4.171 11 C 0.021 3.979 12 H 0.080 0.920 13 O -0.310 6.310 14 C 0.307 3.693 15 F -0.205 7.205 16 F -0.196 7.196 17 C 0.289 3.711 18 O -0.467 6.467 19 N -0.344 5.344 20 C -0.070 4.070 21 C 0.139 3.861 22 C -0.581 4.581 23 H 0.073 0.927 24 C -0.193 4.193 25 N -0.570 5.570 26 Si 0.793 3.207 27 H -0.182 1.182 28 H -0.204 1.204 29 H -0.203 1.203 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.166 0.834 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.223 0.777 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.039 0.961 47 H 0.011 0.989 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.687 11.147 24.480 27.304 hybrid contribution -0.760 -1.169 -0.605 1.520 sum -5.447 9.978 23.875 26.443 Atomic orbital electron populations 1.22410 0.93313 1.02650 1.04434 1.21395 0.95191 0.98305 0.87901 0.86180 1.60126 1.58667 1.09697 1.02885 1.21662 0.98957 0.93383 0.86820 0.91117 1.21595 0.95686 0.97974 0.99474 1.21559 1.03301 0.97464 0.92898 1.21522 0.96032 0.99123 0.98686 1.22087 0.99816 0.98639 0.96517 1.22524 0.84890 0.93988 0.96518 0.92020 1.88372 1.35569 1.34119 1.72932 1.23828 0.92656 0.80509 0.72284 1.93073 1.70453 1.72115 1.84814 1.93029 1.94238 1.94061 1.38252 1.21309 0.78346 0.86186 0.85213 1.90613 1.47118 1.22347 1.86576 1.48139 1.63738 1.15720 1.06838 1.22073 1.00072 0.80844 1.03990 1.18708 0.94560 0.91140 0.81672 1.21692 0.96226 1.30361 1.09822 0.92677 1.25906 0.99128 0.97133 0.97182 1.70060 1.24879 1.41602 1.20424 0.85447 0.79088 0.78699 0.77450 1.18235 1.20413 1.20329 0.90074 0.93769 0.88880 0.83409 0.92850 0.91387 0.90394 0.90465 0.89520 0.92506 0.89859 0.90788 0.77694 0.91261 0.91293 0.88792 0.96067 0.98895 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.89 71.98 0.64 -3.49 16 2 C 0.09 2.51 1.98 44.17 0.09 2.60 16 3 H 0.12 2.86 6.44 -2.39 -0.02 2.84 16 4 N -0.68 -20.01 5.59 -473.32 -2.64 -22.65 16 5 C 0.10 2.12 2.01 44.91 0.09 2.21 16 6 H 0.07 1.27 7.10 -2.39 -0.02 1.25 16 7 C -0.11 -2.12 5.41 30.59 0.17 -1.95 16 8 C -0.11 -1.50 5.92 30.60 0.18 -1.31 16 9 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 10 C -0.13 -1.96 5.39 30.59 0.16 -1.80 16 11 C 0.08 1.55 1.95 30.59 0.06 1.61 16 12 H 0.06 1.49 7.20 -2.39 -0.02 1.47 16 13 O -0.39 -7.51 9.44 -148.98 -1.41 -8.92 16 14 C 0.40 6.64 6.26 113.37 0.71 7.35 16 15 F -0.22 -5.31 16.63 44.97 0.75 -4.56 16 16 F -0.21 -3.78 15.46 44.97 0.70 -3.09 16 17 C 0.50 21.86 6.97 87.65 0.61 22.47 16 18 O -0.59 -32.42 16.05 -3.02 -0.05 -32.46 16 19 N -0.61 -26.78 2.86 -851.14 -2.43 -29.21 16 20 C 0.07 2.17 9.85 127.77 1.26 3.43 16 21 C 0.26 14.59 5.16 85.63 0.44 15.03 16 22 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 23 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 24 C 0.01 0.31 5.46 84.66 0.46 0.77 16 25 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 26 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 30 H 0.08 1.84 5.83 -2.39 -0.01 1.83 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.70 7.38 -2.39 -0.02 1.68 16 33 H 0.35 10.94 7.39 -89.70 -0.66 10.27 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 1.35 7.43 -2.39 -0.02 1.33 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.14 6.50 -2.39 -0.02 1.12 16 42 H 0.21 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 2.17 8.03 -2.38 -0.02 2.15 16 45 H 0.09 2.16 4.58 -2.39 -0.01 2.15 16 46 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 47 H -0.01 -0.46 7.37 -2.39 -0.02 -0.48 16 48 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.54 383.47 2.83 -76.71 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.31 Total: 20.02 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.29 Total: 13.94 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -4.79 Total: -109.14 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.45 Total: -41.38 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.44 Total: -7.65 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -79.54 2.83 -76.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000502486662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.541 kcal (2) G-P(sol) polarization free energy of solvation -79.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds