Wall clock time and date at job start Tue Mar 31 2020 18:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.50707 * 109.47162 * 269.99844 * 3 2 1 5 5 C 1.38242 * 119.97522 * 269.72578 * 4 3 2 6 6 C 1.38194 * 120.02634 * 179.72714 * 5 4 3 7 7 C 1.38457 * 119.97318 * 0.56320 * 6 5 4 8 8 F 1.35100 * 120.02730 * 179.68420 * 7 6 5 9 9 C 1.38461 * 119.94759 * 359.70835 * 7 6 5 10 10 C 1.38192 * 119.97711 * 359.97438 * 9 7 6 11 11 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 12 12 O 1.21280 * 120.00423 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99795 * 0.02562 * 11 2 1 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 2 15 15 C 1.46839 * 111.00222 * 294.20814 * 14 13 11 16 16 C 1.53034 * 109.52552 * 174.16216 * 15 14 13 17 17 C 1.53123 * 109.28182 * 59.17780 * 16 15 14 18 18 C 1.50696 * 109.57716 * 182.41084 * 17 16 15 19 19 H 1.07997 * 119.99878 * 119.72167 * 18 17 16 20 20 C 1.37871 * 120.00268 * 299.71257 * 18 17 16 21 21 N 1.31519 * 119.99776 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47389 * 90.00350 * 22 20 18 24 24 H 1.48499 * 109.47408 * 210.00272 * 22 20 18 25 25 H 1.48506 * 109.47259 * 330.00410 * 22 20 18 26 26 C 1.53120 * 109.16070 * 302.35293 * 17 16 15 27 27 C 1.46849 * 110.99649 * 169.99608 * 14 13 11 28 28 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 29 29 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 30 30 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 32 32 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 33 33 H 1.08003 * 119.98409 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.01707 * 180.25449 * 6 5 4 35 35 H 1.07997 * 120.01269 * 179.97438 * 9 7 6 36 36 H 1.08005 * 119.99086 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47060 * 299.99722 * 13 11 2 38 38 H 1.09001 * 109.47380 * 59.99809 * 13 11 2 39 39 H 1.09006 * 109.46266 * 294.17473 * 15 14 13 40 40 H 1.09002 * 109.46276 * 54.14664 * 15 14 13 41 41 H 1.09006 * 109.50444 * 299.24199 * 16 15 14 42 42 H 1.09003 * 109.50687 * 179.12283 * 16 15 14 43 43 H 1.09005 * 109.51783 * 62.25186 * 17 16 15 44 44 H 0.97006 * 120.00096 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.50142 * 297.71204 * 26 17 16 46 46 H 1.08998 * 109.50777 * 177.59101 * 26 17 16 47 47 H 1.08991 * 109.46839 * 305.85721 * 27 14 13 48 48 H 1.09005 * 109.46224 * 65.84006 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 3.6036 1.3089 -2.0701 6 6 3.8324 1.7026 -3.3749 7 6 2.9099 2.5023 -4.0280 8 9 3.1355 2.8930 -5.3015 9 6 1.7562 2.9017 -3.3749 10 6 1.5264 2.5014 -2.0723 11 6 2.1388 -1.1672 0.0005 12 8 3.3516 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 7 2.3399 -3.5889 0.0005 15 6 3.1092 -3.6236 -1.2498 16 6 4.1890 -4.7039 -1.1561 17 6 3.5260 -6.0611 -0.9051 18 6 4.5866 -7.1207 -0.7527 19 1 4.6596 -7.6835 0.1661 20 6 5.4637 -7.3719 -1.7864 21 7 5.3750 -6.6864 -2.9053 22 14 6.7779 -8.6859 -1.5979 23 1 6.2439 -9.9907 -2.0642 24 1 7.9655 -8.3184 -2.4101 25 1 7.1693 -8.7932 -0.1693 26 6 2.6921 -5.9837 0.3768 27 6 1.6557 -4.8662 0.2387 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1384 0.5139 33 1 4.3254 0.6893 -1.5587 34 1 4.7327 1.3907 -3.8833 35 1 1.0362 3.5258 -3.8832 36 1 0.6268 2.8132 -1.5624 37 1 0.7583 -2.5299 0.8903 38 1 0.7589 -2.5303 -0.8897 39 1 2.4411 -3.8491 -2.0811 40 1 3.5789 -2.6538 -1.4142 41 1 4.8656 -4.4718 -0.3335 42 1 4.7498 -4.7400 -2.0901 43 1 2.8791 -6.3115 -1.7459 44 1 5.9923 -6.8628 -3.6325 45 1 3.3451 -5.7716 1.2235 46 1 2.1833 -6.9340 0.5380 47 1 1.0697 -4.7990 1.1552 48 1 0.9946 -5.0859 -0.5997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541023119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:57 Heat of formation + Delta-G solvation = -47.794955 kcal Electronic energy + Delta-G solvation = -29000.102230 eV Core-core repulsion = 24969.374651 eV Total energy + Delta-G solvation = -4030.727578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.08089 -40.29598 -39.07422 -37.69905 -35.60070 -33.83729 -32.02155 -31.36206 -31.18150 -29.68826 -27.99106 -27.30245 -25.71053 -24.29676 -23.25150 -22.04175 -21.93731 -21.27951 -19.17985 -18.55390 -17.87520 -17.06430 -16.53616 -16.35716 -16.27258 -16.16291 -15.74931 -15.21678 -14.83882 -14.37884 -14.32891 -13.97391 -13.88850 -13.75225 -13.52843 -13.27023 -12.82539 -12.73446 -12.69676 -12.40333 -12.32702 -12.17803 -12.09018 -11.97096 -11.52793 -11.26491 -11.17713 -10.90138 -10.67937 -10.48851 -10.14928 -9.90336 -9.68809 -9.32952 -9.30745 -8.91872 -8.89405 -8.77942 -8.53999 -8.21342 -7.72119 -5.90018 -3.95117 0.83688 1.01395 2.72735 2.82616 3.36001 3.42726 3.46340 3.46525 4.04078 4.33864 4.44481 4.51204 4.53622 4.65773 4.67789 4.82686 4.95334 5.02206 5.12605 5.29109 5.33899 5.34426 5.40243 5.47572 5.50280 5.70806 5.74036 5.76036 5.88368 5.90676 6.05410 6.14459 6.25219 6.28041 6.31565 6.42861 6.66217 6.69637 6.78627 6.91483 7.10243 7.21266 7.26966 7.52407 7.66812 7.74441 7.90262 8.14244 8.25111 8.29922 8.56361 9.08430 9.68805 11.16151 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.002860 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.368521 B = 9789.260764 C =11382.137282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.158 3.842 4 C -0.118 4.118 5 C -0.063 4.063 6 C -0.153 4.153 7 C 0.099 3.901 8 F -0.142 7.142 9 C -0.160 4.160 10 C -0.081 4.081 11 C 0.516 3.484 12 O -0.505 6.505 13 C 0.038 3.962 14 N -0.519 5.519 15 C 0.055 3.945 16 C -0.100 4.100 17 C 0.047 3.953 18 C -0.509 4.509 19 H 0.054 0.946 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.106 4.106 27 C 0.062 3.938 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.258 0.742 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.955 20.932 3.437 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C 0.035 3.965 4 C -0.119 4.119 5 C -0.082 4.082 6 C -0.172 4.172 7 C 0.079 3.921 8 F -0.120 7.120 9 C -0.179 4.179 10 C -0.099 4.099 11 C 0.304 3.696 12 O -0.378 6.378 13 C -0.093 4.093 14 N -0.244 5.244 15 C -0.072 4.072 16 C -0.138 4.138 17 C 0.029 3.971 18 C -0.547 4.547 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.143 4.143 27 C -0.066 4.066 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.856 20.997 3.615 24.383 hybrid contribution -0.014 -0.682 -1.046 1.249 sum -11.870 20.316 2.569 23.669 Atomic orbital electron populations 1.21796 0.79625 1.03264 1.01792 1.47963 1.06800 1.05471 1.75603 1.20271 0.98929 0.85189 0.92095 1.20350 0.95069 0.98777 0.97729 1.21187 0.97034 0.96626 0.93347 1.21261 1.00279 0.99651 0.96035 1.17789 0.96079 0.98552 0.79649 1.91500 1.94768 1.89332 1.36414 1.21083 0.97239 1.03488 0.96073 1.20870 0.98635 0.96796 0.93619 1.20787 0.88381 0.84894 0.75557 1.90687 1.13680 1.86606 1.46819 1.21967 0.94838 0.90509 1.02031 1.61761 1.23390 1.01462 1.37786 1.22417 0.96206 1.01610 0.86978 1.21600 0.96031 0.93139 1.03011 1.18702 0.93840 0.93188 0.91416 1.21202 1.14716 1.18605 1.00221 0.92791 1.24968 0.97525 0.96212 0.95344 1.69888 1.37863 1.40642 1.04697 0.86640 0.81538 0.82028 0.78045 1.20880 1.21321 1.19961 1.21674 0.96718 0.94475 1.01480 1.22151 0.96177 0.89628 0.98619 0.92404 0.91262 0.90917 0.89676 0.88655 0.84057 0.84538 0.84887 0.85265 0.88626 0.92755 0.96771 0.90867 0.93714 0.89133 0.96296 0.93171 0.92370 0.93104 0.92422 0.95773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.24 59.84 0.61 1.11 16 2 N -0.62 -6.29 2.86 -182.96 -0.52 -6.81 16 3 C 0.16 1.42 5.53 -5.19 -0.03 1.39 16 4 C -0.12 -1.15 5.46 -104.61 -0.57 -1.72 16 5 C -0.06 -0.74 9.70 -39.60 -0.38 -1.12 16 6 C -0.15 -1.76 10.03 -39.52 -0.40 -2.15 16 7 C 0.10 1.10 7.30 -39.42 -0.29 0.81 16 8 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 9 C -0.16 -1.45 10.03 -39.52 -0.40 -1.85 16 10 C -0.08 -0.66 9.70 -39.59 -0.38 -1.04 16 11 C 0.52 7.33 7.35 -10.98 -0.08 7.25 16 12 O -0.51 -9.13 13.45 5.56 0.07 -9.06 16 13 C 0.04 0.53 4.00 -4.97 -0.02 0.51 16 14 N -0.52 -9.58 4.40 -236.11 -1.04 -10.62 16 15 C 0.05 1.16 5.10 -3.84 -0.02 1.14 16 16 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 17 C 0.05 1.20 2.16 -91.65 -0.20 1.01 16 18 C -0.51 -14.34 8.56 -34.44 -0.29 -14.64 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 21 N -0.89 -26.08 11.37 55.43 0.63 -25.45 16 22 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 26 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 27 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 31 H 0.08 0.51 8.02 -51.93 -0.42 0.09 16 32 H 0.10 1.00 7.36 -51.93 -0.38 0.62 16 33 H 0.14 1.81 7.60 -52.48 -0.40 1.41 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.10 1.08 7.95 -51.93 -0.41 0.67 16 38 H 0.05 0.70 7.38 -51.93 -0.38 0.31 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 1.57 5.78 -51.93 -0.30 1.27 16 41 H 0.04 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.09 2.52 6.17 -51.93 -0.32 2.20 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -32.63 386.60 -10.41 -43.03 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.55 Total: -0.42 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.84 Total: -11.65 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.93 Total: -42.88 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.63 -10.41 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541023119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.760 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds