Wall clock time and date at job start Tue Mar 31 2020 18:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.50707 * 109.47162 * 269.99844 * 3 2 1 5 5 C 1.38242 * 119.97522 * 269.72578 * 4 3 2 6 6 C 1.38194 * 120.02634 * 179.72714 * 5 4 3 7 7 C 1.38457 * 119.97318 * 0.56320 * 6 5 4 8 8 F 1.35100 * 120.02730 * 179.68420 * 7 6 5 9 9 C 1.38461 * 119.94759 * 359.70835 * 7 6 5 10 10 C 1.38192 * 119.97711 * 359.97438 * 9 7 6 11 11 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 12 12 O 1.21280 * 120.00423 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99795 * 0.02562 * 11 2 1 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 2 15 15 C 1.46839 * 111.00222 * 294.20814 * 14 13 11 16 16 C 1.53034 * 109.52552 * 174.16216 * 15 14 13 17 17 C 1.53123 * 109.28182 * 59.17780 * 16 15 14 18 18 C 1.50696 * 109.57716 * 182.41084 * 17 16 15 19 19 H 1.07997 * 119.99878 * 119.72167 * 18 17 16 20 20 C 1.37871 * 120.00268 * 299.71257 * 18 17 16 21 21 N 1.31519 * 119.99776 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47389 * 90.00350 * 22 20 18 24 24 H 1.48499 * 109.47408 * 210.00272 * 22 20 18 25 25 H 1.48506 * 109.47259 * 330.00410 * 22 20 18 26 26 C 1.53120 * 109.16070 * 302.35293 * 17 16 15 27 27 C 1.46849 * 110.99649 * 169.99608 * 14 13 11 28 28 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 29 29 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 30 30 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 32 32 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 33 33 H 1.08003 * 119.98409 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.01707 * 180.25449 * 6 5 4 35 35 H 1.07997 * 120.01269 * 179.97438 * 9 7 6 36 36 H 1.08005 * 119.99086 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47060 * 299.99722 * 13 11 2 38 38 H 1.09001 * 109.47380 * 59.99809 * 13 11 2 39 39 H 1.09006 * 109.46266 * 294.17473 * 15 14 13 40 40 H 1.09002 * 109.46276 * 54.14664 * 15 14 13 41 41 H 1.09006 * 109.50444 * 299.24199 * 16 15 14 42 42 H 1.09003 * 109.50687 * 179.12283 * 16 15 14 43 43 H 1.09005 * 109.51783 * 62.25186 * 17 16 15 44 44 H 0.97006 * 120.00096 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.50142 * 297.71204 * 26 17 16 46 46 H 1.08998 * 109.50777 * 177.59101 * 26 17 16 47 47 H 1.08991 * 109.46839 * 305.85721 * 27 14 13 48 48 H 1.09005 * 109.46224 * 65.84006 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 3.6036 1.3089 -2.0701 6 6 3.8324 1.7026 -3.3749 7 6 2.9099 2.5023 -4.0280 8 9 3.1355 2.8930 -5.3015 9 6 1.7562 2.9017 -3.3749 10 6 1.5264 2.5014 -2.0723 11 6 2.1388 -1.1672 0.0005 12 8 3.3516 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 7 2.3399 -3.5889 0.0005 15 6 3.1092 -3.6236 -1.2498 16 6 4.1890 -4.7039 -1.1561 17 6 3.5260 -6.0611 -0.9051 18 6 4.5866 -7.1207 -0.7527 19 1 4.6596 -7.6835 0.1661 20 6 5.4637 -7.3719 -1.7864 21 7 5.3750 -6.6864 -2.9053 22 14 6.7779 -8.6859 -1.5979 23 1 6.2439 -9.9907 -2.0642 24 1 7.9655 -8.3184 -2.4101 25 1 7.1693 -8.7932 -0.1693 26 6 2.6921 -5.9837 0.3768 27 6 1.6557 -4.8662 0.2387 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1384 0.5139 33 1 4.3254 0.6893 -1.5587 34 1 4.7327 1.3907 -3.8833 35 1 1.0362 3.5258 -3.8832 36 1 0.6268 2.8132 -1.5624 37 1 0.7583 -2.5299 0.8903 38 1 0.7589 -2.5303 -0.8897 39 1 2.4411 -3.8491 -2.0811 40 1 3.5789 -2.6538 -1.4142 41 1 4.8656 -4.4718 -0.3335 42 1 4.7498 -4.7400 -2.0901 43 1 2.8791 -6.3115 -1.7459 44 1 5.9923 -6.8628 -3.6325 45 1 3.3451 -5.7716 1.2235 46 1 2.1833 -6.9340 0.5380 47 1 1.0697 -4.7990 1.1552 48 1 0.9946 -5.0859 -0.5997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541023119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:56 Heat of formation + Delta-G solvation = -67.148958 kcal Electronic energy + Delta-G solvation = -29000.941482 eV Core-core repulsion = 24969.374651 eV Total energy + Delta-G solvation = -4031.566831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.95915 -41.27426 -40.05055 -39.13560 -36.53854 -35.66596 -33.42308 -32.49122 -32.12973 -31.43354 -29.30456 -28.02659 -27.11564 -25.65167 -24.01740 -23.77005 -23.30932 -22.45452 -20.37336 -20.11305 -18.70330 -18.43426 -18.04271 -17.40788 -17.18158 -17.05955 -16.68882 -16.61793 -16.26175 -15.93052 -15.45674 -15.16017 -14.97640 -14.67547 -14.55842 -14.40804 -14.33953 -14.08355 -13.91163 -13.76013 -13.31693 -13.14026 -13.07564 -12.93632 -12.85897 -12.73958 -12.61592 -12.51772 -12.34713 -12.01532 -11.93395 -11.85984 -11.35541 -10.95013 -10.80281 -10.48642 -10.35050 -10.10295 -9.72226 -9.55403 -9.14644 -8.07954 -6.21514 0.03799 0.24199 1.39143 1.40705 1.50988 1.70931 2.00323 2.43306 2.66162 3.10245 3.18929 3.24521 3.63231 3.78075 3.78866 3.93689 4.16107 4.18014 4.26415 4.29109 4.30275 4.37713 4.42649 4.51371 4.57301 4.61788 4.70234 4.79158 4.87341 4.92208 4.94388 5.00026 5.02008 5.03748 5.11017 5.13246 5.23601 5.24318 5.33711 5.49636 5.56979 5.61116 5.64189 5.89011 5.98458 6.00774 6.18416 6.29946 6.40866 6.49251 6.90785 7.31583 7.46135 8.96626 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.002860 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.368521 B = 9789.260764 C =11382.137282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.612 5.612 3 C 0.157 3.843 4 C -0.118 4.118 5 C -0.085 4.085 6 C -0.172 4.172 7 C 0.079 3.921 8 F -0.151 7.151 9 C -0.153 4.153 10 C -0.065 4.065 11 C 0.508 3.492 12 O -0.559 6.559 13 C 0.039 3.961 14 N -0.535 5.535 15 C 0.075 3.925 16 C -0.089 4.089 17 C 0.045 3.955 18 C -0.532 4.532 19 H 0.052 0.948 20 C 0.009 3.991 21 N -0.919 5.919 22 Si 0.954 3.046 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.269 1.269 26 C -0.101 4.101 27 C 0.068 3.932 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.009 0.991 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.054 0.946 43 H -0.010 1.010 44 H 0.259 0.741 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.510 22.320 5.054 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.346 5.346 3 C 0.035 3.965 4 C -0.119 4.119 5 C -0.104 4.104 6 C -0.191 4.191 7 C 0.059 3.941 8 F -0.130 7.130 9 C -0.172 4.172 10 C -0.084 4.084 11 C 0.296 3.704 12 O -0.436 6.436 13 C -0.092 4.092 14 N -0.260 5.260 15 C -0.053 4.053 16 C -0.128 4.128 17 C 0.026 3.974 18 C -0.570 4.570 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.559 5.559 22 Si 0.780 3.220 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.193 1.193 26 C -0.139 4.139 27 C -0.059 4.059 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.008 0.992 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.118 0.882 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.471 22.411 5.245 27.732 hybrid contribution 1.051 -1.052 -1.538 2.139 sum -14.419 21.359 3.707 26.036 Atomic orbital electron populations 1.22149 0.76674 1.04795 1.03733 1.47987 1.08543 1.04493 1.73591 1.20409 0.98832 0.85626 0.91656 1.20503 0.94533 0.98776 0.98124 1.21103 0.98086 0.97547 0.93619 1.21279 1.00752 1.00706 0.96355 1.18033 0.97133 0.99319 0.79583 1.91471 1.94963 1.89484 1.37045 1.21454 0.96452 1.02823 0.96450 1.21276 0.99178 0.94899 0.93000 1.20967 0.87853 0.86254 0.75332 1.90683 1.15910 1.87419 1.49614 1.22107 0.94071 0.88472 1.04534 1.61589 1.25376 1.03292 1.35728 1.22002 0.95374 0.99368 0.88574 1.21342 0.96682 0.94805 0.99954 1.18665 0.93520 0.92539 0.92659 1.21611 1.15761 1.19437 1.00239 0.92951 1.25792 0.99720 0.98371 0.95065 1.70043 1.38644 1.41906 1.05336 0.85611 0.78715 0.79498 0.78175 1.19830 1.21097 1.19328 1.21550 0.97085 0.96880 0.98359 1.22106 0.94990 0.87954 1.00842 0.90183 0.88636 0.90643 0.85339 0.91051 0.86656 0.85340 0.82195 0.80857 0.84942 0.90958 0.97274 0.91638 0.96122 0.92766 0.99156 0.93223 0.93453 0.92101 0.88217 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.24 127.77 1.31 1.82 16 2 N -0.61 -10.55 2.86 -851.14 -2.43 -12.98 16 3 C 0.16 2.44 5.53 85.64 0.47 2.92 16 4 C -0.12 -2.12 5.46 -19.86 -0.11 -2.23 16 5 C -0.08 -2.09 9.70 22.26 0.22 -1.88 16 6 C -0.17 -4.24 10.03 22.31 0.22 -4.01 16 7 C 0.08 1.74 7.30 22.38 0.16 1.90 16 8 F -0.15 -3.65 17.27 44.97 0.78 -2.87 16 9 C -0.15 -2.36 10.03 22.31 0.22 -2.14 16 10 C -0.07 -0.81 9.70 22.26 0.22 -0.59 16 11 C 0.51 13.77 7.35 87.66 0.64 14.41 16 12 O -0.56 -20.87 13.45 -3.03 -0.04 -20.91 16 13 C 0.04 0.96 4.00 85.56 0.34 1.31 16 14 N -0.53 -19.22 4.40 -900.93 -3.96 -23.18 16 15 C 0.07 3.26 5.10 86.33 0.44 3.70 16 16 C -0.09 -4.74 5.12 30.65 0.16 -4.58 16 17 C 0.04 2.37 2.16 -11.46 -0.02 2.35 16 18 C -0.53 -30.94 8.56 25.60 0.22 -30.72 16 19 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 20 C 0.01 0.50 5.31 84.65 0.45 0.95 16 21 N -0.92 -56.02 11.37 21.45 0.24 -55.77 16 22 Si 0.95 45.73 29.54 68.60 2.03 47.75 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 C -0.10 -4.29 5.32 30.65 0.16 -4.13 16 27 C 0.07 2.29 5.46 86.33 0.47 2.76 16 28 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.10 0.27 8.07 -2.38 -0.02 0.25 16 30 H 0.07 0.58 6.44 -2.39 -0.02 0.56 16 31 H 0.13 0.90 8.02 -2.39 -0.02 0.88 16 32 H 0.07 1.49 7.36 -2.39 -0.02 1.48 16 33 H 0.12 3.39 7.60 -2.91 -0.02 3.37 16 34 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 37 H 0.13 2.34 7.95 -2.39 -0.02 2.32 16 38 H 0.07 1.60 7.38 -2.39 -0.02 1.58 16 39 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.07 2.98 5.78 -2.39 -0.01 2.96 16 41 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.05 3.23 6.17 -2.39 -0.01 3.22 16 43 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 44 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 45 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 47 H 0.10 2.57 8.01 -2.39 -0.02 2.55 16 48 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -77.37 386.60 3.14 -74.24 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.94 Total: 11.90 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.58 Total: -18.17 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -6.15 Total: -91.94 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.04 Total: -20.91 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.37 3.14 -74.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541023119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.087 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds