Wall clock time and date at job start Tue Mar 31 2020 18:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99937 * 2 1 4 4 C 1.53003 * 109.46962 * 90.00185 * 3 2 1 5 5 C 1.52998 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47193 * 180.02562 * 5 4 3 7 7 N 1.34324 * 126.23125 * 264.97887 * 6 5 4 8 8 H 0.96996 * 125.69008 * 0.02562 * 7 6 5 9 9 N 1.39922 * 108.62271 * 180.02562 * 7 6 5 10 10 C 1.30959 * 108.86129 * 359.97438 * 9 7 6 11 11 N 1.39585 * 126.06955 * 179.97438 * 10 9 7 12 12 C 1.38072 * 126.23458 * 85.28835 * 6 5 4 13 13 C 1.43197 * 126.44647 * 359.97438 * 12 6 5 14 14 N 5.97754 * 145.92575 * 63.97898 * 2 1 3 15 15 C 1.34781 * 120.00049 * 180.02562 * 2 1 3 16 16 O 1.21582 * 120.00106 * 180.02562 * 15 2 1 17 17 N 1.34775 * 119.99624 * 359.97438 * 15 2 1 18 18 C 1.46507 * 119.99928 * 179.97438 * 17 15 2 19 19 C 1.52999 * 109.47226 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.46940 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47050 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99897 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00294 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99616 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00258 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47104 * 60.00485 * 25 23 21 27 27 H 1.48503 * 109.47028 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47246 * 299.99978 * 25 23 21 29 29 H 1.09000 * 109.47538 * 90.00100 * 1 2 3 30 30 H 1.09007 * 109.47132 * 210.00258 * 1 2 3 31 31 H 1.08997 * 109.46980 * 329.99803 * 1 2 3 32 32 H 1.08997 * 109.47435 * 330.00266 * 3 2 1 33 33 H 1.09002 * 109.47239 * 209.99863 * 3 2 1 34 34 H 1.09010 * 109.46891 * 60.00122 * 4 3 2 35 35 H 1.09000 * 109.47371 * 300.00078 * 4 3 2 36 36 H 1.08997 * 109.47237 * 60.00211 * 5 4 3 37 37 H 1.09002 * 109.47450 * 299.99799 * 5 4 3 38 38 H 0.97005 * 119.99647 * 0.02718 * 11 10 9 39 39 H 0.96995 * 120.00214 * 179.75095 * 11 10 9 40 40 H 0.97004 * 120.00697 * 0.02562 * 17 15 2 41 41 H 1.08998 * 109.46923 * 300.00755 * 18 17 15 42 42 H 1.08999 * 109.46818 * 60.00326 * 18 17 15 43 43 H 1.09004 * 109.46598 * 299.99965 * 19 18 17 44 44 H 1.08999 * 109.47279 * 60.00212 * 19 18 17 45 45 H 1.08993 * 109.47124 * 299.99789 * 20 19 18 46 46 H 1.08999 * 109.47221 * 59.99859 * 20 19 18 47 47 H 0.97000 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2180 3.0350 1.4425 6 6 3.4698 3.4697 2.8634 7 7 2.7126 4.3162 3.5807 8 1 1.9049 4.7546 3.2704 9 7 3.2834 4.4602 4.8501 10 6 4.3632 3.7221 4.9149 11 7 5.2097 3.5993 6.0180 12 6 4.5240 3.0751 3.6630 13 6 5.5791 2.1784 3.2982 14 7 6.4163 1.4692 3.0095 15 6 2.1389 -1.1672 -0.0005 16 8 3.3547 -1.1672 -0.0001 17 7 1.4650 -2.3344 -0.0005 18 6 2.1975 -3.6032 -0.0017 19 6 1.2032 -4.7661 -0.0021 20 6 1.9682 -6.0911 -0.0026 21 6 0.9889 -7.2365 -0.0023 22 1 -0.0729 -7.0392 -0.0023 23 6 1.4484 -8.5365 -0.0033 24 7 2.7415 -8.7768 -0.0039 25 14 0.2345 -9.9563 -0.0023 26 1 -0.6206 -9.8773 -1.2138 27 1 0.9770 -11.2423 -0.0042 28 1 -0.6178 -9.8780 1.2112 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6084 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5138 34 1 3.0416 0.9506 1.9563 35 1 1.5001 1.8406 1.9564 36 1 2.6293 3.7949 0.9287 37 1 4.1705 2.9043 0.9288 38 1 5.0176 4.0881 6.8335 39 1 5.9877 3.0220 5.9704 40 1 0.4949 -2.3344 -0.0005 41 1 2.8235 -3.6605 -0.8921 42 1 2.8247 -3.6613 0.8878 43 1 0.5769 -4.7089 0.8883 44 1 0.5762 -4.7078 -0.8918 45 1 2.5947 -6.1485 -0.8926 46 1 2.5949 -6.1492 0.8873 47 1 3.0648 -9.6913 -0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541900907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:48 Heat of formation + Delta-G solvation = 57.496404 kcal Electronic energy + Delta-G solvation = -27197.407468 eV Core-core repulsion = 23223.458379 eV Total energy + Delta-G solvation = -3973.949090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82296 -40.10387 -36.71608 -36.54948 -35.47099 -35.20685 -34.09120 -33.18076 -31.26994 -30.57363 -30.21882 -27.58011 -26.99805 -25.66299 -23.42361 -22.59741 -21.96949 -21.55622 -20.61904 -19.64234 -18.92909 -17.97600 -16.99419 -16.70210 -16.39908 -16.13576 -16.05276 -15.86230 -15.50691 -15.15416 -14.57915 -14.49837 -14.29816 -13.85526 -13.67469 -13.34553 -13.26483 -13.19344 -12.99321 -12.78712 -12.52057 -12.36221 -12.18506 -12.01951 -11.78087 -11.66079 -11.62850 -11.16667 -10.98684 -10.87411 -10.69138 -10.60979 -10.05152 -9.84266 -9.42590 -9.19355 -9.12090 -8.94282 -8.54798 -8.52269 -8.35440 -6.00019 -4.03308 1.02333 2.03506 2.10674 2.58595 2.65977 3.19053 3.32701 3.33094 3.37532 3.39251 3.41422 3.88324 4.04009 4.21294 4.30356 4.45492 4.61338 4.65331 4.80883 4.84784 4.92973 5.08227 5.16122 5.26739 5.35404 5.35636 5.41148 5.51466 5.65026 5.76500 5.83268 5.87952 6.20391 6.34941 6.54827 6.55588 6.63956 6.77884 6.79133 6.95135 7.00098 7.03916 7.47837 7.58817 7.65384 7.78636 7.98761 8.05965 8.39460 8.73357 9.03155 9.60560 11.11203 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.001824 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.078191 B =15350.611826 C =16223.345291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.639 5.639 3 C 0.136 3.864 4 C -0.132 4.132 5 C -0.067 4.067 6 C 0.186 3.814 7 N -0.449 5.449 8 H 0.447 0.553 9 N -0.350 5.350 10 C 0.389 3.611 11 N -0.836 5.836 12 C -0.221 4.221 13 C 0.282 3.718 14 N -0.423 5.423 15 C 0.700 3.300 16 O -0.586 6.586 17 N -0.741 5.741 18 C 0.133 3.867 19 C -0.120 4.120 20 C 0.024 3.976 21 C -0.523 4.523 22 H 0.055 0.945 23 C 0.056 3.944 24 N -0.893 5.893 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.409 0.591 39 H 0.413 0.587 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 32.777 5.789 33.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.377 5.377 3 C 0.012 3.988 4 C -0.172 4.172 5 C -0.107 4.107 6 C 0.047 3.953 7 N -0.154 5.154 8 H 0.293 0.707 9 N -0.184 5.184 10 C 0.125 3.875 11 N -0.387 5.387 12 C -0.240 4.240 13 C -0.033 4.033 14 N -0.100 5.100 15 C 0.401 3.599 16 O -0.463 6.463 17 N -0.396 5.396 18 C 0.010 3.990 19 C -0.158 4.158 20 C -0.014 4.014 21 C -0.561 4.561 22 H 0.073 0.927 23 C -0.145 4.145 24 N -0.532 5.532 25 Si 0.722 3.278 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.238 0.762 39 H 0.244 0.756 40 H 0.228 0.772 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.754 32.311 5.930 32.966 hybrid contribution -1.237 -0.939 -0.028 1.553 sum -3.991 31.372 5.902 32.171 Atomic orbital electron populations 1.21708 0.79982 1.02953 1.01725 1.46998 1.06187 1.05016 1.79536 1.21223 0.98106 0.83885 0.95561 1.22001 1.00516 0.95774 0.98921 1.20454 1.03605 0.98229 0.88385 1.21306 0.89625 0.89890 0.94486 1.45545 1.23568 1.36726 1.09545 0.70737 1.77372 1.12809 1.29143 0.99040 1.18987 0.89862 0.91528 0.87119 1.41372 1.29362 1.55073 1.12918 1.15415 1.00179 1.12652 0.95777 1.24365 0.92390 0.92236 0.94334 1.81298 1.11205 1.10809 1.06641 1.15988 0.85440 0.80455 0.78034 1.90938 1.11501 1.86154 1.57754 1.45540 1.09828 1.05208 1.79059 1.21524 0.95153 0.80369 1.01927 1.21885 0.97848 0.95308 1.00733 1.19022 0.95474 0.89146 0.97716 1.21160 0.92926 0.90950 1.51081 0.92722 1.25038 0.95139 0.99023 0.95314 1.69961 1.12518 1.20314 1.50413 0.86636 0.81108 0.81559 0.78543 1.20273 1.21276 1.20264 0.92618 0.91348 0.91038 0.90499 0.89425 0.90368 0.91357 0.89086 0.88112 0.76162 0.75643 0.77171 0.91929 0.91962 0.92842 0.92800 0.96229 0.96242 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.20 59.85 0.61 1.14 16 2 N -0.64 -6.69 2.87 -187.35 -0.54 -7.23 16 3 C 0.14 1.09 5.41 -4.04 -0.02 1.07 16 4 C -0.13 -0.94 5.52 -26.73 -0.15 -1.09 16 5 C -0.07 -0.32 5.53 -27.88 -0.15 -0.48 16 6 C 0.19 1.21 6.54 -81.56 -0.53 0.67 16 7 N -0.45 -2.45 7.28 33.88 0.25 -2.20 16 8 H 0.45 0.88 8.96 -182.74 -1.64 -0.76 16 9 N -0.35 -2.88 12.66 31.58 0.40 -2.49 16 10 C 0.39 3.28 8.44 -154.62 -1.31 1.97 16 11 N -0.84 -4.96 9.13 31.55 0.29 -4.68 16 12 C -0.22 -2.00 5.98 -106.66 -0.64 -2.64 16 13 C 0.28 3.27 15.28 -22.52 -0.34 2.92 16 14 N -0.42 -6.09 18.53 41.78 0.77 -5.32 16 15 C 0.70 10.81 8.28 -86.92 -0.72 10.09 16 16 O -0.59 -11.62 15.92 5.29 0.08 -11.54 16 17 N -0.74 -11.06 5.42 -65.22 -0.35 -11.41 16 18 C 0.13 2.45 5.67 -4.04 -0.02 2.42 16 19 C -0.12 -2.37 5.27 -26.73 -0.14 -2.52 16 20 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 21 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 22 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 25 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.46 6.36 -51.92 -0.33 0.13 16 31 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.09 0.89 7.42 -51.93 -0.39 0.51 16 34 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 38 H 0.41 1.65 8.96 -40.82 -0.37 1.28 16 39 H 0.41 2.15 8.74 -40.82 -0.36 1.79 16 40 H 0.39 4.71 6.20 -40.82 -0.25 4.46 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 405.94 15.07 6.12 6.12 Total: -1.00 -38.47 405.94 -9.59 -48.06 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.35 Total: -0.15 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.97 Total: 0.57 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 1.55 Total: -59.65 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.47 -9.59 -48.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541900907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.559 kcal (2) G-P(sol) polarization free energy of solvation -38.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds