Wall clock time and date at job start Tue Mar 31 2020 18:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99937 * 2 1 4 4 C 1.53003 * 109.46962 * 90.00185 * 3 2 1 5 5 C 1.52998 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47193 * 180.02562 * 5 4 3 7 7 N 1.34324 * 126.23125 * 264.97887 * 6 5 4 8 8 H 0.96996 * 125.69008 * 0.02562 * 7 6 5 9 9 N 1.39922 * 108.62271 * 180.02562 * 7 6 5 10 10 C 1.30959 * 108.86129 * 359.97438 * 9 7 6 11 11 N 1.39585 * 126.06955 * 179.97438 * 10 9 7 12 12 C 1.38072 * 126.23458 * 85.28835 * 6 5 4 13 13 C 1.43197 * 126.44647 * 359.97438 * 12 6 5 14 14 N 5.97754 * 145.92575 * 63.97898 * 2 1 3 15 15 C 1.34781 * 120.00049 * 180.02562 * 2 1 3 16 16 O 1.21582 * 120.00106 * 180.02562 * 15 2 1 17 17 N 1.34775 * 119.99624 * 359.97438 * 15 2 1 18 18 C 1.46507 * 119.99928 * 179.97438 * 17 15 2 19 19 C 1.52999 * 109.47226 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.46940 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47050 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99897 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00294 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99616 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00258 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47104 * 60.00485 * 25 23 21 27 27 H 1.48503 * 109.47028 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47246 * 299.99978 * 25 23 21 29 29 H 1.09000 * 109.47538 * 90.00100 * 1 2 3 30 30 H 1.09007 * 109.47132 * 210.00258 * 1 2 3 31 31 H 1.08997 * 109.46980 * 329.99803 * 1 2 3 32 32 H 1.08997 * 109.47435 * 330.00266 * 3 2 1 33 33 H 1.09002 * 109.47239 * 209.99863 * 3 2 1 34 34 H 1.09010 * 109.46891 * 60.00122 * 4 3 2 35 35 H 1.09000 * 109.47371 * 300.00078 * 4 3 2 36 36 H 1.08997 * 109.47237 * 60.00211 * 5 4 3 37 37 H 1.09002 * 109.47450 * 299.99799 * 5 4 3 38 38 H 0.97005 * 119.99647 * 0.02718 * 11 10 9 39 39 H 0.96995 * 120.00214 * 179.75095 * 11 10 9 40 40 H 0.97004 * 120.00697 * 0.02562 * 17 15 2 41 41 H 1.08998 * 109.46923 * 300.00755 * 18 17 15 42 42 H 1.08999 * 109.46818 * 60.00326 * 18 17 15 43 43 H 1.09004 * 109.46598 * 299.99965 * 19 18 17 44 44 H 1.08999 * 109.47279 * 60.00212 * 19 18 17 45 45 H 1.08993 * 109.47124 * 299.99789 * 20 19 18 46 46 H 1.08999 * 109.47221 * 59.99859 * 20 19 18 47 47 H 0.97000 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2180 3.0350 1.4425 6 6 3.4698 3.4697 2.8634 7 7 2.7126 4.3162 3.5807 8 1 1.9049 4.7546 3.2704 9 7 3.2834 4.4602 4.8501 10 6 4.3632 3.7221 4.9149 11 7 5.2097 3.5993 6.0180 12 6 4.5240 3.0751 3.6630 13 6 5.5791 2.1784 3.2982 14 7 6.4163 1.4692 3.0095 15 6 2.1389 -1.1672 -0.0005 16 8 3.3547 -1.1672 -0.0001 17 7 1.4650 -2.3344 -0.0005 18 6 2.1975 -3.6032 -0.0017 19 6 1.2032 -4.7661 -0.0021 20 6 1.9682 -6.0911 -0.0026 21 6 0.9889 -7.2365 -0.0023 22 1 -0.0729 -7.0392 -0.0023 23 6 1.4484 -8.5365 -0.0033 24 7 2.7415 -8.7768 -0.0039 25 14 0.2345 -9.9563 -0.0023 26 1 -0.6206 -9.8773 -1.2138 27 1 0.9770 -11.2423 -0.0042 28 1 -0.6178 -9.8780 1.2112 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6084 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5138 34 1 3.0416 0.9506 1.9563 35 1 1.5001 1.8406 1.9564 36 1 2.6293 3.7949 0.9287 37 1 4.1705 2.9043 0.9288 38 1 5.0176 4.0881 6.8335 39 1 5.9877 3.0220 5.9704 40 1 0.4949 -2.3344 -0.0005 41 1 2.8235 -3.6605 -0.8921 42 1 2.8247 -3.6613 0.8878 43 1 0.5769 -4.7089 0.8883 44 1 0.5762 -4.7078 -0.8918 45 1 2.5947 -6.1485 -0.8926 46 1 2.5949 -6.1492 0.8873 47 1 3.0648 -9.6913 -0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541900907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:47 Heat of formation + Delta-G solvation = 29.002618 kcal Electronic energy + Delta-G solvation = -27198.643052 eV Core-core repulsion = 23223.458379 eV Total energy + Delta-G solvation = -3975.184673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.39729 -41.21918 -37.64662 -37.50187 -36.75818 -36.03792 -35.28948 -34.55556 -32.91547 -31.29611 -30.88236 -28.70909 -28.10137 -26.70048 -24.89703 -23.58895 -22.67613 -22.31413 -22.10490 -20.79590 -19.56282 -19.02000 -18.47864 -17.63084 -17.43071 -17.01325 -16.88946 -16.62834 -16.48272 -16.26938 -15.83941 -15.80742 -15.37284 -14.97951 -14.56615 -14.30403 -14.26138 -14.24224 -14.03130 -13.76433 -13.60199 -13.46445 -13.42124 -13.13684 -12.84449 -12.71766 -12.57205 -12.52495 -12.39173 -12.14087 -11.78057 -11.68137 -11.60491 -11.55738 -11.29236 -11.11584 -10.55192 -10.22543 -9.82681 -9.46256 -9.09940 -8.19278 -6.31381 0.41969 1.36216 1.41320 1.45006 1.52781 1.62483 1.70049 1.72200 2.13805 2.41916 2.56646 2.66659 3.04055 3.14109 3.23324 3.66373 3.83616 4.02732 4.10706 4.14876 4.20609 4.26594 4.34230 4.41712 4.53768 4.56810 4.70469 4.72427 4.87739 4.92276 4.93873 4.96039 4.98087 5.13610 5.16422 5.27754 5.46434 5.53707 5.64705 5.69473 5.83332 5.93602 6.08998 6.21601 6.31261 6.50698 6.63678 6.85593 6.99277 7.07247 7.38144 7.57613 8.92754 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.001824 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.078191 B =15350.611826 C =16223.345291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.630 5.630 3 C 0.130 3.870 4 C -0.123 4.123 5 C -0.062 4.062 6 C 0.207 3.793 7 N -0.427 5.427 8 H 0.465 0.535 9 N -0.367 5.367 10 C 0.383 3.617 11 N -0.830 5.830 12 C -0.258 4.258 13 C 0.308 3.692 14 N -0.488 5.488 15 C 0.691 3.309 16 O -0.640 6.640 17 N -0.731 5.731 18 C 0.149 3.851 19 C -0.098 4.098 20 C 0.023 3.977 21 C -0.541 4.541 22 H 0.069 0.931 23 C -0.006 4.006 24 N -0.936 5.936 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.415 0.585 40 H 0.411 0.589 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.070 0.930 45 H -0.009 1.009 46 H -0.011 1.011 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 35.101 5.519 36.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.366 5.366 3 C 0.007 3.993 4 C -0.163 4.163 5 C -0.101 4.101 6 C 0.066 3.934 7 N -0.133 5.133 8 H 0.315 0.685 9 N -0.201 5.201 10 C 0.119 3.881 11 N -0.382 5.382 12 C -0.277 4.277 13 C -0.006 4.006 14 N -0.167 5.167 15 C 0.392 3.608 16 O -0.522 6.522 17 N -0.389 5.389 18 C 0.024 3.976 19 C -0.136 4.136 20 C -0.015 4.015 21 C -0.579 4.579 22 H 0.087 0.913 23 C -0.204 4.204 24 N -0.576 5.576 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.213 1.213 28 H -0.189 1.189 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.107 0.893 38 H 0.249 0.751 39 H 0.246 0.754 40 H 0.249 0.751 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.010 0.990 46 H 0.008 0.992 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.057 34.718 5.680 35.881 hybrid contribution 0.025 -1.543 0.066 1.544 sum -7.031 33.176 5.746 34.396 Atomic orbital electron populations 1.22041 0.77019 1.04745 1.03267 1.47107 1.08000 1.03916 1.77616 1.21492 0.97678 0.83796 0.96285 1.21867 1.01023 0.95376 0.97991 1.20519 1.03715 0.98393 0.87490 1.21435 0.88483 0.88744 0.94751 1.45559 1.23573 1.35703 1.08470 0.68538 1.77343 1.12903 1.29531 1.00362 1.19170 0.90184 0.91390 0.87353 1.41429 1.29033 1.54899 1.12843 1.15644 1.01020 1.13881 0.97175 1.24748 0.91838 0.91324 0.92668 1.81302 1.13415 1.13185 1.08753 1.16276 0.84954 0.81726 0.77863 1.90905 1.14134 1.87094 1.60069 1.45180 1.10473 1.04025 1.79202 1.21043 0.94624 0.81837 1.00080 1.21575 0.97398 0.92503 1.02156 1.18942 0.95205 0.92362 0.94948 1.21645 0.93886 0.91774 1.50558 0.91302 1.26081 0.97093 1.02419 0.94782 1.70124 1.14893 1.21011 1.51609 0.85425 0.78511 0.77314 0.79333 1.18863 1.21272 1.18936 0.91137 0.91466 0.87437 0.85396 0.92407 0.95336 0.88942 0.84007 0.89331 0.75098 0.75422 0.75114 0.93754 0.94163 0.91353 0.91127 0.99039 0.99240 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.20 127.77 1.30 1.96 16 2 N -0.63 -11.89 2.87 -864.92 -2.49 -14.37 16 3 C 0.13 1.77 5.41 86.38 0.47 2.24 16 4 C -0.12 -1.50 5.52 30.59 0.17 -1.33 16 5 C -0.06 -0.43 5.53 29.85 0.17 -0.26 16 6 C 0.21 2.27 6.54 42.14 0.28 2.55 16 7 N -0.43 -3.36 7.28 -46.74 -0.34 -3.70 16 8 H 0.46 -0.13 8.96 -213.44 -1.91 -2.05 16 9 N -0.37 -5.37 12.66 -54.00 -0.68 -6.05 16 10 C 0.38 6.19 8.44 133.96 1.13 7.32 16 11 N -0.83 -9.72 9.13 -54.09 -0.49 -10.21 16 12 C -0.26 -4.60 5.98 -21.18 -0.13 -4.73 16 13 C 0.31 7.61 15.28 88.35 1.35 8.96 16 14 N -0.49 -15.33 18.53 18.98 0.35 -14.98 16 15 C 0.69 21.43 8.28 179.05 1.48 22.92 16 16 O -0.64 -26.78 15.92 -3.97 -0.06 -26.85 16 17 N -0.73 -21.56 5.42 -478.53 -2.59 -24.15 16 18 C 0.15 5.65 5.67 86.38 0.49 6.15 16 19 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 20 C 0.02 1.24 4.97 29.85 0.15 1.39 16 21 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 22 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 23 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 24 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 25 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 26 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.66 6.36 -2.38 -0.02 0.65 16 31 H 0.11 0.28 8.07 -2.39 -0.02 0.26 16 32 H 0.13 0.49 8.07 -2.39 -0.02 0.47 16 33 H 0.06 1.17 7.42 -2.39 -0.02 1.15 16 34 H 0.03 0.64 8.14 -2.38 -0.02 0.63 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.14 -0.40 8.14 -2.39 -0.02 -0.41 16 37 H 0.09 0.92 8.05 -2.39 -0.02 0.90 16 38 H 0.42 3.15 8.96 -92.70 -0.83 2.32 16 39 H 0.42 4.53 8.74 -92.71 -0.81 3.72 16 40 H 0.41 9.04 6.20 -92.71 -0.58 8.47 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -90.34 405.94 0.63 -89.71 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.09 Total: 9.19 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 7.71 Total: 13.22 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -5.96 Total: -131.45 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.06 Total: -26.85 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -90.34 0.63 -89.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541900907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.715 kcal (2) G-P(sol) polarization free energy of solvation -90.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds