Wall clock time and date at job start Tue Mar 31 2020 17:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47096 * 2 1 4 4 C 1.50699 * 109.46849 * 240.00456 * 2 1 3 5 5 O 1.21281 * 119.99893 * 267.15872 * 4 2 1 6 6 N 1.34782 * 120.00163 * 87.16081 * 4 2 1 7 7 C 1.46501 * 119.99748 * 180.02562 * 6 4 2 8 8 C 1.50702 * 109.46838 * 179.97438 * 7 6 4 9 9 C 1.38243 * 119.97674 * 269.72727 * 8 7 6 10 10 C 1.38202 * 120.02773 * 179.72834 * 9 8 7 11 11 C 1.38453 * 119.97148 * 0.56473 * 10 9 8 12 12 F 1.35103 * 120.02723 * 179.68648 * 11 10 9 13 13 C 1.38464 * 119.95085 * 359.70515 * 11 10 9 14 14 C 1.38200 * 119.97255 * 0.02562 * 13 11 10 15 15 N 1.46895 * 109.47318 * 120.00086 * 2 1 3 16 16 C 1.46846 * 110.99917 * 183.09141 * 15 2 1 17 17 C 1.53037 * 109.52259 * 185.83946 * 16 15 2 18 18 C 1.53122 * 109.28064 * 300.82364 * 17 16 15 19 19 C 1.50703 * 109.52275 * 177.55689 * 18 17 16 20 20 H 1.08006 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99977 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00350 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46895 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47110 * 119.99963 * 23 21 19 26 26 H 1.48498 * 109.47309 * 240.00553 * 23 21 19 27 27 C 1.53115 * 109.15724 * 57.65230 * 18 17 16 28 28 C 1.46840 * 111.00300 * 307.30281 * 15 2 1 29 29 H 1.08997 * 109.47531 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46756 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47433 * 59.99349 * 1 2 3 32 32 H 0.97000 * 119.99843 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46977 * 299.99330 * 7 6 4 34 34 H 1.09000 * 109.47082 * 59.99772 * 7 6 4 35 35 H 1.08006 * 119.98372 * 359.97248 * 9 8 7 36 36 H 1.07997 * 120.00863 * 180.25343 * 10 9 8 37 37 H 1.07998 * 120.01322 * 179.97438 * 13 11 10 38 38 H 1.07997 * 119.98584 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.46359 * 65.82671 * 16 15 2 40 40 H 1.09000 * 109.45388 * 305.85280 * 16 15 2 41 41 H 1.08997 * 109.50613 * 180.87782 * 17 16 15 42 42 H 1.09007 * 109.50316 * 60.76481 * 17 16 15 43 43 H 1.08994 * 109.52174 * 297.74783 * 18 17 16 44 44 H 0.96994 * 120.00333 * 180.02562 * 22 21 19 45 45 H 1.09005 * 109.50534 * 62.28964 * 27 18 17 46 46 H 1.09007 * 109.50406 * 182.40224 * 27 18 17 47 47 H 1.09001 * 109.46561 * 294.17608 * 28 15 2 48 48 H 1.09004 * 109.46299 * 54.14584 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.2834 -1.8960 -1.1862 6 7 2.2024 -0.0280 -2.3803 7 6 2.6901 -0.7187 -3.5767 8 6 2.7907 0.2617 -4.7168 9 6 1.7109 0.4562 -5.5578 10 6 1.8001 1.3592 -6.6003 11 6 2.9755 2.0604 -6.8092 12 9 3.0660 2.9387 -7.8318 13 6 4.0582 1.8607 -5.9696 14 6 3.9648 0.9614 -4.9245 15 7 2.0197 -0.6925 1.1994 16 6 3.4858 -0.6483 1.2708 17 6 3.9663 -1.4997 2.4482 18 6 3.3569 -0.9592 3.7448 19 6 3.7785 -1.8297 4.9005 20 1 4.4176 -2.6832 4.7287 21 6 3.3492 -1.5358 6.1773 22 7 2.5714 -0.4962 6.3867 23 14 3.8723 -2.6143 7.6100 24 1 4.7412 -3.7111 7.1125 25 1 4.6235 -1.7971 8.5964 26 1 2.6686 -3.1921 8.2600 27 6 1.8305 -0.9707 3.6257 28 6 1.4119 -0.1347 2.4142 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.0011 0.9203 -2.4159 33 1 3.6732 -1.1442 -3.3751 34 1 1.9968 -1.5162 -3.8438 35 1 0.7959 -0.0948 -5.3977 36 1 0.9550 1.5139 -7.2546 37 1 4.9757 2.4069 -6.1320 38 1 4.8091 0.8057 -4.2692 39 1 3.8117 0.3823 1.4110 40 1 3.9063 -1.0394 0.3443 41 1 5.0535 -1.4542 2.5104 42 1 3.6526 -2.5333 2.3019 43 1 3.7016 0.0613 3.9115 44 1 2.2697 -0.2892 7.2849 45 1 1.4831 -1.9960 3.4979 46 1 1.3917 -0.5473 4.5292 47 1 1.7475 0.8935 2.5490 48 1 0.3262 -0.1527 2.3182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542882309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:12 Heat of formation + Delta-G solvation = -58.007341 kcal Electronic energy + Delta-G solvation = -28268.271089 eV Core-core repulsion = 24237.100669 eV Total energy + Delta-G solvation = -4031.170421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.34317 -40.26424 -39.44505 -37.79199 -34.97827 -34.33769 -32.19576 -31.65373 -31.28900 -29.84465 -29.35306 -26.52855 -25.58106 -23.72305 -23.56429 -22.03096 -21.87372 -21.23555 -19.98066 -18.60866 -18.16413 -17.19095 -16.89548 -16.66690 -16.26432 -16.02250 -15.60054 -15.22791 -15.04950 -14.48548 -14.41669 -14.20397 -14.00982 -13.92163 -13.61940 -13.24074 -12.89075 -12.71841 -12.67200 -12.57924 -12.43884 -12.06827 -11.98941 -11.79357 -11.51005 -11.37774 -11.13663 -10.90844 -10.72352 -10.37783 -10.16402 -9.97381 -9.74375 -9.62721 -9.36337 -9.20452 -9.08945 -8.86465 -8.64571 -8.25501 -7.73617 -5.93666 -3.98046 0.53778 0.72098 2.72821 2.84543 3.33278 3.34498 3.41254 3.46195 3.76704 4.18197 4.20938 4.34134 4.40721 4.49229 4.73454 4.74842 4.79331 5.15018 5.17502 5.23471 5.36297 5.36829 5.42279 5.53665 5.54913 5.61544 5.69987 5.75106 5.85654 5.92479 6.01421 6.08081 6.16360 6.22650 6.26772 6.36273 6.38000 6.63339 6.68511 6.92992 7.11725 7.20291 7.34006 7.49425 7.64483 7.69294 7.86520 8.10044 8.19013 8.30945 8.53601 9.05725 9.66057 11.12709 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.001968 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.598590 B =14222.744809 C =14500.654302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 H 0.051 0.949 4 C 0.519 3.481 5 O -0.510 6.510 6 N -0.736 5.736 7 C 0.163 3.837 8 C -0.116 4.116 9 C -0.071 4.071 10 C -0.156 4.156 11 C 0.103 3.897 12 F -0.140 7.140 13 C -0.155 4.155 14 C -0.070 4.070 15 N -0.513 5.513 16 C 0.061 3.939 17 C -0.104 4.104 18 C 0.047 3.953 19 C -0.506 4.506 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.285 1.285 27 C -0.103 4.103 28 C 0.055 3.945 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.258 0.742 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.023 0.977 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 7.179 -25.680 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 H 0.069 0.931 4 C 0.305 3.695 5 O -0.383 6.383 6 N -0.391 5.391 7 C 0.040 3.960 8 C -0.117 4.117 9 C -0.090 4.090 10 C -0.175 4.175 11 C 0.084 3.916 12 F -0.118 7.118 13 C -0.174 4.174 14 C -0.089 4.089 15 N -0.239 5.239 16 C -0.066 4.066 17 C -0.141 4.141 18 C 0.029 3.971 19 C -0.545 4.545 20 H 0.073 0.927 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.142 4.142 28 C -0.072 4.072 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.233 0.767 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.041 0.959 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.039 5.899 -25.550 26.397 hybrid contribution 0.462 1.062 0.524 1.272 sum -2.577 6.961 -25.025 26.103 Atomic orbital electron populations 1.21840 0.92256 1.03608 1.02271 1.21534 0.97092 0.95519 0.90474 0.93120 1.20726 0.77144 0.87772 0.83869 1.90722 1.48244 1.15199 1.84123 1.46150 1.69597 1.13199 1.10142 1.20117 1.01088 0.92876 0.81961 1.20007 0.94383 0.99383 0.97880 1.21009 0.98491 0.96334 0.93130 1.21179 0.97365 0.98464 1.00457 1.17808 0.95495 0.91142 0.87198 1.91517 1.96738 1.66619 1.56943 1.21197 0.98680 1.01197 0.96313 1.21037 0.97714 0.93927 0.96226 1.61825 1.07368 1.54276 1.00397 1.22149 0.86523 0.98095 0.99866 1.21643 0.98584 0.99202 0.94708 1.18700 0.91629 0.96112 0.90695 1.21260 1.29623 1.11912 0.91687 0.92684 1.24968 0.95194 0.95217 0.98739 1.69881 1.35152 1.27159 1.21096 0.86576 0.78372 0.80671 0.82615 1.19832 1.21214 1.21103 1.21667 0.99715 0.98030 0.94761 1.22412 0.97917 0.96689 0.90144 0.90988 0.90740 0.92368 0.76711 0.90431 0.90466 0.84623 0.84507 0.84465 0.84562 0.96143 0.92276 0.93280 0.92246 0.96214 0.93226 0.93642 0.88825 0.95908 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.71 37.16 0.32 -1.37 16 2 C 0.07 0.93 2.47 -68.87 -0.17 0.76 16 3 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.52 7.23 5.95 -10.98 -0.07 7.17 16 5 O -0.51 -9.30 15.80 5.56 0.09 -9.21 16 6 N -0.74 -7.11 5.55 -61.47 -0.34 -7.45 16 7 C 0.16 1.39 5.80 -5.19 -0.03 1.36 16 8 C -0.12 -0.80 5.25 -104.62 -0.55 -1.35 16 9 C -0.07 -0.44 9.70 -39.59 -0.38 -0.82 16 10 C -0.16 -1.00 10.03 -39.52 -0.40 -1.40 16 11 C 0.10 0.78 7.30 -39.42 -0.29 0.49 16 12 F -0.14 -1.20 17.27 2.25 0.04 -1.17 16 13 C -0.16 -1.04 10.03 -39.51 -0.40 -1.44 16 14 C -0.07 -0.46 9.70 -39.59 -0.38 -0.85 16 15 N -0.51 -9.40 4.22 -228.09 -0.96 -10.36 16 16 C 0.06 1.17 5.19 -3.83 -0.02 1.15 16 17 C -0.10 -2.29 5.32 -26.65 -0.14 -2.44 16 18 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 19 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 20 H 0.05 1.54 7.75 -52.48 -0.41 1.13 16 21 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 22 N -0.89 -25.48 11.37 55.43 0.63 -24.85 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 27 C -0.10 -2.46 5.12 -26.65 -0.14 -2.59 16 28 C 0.06 1.06 5.06 -3.84 -0.02 1.04 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.87 6.19 -51.92 -0.32 0.55 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.40 2.97 8.46 -40.82 -0.35 2.62 16 33 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 36 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 1.10 6.49 -51.93 -0.34 0.76 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 45 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.09 2.44 6.18 -51.93 -0.32 2.12 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 1.09 5.85 -51.93 -0.30 0.79 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -31.91 387.62 -10.48 -42.38 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.51 Total: 0.43 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.24 Total: -12.16 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.67 Total: -42.66 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.91 -10.48 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542882309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.625 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds