Wall clock time and date at job start Tue Mar 31 2020 17:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47096 * 2 1 4 4 C 1.50699 * 109.46849 * 240.00456 * 2 1 3 5 5 O 1.21281 * 119.99893 * 267.15872 * 4 2 1 6 6 N 1.34782 * 120.00163 * 87.16081 * 4 2 1 7 7 C 1.46501 * 119.99748 * 180.02562 * 6 4 2 8 8 C 1.50702 * 109.46838 * 179.97438 * 7 6 4 9 9 C 1.38243 * 119.97674 * 269.72727 * 8 7 6 10 10 C 1.38202 * 120.02773 * 179.72834 * 9 8 7 11 11 C 1.38453 * 119.97148 * 0.56473 * 10 9 8 12 12 F 1.35103 * 120.02723 * 179.68648 * 11 10 9 13 13 C 1.38464 * 119.95085 * 359.70515 * 11 10 9 14 14 C 1.38200 * 119.97255 * 0.02562 * 13 11 10 15 15 N 1.46895 * 109.47318 * 120.00086 * 2 1 3 16 16 C 1.46846 * 110.99917 * 183.09141 * 15 2 1 17 17 C 1.53037 * 109.52259 * 185.83946 * 16 15 2 18 18 C 1.53122 * 109.28064 * 300.82364 * 17 16 15 19 19 C 1.50703 * 109.52275 * 177.55689 * 18 17 16 20 20 H 1.08006 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99977 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00350 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46895 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47110 * 119.99963 * 23 21 19 26 26 H 1.48498 * 109.47309 * 240.00553 * 23 21 19 27 27 C 1.53115 * 109.15724 * 57.65230 * 18 17 16 28 28 C 1.46840 * 111.00300 * 307.30281 * 15 2 1 29 29 H 1.08997 * 109.47531 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46756 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47433 * 59.99349 * 1 2 3 32 32 H 0.97000 * 119.99843 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46977 * 299.99330 * 7 6 4 34 34 H 1.09000 * 109.47082 * 59.99772 * 7 6 4 35 35 H 1.08006 * 119.98372 * 359.97248 * 9 8 7 36 36 H 1.07997 * 120.00863 * 180.25343 * 10 9 8 37 37 H 1.07998 * 120.01322 * 179.97438 * 13 11 10 38 38 H 1.07997 * 119.98584 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.46359 * 65.82671 * 16 15 2 40 40 H 1.09000 * 109.45388 * 305.85280 * 16 15 2 41 41 H 1.08997 * 109.50613 * 180.87782 * 17 16 15 42 42 H 1.09007 * 109.50316 * 60.76481 * 17 16 15 43 43 H 1.08994 * 109.52174 * 297.74783 * 18 17 16 44 44 H 0.96994 * 120.00333 * 180.02562 * 22 21 19 45 45 H 1.09005 * 109.50534 * 62.28964 * 27 18 17 46 46 H 1.09007 * 109.50406 * 182.40224 * 27 18 17 47 47 H 1.09001 * 109.46561 * 294.17608 * 28 15 2 48 48 H 1.09004 * 109.46299 * 54.14584 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.2834 -1.8960 -1.1862 6 7 2.2024 -0.0280 -2.3803 7 6 2.6901 -0.7187 -3.5767 8 6 2.7907 0.2617 -4.7168 9 6 1.7109 0.4562 -5.5578 10 6 1.8001 1.3592 -6.6003 11 6 2.9755 2.0604 -6.8092 12 9 3.0660 2.9387 -7.8318 13 6 4.0582 1.8607 -5.9696 14 6 3.9648 0.9614 -4.9245 15 7 2.0197 -0.6925 1.1994 16 6 3.4858 -0.6483 1.2708 17 6 3.9663 -1.4997 2.4482 18 6 3.3569 -0.9592 3.7448 19 6 3.7785 -1.8297 4.9005 20 1 4.4176 -2.6832 4.7287 21 6 3.3492 -1.5358 6.1773 22 7 2.5714 -0.4962 6.3867 23 14 3.8723 -2.6143 7.6100 24 1 4.7412 -3.7111 7.1125 25 1 4.6235 -1.7971 8.5964 26 1 2.6686 -3.1921 8.2600 27 6 1.8305 -0.9707 3.6257 28 6 1.4119 -0.1347 2.4142 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.0011 0.9203 -2.4159 33 1 3.6732 -1.1442 -3.3751 34 1 1.9968 -1.5162 -3.8438 35 1 0.7959 -0.0948 -5.3977 36 1 0.9550 1.5139 -7.2546 37 1 4.9757 2.4069 -6.1320 38 1 4.8091 0.8057 -4.2692 39 1 3.8117 0.3823 1.4110 40 1 3.9063 -1.0394 0.3443 41 1 5.0535 -1.4542 2.5104 42 1 3.6526 -2.5333 2.3019 43 1 3.7016 0.0613 3.9115 44 1 2.2697 -0.2892 7.2849 45 1 1.4831 -1.9960 3.4979 46 1 1.3917 -0.5473 4.5292 47 1 1.7475 0.8935 2.5490 48 1 0.3262 -0.1527 2.3182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542882309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:11 Heat of formation + Delta-G solvation = -77.434045 kcal Electronic energy + Delta-G solvation = -28269.113494 eV Core-core repulsion = 24237.100669 eV Total energy + Delta-G solvation = -4032.012826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.93199 -41.29014 -40.17933 -39.20536 -36.08102 -35.81412 -33.92377 -32.14886 -32.13195 -31.54552 -30.76012 -27.46519 -27.24294 -25.01913 -24.04704 -23.70871 -22.92415 -22.32673 -21.08128 -20.37663 -18.71411 -18.47335 -18.18067 -17.64694 -17.45726 -16.71428 -16.59847 -16.37791 -16.15156 -16.03376 -15.43873 -15.17391 -14.92202 -14.76211 -14.56564 -14.45307 -14.37187 -14.35409 -14.08578 -13.51227 -13.45097 -13.27966 -13.16172 -12.86459 -12.64811 -12.59933 -12.54820 -12.51420 -12.15336 -12.00638 -11.97867 -11.87612 -11.38183 -10.94725 -10.70371 -10.57184 -10.36142 -10.13030 -10.06387 -9.67368 -9.14653 -8.07284 -6.19592 -0.00408 0.24788 1.39869 1.41943 1.53420 1.65691 2.07899 2.44647 2.66506 3.04023 3.19431 3.25313 3.59703 3.73246 3.81764 3.95610 4.08621 4.13850 4.16645 4.19250 4.29845 4.31174 4.44419 4.55672 4.62651 4.69511 4.72914 4.77983 4.83534 4.92451 4.96476 4.96672 4.97135 5.12070 5.13647 5.20465 5.21325 5.27243 5.35299 5.41879 5.49425 5.56754 5.64031 5.86329 6.00288 6.02166 6.21867 6.30016 6.43177 6.60923 6.90440 7.31257 7.47407 8.97514 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.001968 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.598590 B =14222.744809 C =14500.654302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.062 3.938 3 H 0.076 0.924 4 C 0.522 3.478 5 O -0.560 6.560 6 N -0.715 5.715 7 C 0.166 3.834 8 C -0.116 4.116 9 C -0.068 4.068 10 C -0.156 4.156 11 C 0.086 3.914 12 F -0.149 7.149 13 C -0.159 4.159 14 C -0.072 4.072 15 N -0.531 5.531 16 C 0.073 3.927 17 C -0.097 4.097 18 C 0.046 3.954 19 C -0.533 4.533 20 H 0.046 0.954 21 C 0.013 3.987 22 N -0.914 5.914 23 Si 0.952 3.048 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.096 4.096 28 C 0.068 3.932 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.413 0.587 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.041 0.959 43 H -0.006 1.006 44 H 0.261 0.739 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 8.099 -27.088 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 H 0.094 0.906 4 C 0.308 3.692 5 O -0.437 6.437 6 N -0.369 5.369 7 C 0.043 3.957 8 C -0.117 4.117 9 C -0.086 4.086 10 C -0.175 4.175 11 C 0.067 3.933 12 F -0.128 7.128 13 C -0.177 4.177 14 C -0.091 4.091 15 N -0.257 5.257 16 C -0.055 4.055 17 C -0.135 4.135 18 C 0.027 3.973 19 C -0.571 4.571 20 H 0.064 0.936 21 C -0.185 4.185 22 N -0.554 5.554 23 Si 0.778 3.222 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.134 4.134 28 C -0.059 4.059 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.250 0.750 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.012 0.988 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.043 0.957 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.672 6.865 -26.998 28.098 hybrid contribution 0.668 0.800 0.899 1.376 sum -3.004 7.665 -26.099 27.366 Atomic orbital electron populations 1.21845 0.90426 1.03073 1.04209 1.21697 0.98558 0.96144 0.88533 0.90602 1.20685 0.76689 0.87103 0.84722 1.90712 1.50758 1.17231 1.84966 1.45963 1.67861 1.13739 1.09327 1.20113 1.00548 0.93230 0.81843 1.19865 0.94928 0.99294 0.97586 1.21172 0.98835 0.96045 0.92594 1.21369 0.97483 0.98024 1.00617 1.18076 0.96339 0.91535 0.87363 1.91492 1.96834 1.67046 1.57435 1.21348 0.99019 1.01248 0.96114 1.21155 0.97950 0.93682 0.96300 1.61673 1.06663 1.55806 1.01543 1.21949 0.87460 0.97694 0.98406 1.21502 0.98587 0.98628 0.94793 1.18654 0.92872 0.94209 0.91535 1.21587 1.30043 1.12262 0.93243 0.93607 1.25699 0.95190 0.96486 1.01125 1.69995 1.35540 1.28158 1.21728 0.85597 0.78111 0.79034 0.79452 1.19633 1.20460 1.20515 1.21428 0.98384 0.97464 0.96125 1.22168 0.99317 0.95506 0.88874 0.92731 0.90427 0.88827 0.74998 0.91233 0.90569 0.83025 0.83029 0.83388 0.83682 0.95315 0.91545 0.93124 0.94043 0.98781 0.93009 0.95636 0.91476 0.95678 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.71 71.98 0.63 -2.25 16 2 C 0.06 1.60 2.47 44.17 0.11 1.71 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.52 13.51 5.95 87.66 0.52 14.03 16 5 O -0.56 -19.98 15.80 -3.03 -0.05 -20.03 16 6 N -0.71 -11.91 5.55 -466.77 -2.59 -14.50 16 7 C 0.17 2.51 5.80 85.63 0.50 3.00 16 8 C -0.12 -1.33 5.25 -19.86 -0.10 -1.43 16 9 C -0.07 -0.66 9.70 22.26 0.22 -0.45 16 10 C -0.16 -1.67 10.03 22.31 0.22 -1.44 16 11 C 0.09 1.16 7.30 22.37 0.16 1.33 16 12 F -0.15 -2.41 17.27 44.97 0.78 -1.64 16 13 C -0.16 -1.86 10.03 22.31 0.22 -1.64 16 14 C -0.07 -0.80 9.70 22.26 0.22 -0.59 16 15 N -0.53 -18.91 4.22 -875.54 -3.69 -22.60 16 16 C 0.07 2.73 5.19 86.33 0.45 3.18 16 17 C -0.10 -4.40 5.32 30.65 0.16 -4.24 16 18 C 0.05 2.39 2.16 -11.46 -0.02 2.36 16 19 C -0.53 -30.63 8.56 25.60 0.22 -30.41 16 20 H 0.05 2.64 7.75 -2.91 -0.02 2.61 16 21 C 0.01 0.76 5.31 84.65 0.45 1.21 16 22 N -0.91 -53.04 11.37 21.45 0.24 -52.80 16 23 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C -0.10 -4.65 5.12 30.64 0.16 -4.50 16 28 C 0.07 2.58 5.06 86.33 0.44 3.02 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.58 6.19 -2.38 -0.01 1.56 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.41 4.66 8.46 -92.71 -0.78 3.88 16 33 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 34 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 35 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 2.42 6.49 -2.39 -0.02 2.40 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 43 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.07 3.61 6.18 -2.38 -0.01 3.59 16 47 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.09 2.87 5.85 -2.38 -0.01 2.86 16 Total: -1.00 -70.69 387.62 1.43 -69.25 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.18 Total: 12.64 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.54 Total: -17.10 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -6.04 Total: -89.90 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -70.69 1.43 -69.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542882309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.181 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds