Wall clock time and date at job start Tue Mar 31 2020 17:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47353 * 120.00433 * 2 1 3 5 5 O 1.21281 * 119.99804 * 105.27047 * 4 2 1 6 6 N 1.34776 * 119.99977 * 285.28096 * 4 2 1 7 7 C 1.46497 * 120.00185 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47197 * 179.97438 * 7 6 4 9 9 C 1.38238 * 119.97879 * 269.72656 * 8 7 6 10 10 C 1.38195 * 120.02880 * 179.72441 * 9 8 7 11 11 C 1.38464 * 119.97016 * 0.57046 * 10 9 8 12 12 F 1.35103 * 120.02332 * 179.67924 * 11 10 9 13 13 C 1.38457 * 119.95195 * 359.70985 * 11 10 9 14 14 C 1.38199 * 119.96899 * 359.97438 * 13 11 10 15 15 N 1.46897 * 109.46971 * 240.00152 * 2 1 3 16 16 C 1.46857 * 111.00095 * 76.44377 * 15 2 1 17 17 C 1.53030 * 109.52484 * 174.16039 * 16 15 2 18 18 C 1.53118 * 109.28297 * 59.17653 * 17 16 15 19 19 C 1.50692 * 109.52537 * 182.43901 * 18 17 16 20 20 H 1.08008 * 120.00052 * 119.68724 * 19 18 17 21 21 C 1.37876 * 120.00114 * 299.68206 * 19 18 17 22 22 N 1.31509 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46933 * 90.00630 * 23 21 19 25 25 H 1.48503 * 109.46950 * 210.00258 * 23 21 19 26 26 H 1.48494 * 109.47339 * 330.00114 * 23 21 19 27 27 C 1.53121 * 109.15889 * 302.34883 * 18 17 16 28 28 C 1.46848 * 111.00283 * 312.23160 * 15 2 1 29 29 H 1.08996 * 109.47517 * 299.99741 * 1 2 3 30 30 H 1.09000 * 109.47322 * 59.99774 * 1 2 3 31 31 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99909 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.46993 * 60.00087 * 7 6 4 34 34 H 1.08998 * 109.47008 * 300.00000 * 7 6 4 35 35 H 1.08001 * 119.98879 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.02111 * 180.25643 * 10 9 8 37 37 H 1.07992 * 120.01640 * 179.97438 * 13 11 10 38 38 H 1.08002 * 119.98673 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.45703 * 294.17826 * 16 15 2 40 40 H 1.08995 * 109.46273 * 54.13756 * 16 15 2 41 41 H 1.08999 * 109.50556 * 299.23513 * 17 16 15 42 42 H 1.09002 * 109.50573 * 179.11589 * 17 16 15 43 43 H 1.09004 * 109.52252 * 62.24649 * 18 17 16 44 44 H 0.97004 * 119.99571 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.50113 * 297.70566 * 27 18 17 46 46 H 1.09000 * 109.50160 * 177.59325 * 27 18 17 47 47 H 1.08992 * 109.46364 * 305.85366 * 28 15 2 48 48 H 1.09005 * 109.45983 * 65.82378 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4953 -1.8277 1.1389 6 7 1.9670 -0.1044 2.4324 7 6 2.4548 -0.7953 3.6286 8 6 2.2699 0.0927 4.8321 9 6 3.2768 0.9606 5.2113 10 6 3.1061 1.7795 6.3114 11 6 1.9306 1.7218 7.0408 12 9 1.7652 2.5172 8.1203 13 6 0.9251 0.8480 6.6636 14 6 1.0956 0.0348 5.5592 15 7 2.0196 -0.6925 -1.1994 16 6 1.8920 0.1602 -2.3883 17 6 2.5422 -0.5336 -3.5874 18 6 1.8545 -1.8806 -3.8262 19 6 2.5296 -2.5953 -4.9683 20 1 2.9883 -3.5596 -4.8063 21 6 2.5617 -2.0182 -6.2201 22 7 2.0036 -0.8438 -6.4173 23 14 3.3992 -2.9039 -7.6357 24 1 2.4125 -3.7679 -8.3320 25 1 3.9443 -1.9059 -8.5908 26 1 4.5066 -3.7417 -7.1095 27 6 1.9596 -2.7306 -2.5569 28 6 1.3263 -1.9732 -1.3877 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.5969 0.7892 2.5055 33 1 3.5130 -1.0274 3.5079 34 1 1.8938 -1.7192 3.7687 35 1 4.1957 1.0018 4.6453 36 1 3.8912 2.4605 6.6051 37 1 0.0080 0.8018 7.2320 38 1 0.3112 -0.6467 5.2644 39 1 0.8368 0.3351 -2.5981 40 1 2.3888 1.1132 -2.2068 41 1 3.6006 -0.6964 -3.3838 42 1 2.4335 0.0925 -4.4731 43 1 0.8045 -1.7158 -4.0682 44 1 2.0266 -0.4377 -7.2979 45 1 3.0088 -2.9280 -2.3371 46 1 1.4348 -3.6742 -2.7063 47 1 1.4123 -2.5696 -0.4795 48 1 0.2737 -1.7882 -1.6023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542882310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:16 Heat of formation + Delta-G solvation = -57.765965 kcal Electronic energy + Delta-G solvation = -28250.639050 eV Core-core repulsion = 24219.479096 eV Total energy + Delta-G solvation = -4031.159954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.34674 -40.28692 -39.48106 -37.81887 -34.97731 -34.34926 -32.10234 -31.65655 -31.23254 -29.89472 -28.96199 -26.50546 -25.65804 -23.81838 -23.56588 -22.17246 -21.91761 -21.30748 -20.03317 -18.31475 -18.15831 -17.10112 -16.89348 -16.56010 -16.20597 -16.01752 -15.56379 -15.18071 -14.87795 -14.52401 -14.47873 -14.17864 -14.02779 -13.87721 -13.79502 -13.45827 -12.89224 -12.75841 -12.73100 -12.35269 -12.29160 -12.04412 -11.98012 -11.76732 -11.52255 -11.41054 -11.20404 -10.88158 -10.72044 -10.42581 -10.05363 -9.94377 -9.71285 -9.63006 -9.36106 -9.19439 -9.11257 -8.73527 -8.64386 -8.23146 -7.67191 -5.92029 -3.96317 0.53644 0.71851 2.75856 2.84703 3.34873 3.35179 3.41505 3.46107 3.76443 4.18644 4.20736 4.40449 4.46204 4.50907 4.73499 4.74908 4.80402 5.09161 5.15570 5.20819 5.36155 5.38331 5.42125 5.53620 5.58572 5.61304 5.68309 5.70908 5.87548 5.97881 6.01523 6.05003 6.20401 6.26347 6.32520 6.36526 6.52721 6.63223 6.76294 7.01052 7.16098 7.23926 7.36991 7.51933 7.68989 7.73636 7.88887 8.12800 8.21200 8.32669 8.56065 9.07401 9.67613 11.14226 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.001887 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.542750 B =14836.145871 C =14903.924144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 H 0.097 0.903 4 C 0.522 3.478 5 O -0.514 6.514 6 N -0.735 5.735 7 C 0.163 3.837 8 C -0.115 4.115 9 C -0.070 4.070 10 C -0.155 4.155 11 C 0.103 3.897 12 F -0.140 7.140 13 C -0.156 4.156 14 C -0.071 4.071 15 N -0.514 5.514 16 C 0.058 3.942 17 C -0.103 4.103 18 C 0.047 3.953 19 C -0.507 4.507 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.275 1.275 27 C -0.104 4.104 28 C 0.055 3.945 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.025 0.975 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.019 0.981 44 H 0.258 0.742 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 7.659 26.261 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.049 4.049 3 H 0.115 0.885 4 C 0.308 3.692 5 O -0.387 6.387 6 N -0.390 5.390 7 C 0.040 3.960 8 C -0.116 4.116 9 C -0.089 4.089 10 C -0.174 4.174 11 C 0.083 3.917 12 F -0.118 7.118 13 C -0.175 4.175 14 C -0.090 4.090 15 N -0.238 5.238 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.029 3.971 19 C -0.545 4.545 20 H 0.072 0.928 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.717 3.283 24 H -0.209 1.209 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.142 4.142 28 C -0.072 4.072 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.233 0.767 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.038 0.962 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.050 6.858 26.121 27.084 hybrid contribution -0.631 0.486 -0.569 0.979 sum -2.681 7.344 25.552 26.721 Atomic orbital electron populations 1.22377 0.95508 1.03311 1.02652 1.21599 0.94051 0.98441 0.90824 0.88481 1.20753 0.77962 0.86604 0.83844 1.90684 1.43435 1.19088 1.85475 1.46097 1.65862 1.20443 1.06580 1.20110 1.00948 0.93843 0.81123 1.20013 0.94796 0.98917 0.97889 1.21032 0.99028 0.93561 0.95278 1.21194 0.97170 1.02094 0.96950 1.17810 0.95694 0.92272 0.85896 1.91516 1.95846 1.71928 1.52540 1.21180 0.99435 0.97550 0.99298 1.21013 0.96935 0.97600 0.93439 1.61922 1.56238 1.04374 1.01282 1.22335 0.98649 0.95163 0.90778 1.21656 0.98324 0.99544 0.94622 1.18695 0.95973 0.91580 0.90879 1.21237 1.35419 1.04226 0.93618 0.92764 1.24967 0.95549 0.94988 0.98598 1.69873 1.45164 1.15923 1.22370 0.86639 0.79825 0.79440 0.82352 1.20862 1.21356 1.19965 1.21647 1.00010 0.97714 0.94840 1.22304 0.94509 0.90138 1.00218 0.92295 0.91101 0.91400 0.76734 0.90397 0.90535 0.84543 0.84483 0.84524 0.84646 0.95663 0.92729 0.93782 0.88885 0.96246 0.93203 0.92484 0.93384 0.90519 0.95950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.30 37.16 0.31 -1.80 16 2 C 0.06 0.87 2.70 -68.87 -0.19 0.68 16 3 H 0.10 1.14 7.86 -51.93 -0.41 0.73 16 4 C 0.52 7.10 6.97 -10.99 -0.08 7.03 16 5 O -0.51 -9.15 14.31 5.56 0.08 -9.07 16 6 N -0.74 -6.83 5.55 -61.47 -0.34 -7.17 16 7 C 0.16 1.36 5.80 -5.20 -0.03 1.33 16 8 C -0.12 -0.77 5.25 -104.62 -0.55 -1.32 16 9 C -0.07 -0.44 9.70 -39.60 -0.38 -0.83 16 10 C -0.16 -1.01 10.03 -39.51 -0.40 -1.40 16 11 C 0.10 0.76 7.30 -39.42 -0.29 0.47 16 12 F -0.14 -1.19 17.27 2.25 0.04 -1.15 16 13 C -0.16 -0.99 10.03 -39.52 -0.40 -1.39 16 14 C -0.07 -0.43 9.70 -39.59 -0.38 -0.82 16 15 N -0.51 -9.34 4.35 -228.08 -0.99 -10.33 16 16 C 0.06 1.11 5.22 -3.83 -0.02 1.09 16 17 C -0.10 -2.46 5.12 -26.65 -0.14 -2.59 16 18 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 19 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 20 H 0.05 1.52 7.75 -52.48 -0.41 1.12 16 21 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 22 N -0.89 -25.60 11.37 55.43 0.63 -24.97 16 23 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.10 -2.34 5.32 -26.65 -0.14 -2.48 16 28 C 0.06 1.07 4.17 -3.83 -0.02 1.05 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.87 7.09 -51.93 -0.37 0.51 16 31 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.40 2.78 8.46 -40.82 -0.35 2.43 16 33 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.03 0.48 7.13 -51.93 -0.37 0.11 16 40 H 0.05 0.94 7.95 -51.93 -0.41 0.53 16 41 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.08 1.49 5.90 -51.93 -0.31 1.18 16 48 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -31.86 384.08 -10.49 -42.36 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.39 Total: 0.85 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.28 Total: -12.93 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.70 Total: -42.47 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.86 -10.49 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542882310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.411 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds