Wall clock time and date at job start Tue Mar 31 2020 17:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47353 * 120.00433 * 2 1 3 5 5 O 1.21281 * 119.99804 * 105.27047 * 4 2 1 6 6 N 1.34776 * 119.99977 * 285.28096 * 4 2 1 7 7 C 1.46497 * 120.00185 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47197 * 179.97438 * 7 6 4 9 9 C 1.38238 * 119.97879 * 269.72656 * 8 7 6 10 10 C 1.38195 * 120.02880 * 179.72441 * 9 8 7 11 11 C 1.38464 * 119.97016 * 0.57046 * 10 9 8 12 12 F 1.35103 * 120.02332 * 179.67924 * 11 10 9 13 13 C 1.38457 * 119.95195 * 359.70985 * 11 10 9 14 14 C 1.38199 * 119.96899 * 359.97438 * 13 11 10 15 15 N 1.46897 * 109.46971 * 240.00152 * 2 1 3 16 16 C 1.46857 * 111.00095 * 76.44377 * 15 2 1 17 17 C 1.53030 * 109.52484 * 174.16039 * 16 15 2 18 18 C 1.53118 * 109.28297 * 59.17653 * 17 16 15 19 19 C 1.50692 * 109.52537 * 182.43901 * 18 17 16 20 20 H 1.08008 * 120.00052 * 119.68724 * 19 18 17 21 21 C 1.37876 * 120.00114 * 299.68206 * 19 18 17 22 22 N 1.31509 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46933 * 90.00630 * 23 21 19 25 25 H 1.48503 * 109.46950 * 210.00258 * 23 21 19 26 26 H 1.48494 * 109.47339 * 330.00114 * 23 21 19 27 27 C 1.53121 * 109.15889 * 302.34883 * 18 17 16 28 28 C 1.46848 * 111.00283 * 312.23160 * 15 2 1 29 29 H 1.08996 * 109.47517 * 299.99741 * 1 2 3 30 30 H 1.09000 * 109.47322 * 59.99774 * 1 2 3 31 31 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99909 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.46993 * 60.00087 * 7 6 4 34 34 H 1.08998 * 109.47008 * 300.00000 * 7 6 4 35 35 H 1.08001 * 119.98879 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.02111 * 180.25643 * 10 9 8 37 37 H 1.07992 * 120.01640 * 179.97438 * 13 11 10 38 38 H 1.08002 * 119.98673 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.45703 * 294.17826 * 16 15 2 40 40 H 1.08995 * 109.46273 * 54.13756 * 16 15 2 41 41 H 1.08999 * 109.50556 * 299.23513 * 17 16 15 42 42 H 1.09002 * 109.50573 * 179.11589 * 17 16 15 43 43 H 1.09004 * 109.52252 * 62.24649 * 18 17 16 44 44 H 0.97004 * 119.99571 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.50113 * 297.70566 * 27 18 17 46 46 H 1.09000 * 109.50160 * 177.59325 * 27 18 17 47 47 H 1.08992 * 109.46364 * 305.85366 * 28 15 2 48 48 H 1.09005 * 109.45983 * 65.82378 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4953 -1.8277 1.1389 6 7 1.9670 -0.1044 2.4324 7 6 2.4548 -0.7953 3.6286 8 6 2.2699 0.0927 4.8321 9 6 3.2768 0.9606 5.2113 10 6 3.1061 1.7795 6.3114 11 6 1.9306 1.7218 7.0408 12 9 1.7652 2.5172 8.1203 13 6 0.9251 0.8480 6.6636 14 6 1.0956 0.0348 5.5592 15 7 2.0196 -0.6925 -1.1994 16 6 1.8920 0.1602 -2.3883 17 6 2.5422 -0.5336 -3.5874 18 6 1.8545 -1.8806 -3.8262 19 6 2.5296 -2.5953 -4.9683 20 1 2.9883 -3.5596 -4.8063 21 6 2.5617 -2.0182 -6.2201 22 7 2.0036 -0.8438 -6.4173 23 14 3.3992 -2.9039 -7.6357 24 1 2.4125 -3.7679 -8.3320 25 1 3.9443 -1.9059 -8.5908 26 1 4.5066 -3.7417 -7.1095 27 6 1.9596 -2.7306 -2.5569 28 6 1.3263 -1.9732 -1.3877 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.5969 0.7892 2.5055 33 1 3.5130 -1.0274 3.5079 34 1 1.8938 -1.7192 3.7687 35 1 4.1957 1.0018 4.6453 36 1 3.8912 2.4605 6.6051 37 1 0.0080 0.8018 7.2320 38 1 0.3112 -0.6467 5.2644 39 1 0.8368 0.3351 -2.5981 40 1 2.3888 1.1132 -2.2068 41 1 3.6006 -0.6964 -3.3838 42 1 2.4335 0.0925 -4.4731 43 1 0.8045 -1.7158 -4.0682 44 1 2.0266 -0.4377 -7.2979 45 1 3.0088 -2.9280 -2.3371 46 1 1.4348 -3.6742 -2.7063 47 1 1.4123 -2.5696 -0.4795 48 1 0.2737 -1.7882 -1.6023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542882310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:15 Heat of formation + Delta-G solvation = -77.287290 kcal Electronic energy + Delta-G solvation = -28251.485558 eV Core-core repulsion = 24219.479096 eV Total energy + Delta-G solvation = -4032.006462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.92288 -41.31755 -40.19501 -39.19079 -36.10663 -35.80561 -33.82191 -32.14633 -32.12065 -31.52917 -30.40725 -27.48770 -27.19136 -25.13266 -24.03446 -23.81901 -23.09052 -22.34177 -21.16150 -20.04927 -18.69649 -18.44248 -18.04871 -17.48184 -17.44133 -16.63816 -16.59478 -16.30200 -16.15522 -15.91854 -15.49340 -15.27915 -14.93475 -14.77688 -14.68910 -14.53095 -14.42564 -14.19390 -13.88190 -13.57067 -13.27028 -13.24472 -13.10945 -12.94344 -12.79497 -12.69036 -12.61462 -12.42806 -12.20529 -11.98409 -11.96494 -11.69343 -11.34350 -11.05466 -10.64871 -10.51890 -10.31861 -10.10673 -10.03178 -9.66399 -9.07475 -8.06657 -6.19103 0.00931 0.25962 1.40946 1.41757 1.52367 1.71845 2.10204 2.44891 2.68196 3.15186 3.20094 3.26456 3.61841 3.74545 3.86210 3.96725 4.03976 4.14119 4.20345 4.30444 4.31316 4.36663 4.46357 4.60382 4.64175 4.68509 4.74001 4.74668 4.88505 4.95800 4.97298 4.97882 4.98613 5.14807 5.16450 5.21834 5.22647 5.26319 5.37039 5.47932 5.50936 5.57866 5.64425 5.87528 6.02219 6.04975 6.26839 6.34293 6.44253 6.64847 6.90875 7.35813 7.47767 8.97798 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.001887 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.542750 B =14836.145871 C =14903.924144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.061 3.939 3 H 0.125 0.875 4 C 0.524 3.476 5 O -0.562 6.562 6 N -0.713 5.713 7 C 0.166 3.834 8 C -0.115 4.115 9 C -0.071 4.071 10 C -0.158 4.158 11 C 0.086 3.914 12 F -0.150 7.150 13 C -0.157 4.157 14 C -0.069 4.069 15 N -0.530 5.530 16 C 0.070 3.930 17 C -0.095 4.095 18 C 0.046 3.954 19 C -0.535 4.535 20 H 0.045 0.955 21 C 0.014 3.986 22 N -0.914 5.914 23 Si 0.952 3.048 24 H -0.276 1.276 25 H -0.280 1.280 26 H -0.273 1.273 27 C -0.098 4.098 28 C 0.070 3.930 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.027 0.973 40 H 0.081 0.919 41 H 0.025 0.975 42 H 0.066 0.934 43 H -0.008 1.008 44 H 0.261 0.739 45 H 0.039 0.961 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 8.754 27.678 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.051 4.051 3 H 0.143 0.857 4 C 0.310 3.690 5 O -0.440 6.440 6 N -0.367 5.367 7 C 0.043 3.957 8 C -0.116 4.116 9 C -0.090 4.090 10 C -0.177 4.177 11 C 0.066 3.934 12 F -0.128 7.128 13 C -0.176 4.176 14 C -0.088 4.088 15 N -0.255 5.255 16 C -0.057 4.057 17 C -0.134 4.134 18 C 0.028 3.972 19 C -0.573 4.573 20 H 0.063 0.937 21 C -0.185 4.185 22 N -0.554 5.554 23 Si 0.778 3.222 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.198 1.198 27 C -0.136 4.136 28 C -0.057 4.057 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.251 0.749 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.046 0.954 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.011 0.989 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.467 7.997 27.581 28.823 hybrid contribution -0.504 0.166 -0.941 1.081 sum -2.971 8.163 26.640 28.020 Atomic orbital electron populations 1.22317 0.93724 1.02858 1.04276 1.21750 0.95480 0.99116 0.88717 0.85750 1.20719 0.77449 0.85954 0.84831 1.90675 1.45919 1.21149 1.86237 1.45890 1.64402 1.20781 1.05659 1.20094 1.00383 0.94075 0.81146 1.19867 0.95354 0.98939 0.97437 1.21159 0.99333 0.93214 0.95247 1.21352 0.97260 1.02258 0.96787 1.18080 0.96512 0.92753 0.86016 1.91491 1.95950 1.72306 1.53092 1.21360 0.99754 0.97092 0.99375 1.21162 0.97031 0.97509 0.93064 1.61752 1.57177 1.04137 1.02391 1.22090 0.98441 0.95602 0.89542 1.21416 0.97390 0.98595 0.95974 1.18646 0.94070 0.92933 0.91567 1.21570 1.36154 1.04350 0.95192 0.93685 1.25699 0.96098 0.95750 1.00921 1.69992 1.45637 1.16814 1.22965 0.85653 0.78851 0.78450 0.79266 1.20151 1.20581 1.19791 1.21523 0.99238 0.97804 0.95066 1.22066 0.94437 0.90720 0.98521 0.88626 0.91510 0.92892 0.74938 0.91169 0.90804 0.83507 0.83311 0.83172 0.83216 0.95438 0.90106 0.95648 0.91541 0.98942 0.93015 0.94222 0.93531 0.90279 0.95363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 8.30 71.98 0.60 -2.96 16 2 C 0.06 1.51 2.70 44.17 0.12 1.63 16 3 H 0.12 2.42 7.86 -2.39 -0.02 2.40 16 4 C 0.52 13.18 6.97 87.66 0.61 13.79 16 5 O -0.56 -19.61 14.31 -3.03 -0.04 -19.65 16 6 N -0.71 -11.29 5.55 -466.79 -2.59 -13.88 16 7 C 0.17 2.44 5.80 85.63 0.50 2.93 16 8 C -0.12 -1.27 5.25 -19.86 -0.10 -1.37 16 9 C -0.07 -0.74 9.70 22.26 0.22 -0.52 16 10 C -0.16 -1.75 10.03 22.31 0.22 -1.53 16 11 C 0.09 1.13 7.30 22.38 0.16 1.29 16 12 F -0.15 -2.38 17.27 44.97 0.78 -1.60 16 13 C -0.16 -1.66 10.03 22.31 0.22 -1.44 16 14 C -0.07 -0.67 9.70 22.26 0.22 -0.45 16 15 N -0.53 -18.71 4.35 -875.52 -3.81 -22.51 16 16 C 0.07 2.65 5.22 86.32 0.45 3.10 16 17 C -0.10 -4.65 5.12 30.64 0.16 -4.49 16 18 C 0.05 2.44 2.16 -11.46 -0.02 2.41 16 19 C -0.53 -30.94 8.56 25.60 0.22 -30.72 16 20 H 0.04 2.61 7.75 -2.91 -0.02 2.59 16 21 C 0.01 0.78 5.31 84.66 0.45 1.23 16 22 N -0.91 -53.26 11.37 21.45 0.24 -53.02 16 23 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 26 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 27 C -0.10 -4.55 5.32 30.65 0.16 -4.38 16 28 C 0.07 2.70 4.17 86.33 0.36 3.06 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.46 7.09 -2.39 -0.02 1.44 16 31 H 0.05 1.27 6.44 -2.39 -0.02 1.25 16 32 H 0.41 4.20 8.46 -92.71 -0.78 3.41 16 33 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 34 H 0.07 1.17 8.09 -2.39 -0.02 1.16 16 35 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 39 H 0.03 1.02 7.13 -2.39 -0.02 1.01 16 40 H 0.08 2.61 7.95 -2.39 -0.02 2.59 16 41 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 3.58 6.17 -2.39 -0.01 3.56 16 43 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 44 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 45 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 47 H 0.08 3.06 5.90 -2.39 -0.01 3.04 16 48 H 0.03 1.05 6.59 -2.38 -0.02 1.04 16 Total: -1.00 -70.84 384.08 1.32 -69.51 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.18 Total: 12.65 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 4.54 Total: -18.42 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -6.15 Total: -89.42 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.04 Total: -19.65 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.60 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.84 1.32 -69.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542882310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.777 kcal (2) G-P(sol) polarization free energy of solvation -70.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds