Wall clock time and date at job start Tue Mar 31 2020 19:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47245 * 269.99994 * 3 2 1 5 5 H 1.48498 * 109.47220 * 30.00329 * 3 2 1 6 6 H 1.48501 * 109.46701 * 150.00005 * 3 2 1 7 7 C 1.37881 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46190 * 300.02693 * 9 7 2 11 11 C 1.53193 * 109.31223 * 178.60259 * 10 9 7 12 12 N 1.46926 * 108.76417 * 54.65620 * 11 10 9 13 13 C 1.34781 * 120.63144 * 126.40884 * 12 11 10 14 14 O 1.21586 * 119.99943 * 174.93779 * 13 12 11 15 15 N 1.34774 * 119.99542 * 354.93607 * 13 12 11 16 16 C 1.46504 * 119.99674 * 185.08558 * 15 13 12 17 17 H 1.08996 * 113.51087 * 29.60695 * 16 15 13 18 18 C 1.50994 * 114.52390 * 255.49541 * 16 15 13 19 19 H 1.09008 * 115.08043 * 322.77372 * 18 16 15 20 20 C 1.52816 * 125.69149 * 116.35498 * 18 16 15 21 21 C 1.56110 * 100.07829 * 126.75479 * 20 18 16 22 22 O 1.45476 * 105.74695 * 336.76204 * 21 20 18 23 23 C 1.38625 * 107.04563 * 347.99818 * 22 21 20 24 24 H 1.09007 * 108.89305 * 285.66827 * 23 22 21 25 25 C 1.47441 * 138.32815 * 131.32675 * 23 22 21 26 26 C 1.52729 * 125.43977 * 342.65013 * 25 23 22 27 27 C 1.53990 * 86.70824 * 108.93637 * 26 25 23 28 28 C 1.52710 * 125.48165 * 100.13535 * 25 23 22 29 29 C 1.46929 * 118.74036 * 306.38511 * 12 11 10 30 30 C 1.53040 * 109.45720 * 179.97438 * 9 7 2 31 31 H 0.96994 * 120.00038 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.45857 * 60.00398 * 9 7 2 33 33 H 1.08997 * 109.49977 * 298.57042 * 10 9 7 34 34 H 1.09003 * 109.49940 * 58.66316 * 10 9 7 35 35 H 1.09006 * 109.59809 * 294.86743 * 11 10 9 36 36 H 1.08998 * 109.70322 * 174.50956 * 11 10 9 37 37 H 0.97000 * 120.00678 * 5.08582 * 15 13 12 38 38 H 1.08993 * 111.28770 * 244.46779 * 20 18 16 39 39 H 1.08996 * 111.28485 * 9.05067 * 20 18 16 40 40 H 1.09004 * 110.19200 * 95.83206 * 21 20 18 41 41 H 1.08993 * 110.19210 * 217.69051 * 21 20 18 42 42 H 1.09005 * 113.67740 * 223.38703 * 26 25 23 43 43 H 1.08999 * 113.68308 * 354.48220 * 26 25 23 44 44 H 1.09001 * 113.57172 * 269.96362 * 27 26 25 45 45 H 1.08998 * 113.57335 * 139.19230 * 27 26 25 46 46 H 1.09004 * 113.67407 * 5.54770 * 28 25 23 47 47 H 1.09005 * 113.67506 * 136.54526 * 28 25 23 48 48 H 1.09008 * 109.58270 * 293.81845 * 29 12 11 49 49 H 1.09002 * 109.70216 * 173.46906 * 29 12 11 50 50 H 1.09008 * 109.49573 * 301.33936 * 30 9 7 51 51 H 1.08999 * 109.50006 * 61.43465 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3713 -2.5800 1.2491 11 6 -0.4193 -3.8920 1.2281 12 7 0.5232 -5.0094 1.0807 13 6 0.5130 -6.0362 1.9538 14 8 1.2336 -6.9980 1.7696 15 7 -0.2960 -5.9966 3.0310 16 6 -0.2273 -7.0584 4.0380 17 1 0.7607 -7.5100 4.1270 18 6 -1.3663 -8.0482 3.9838 19 1 -2.3388 -7.6206 3.7395 20 6 -1.2382 -9.5386 3.6712 21 6 -1.9747 -10.1415 4.9086 22 8 -1.9003 -9.1248 5.9464 23 6 -0.9878 -8.1730 5.5182 24 1 0.0187 -8.5798 5.6163 25 6 -0.9023 -6.7062 5.3952 26 6 -2.0888 -5.7449 5.4185 27 6 -1.5879 -5.3007 6.8052 28 6 -0.1882 -5.7749 6.3723 29 6 1.4768 -4.9866 -0.0369 30 6 2.2458 -3.6622 -0.0018 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5565 -0.8904 33 1 0.9996 -2.5478 2.1391 34 1 -0.3212 -1.7383 1.2615 35 1 -1.1141 -3.8868 0.3882 36 1 -0.9736 -4.0020 2.1601 37 1 -0.9238 -5.2651 3.1396 38 1 -1.7497 -9.7936 2.7432 39 1 -0.1936 -9.8485 3.6428 40 1 -3.0153 -10.3516 4.6615 41 1 -1.4741 -11.0522 5.2374 42 1 -2.0331 -4.9623 4.6617 43 1 -3.0570 -6.2449 5.4424 44 1 -2.0094 -5.8797 7.6270 45 1 -1.6525 -4.2249 6.9681 46 1 0.3583 -6.2990 7.1564 47 1 0.4062 -5.0019 5.8851 48 1 0.9366 -5.0708 -0.9799 49 1 2.1756 -5.8177 0.0593 50 1 2.8877 -3.5909 -0.8799 51 1 2.8564 -3.6198 0.9001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543803251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:06 Heat of formation + Delta-G solvation = 33.223558 kcal Electronic energy + Delta-G solvation = -30466.624698 eV Core-core repulsion = 26562.870651 eV Total energy + Delta-G solvation = -3903.754047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53145 -39.75873 -38.28704 -36.88545 -34.93219 -33.62449 -32.82142 -31.06545 -30.69629 -29.99373 -26.31343 -26.23511 -24.99631 -23.94669 -22.82877 -22.26763 -22.18927 -20.78923 -20.11255 -18.95425 -18.63530 -17.86355 -17.05559 -16.29759 -16.16322 -15.76958 -15.41638 -15.29454 -14.86983 -14.65632 -14.55946 -14.07841 -13.66253 -13.41725 -13.15711 -12.89099 -12.67584 -12.60255 -12.52099 -12.38875 -12.15146 -11.76724 -11.70024 -11.59349 -11.43841 -11.32913 -11.18591 -10.97361 -10.70021 -10.65421 -10.54874 -10.40127 -10.18735 -9.88996 -9.79121 -9.58963 -9.26780 -9.18599 -8.97162 -8.85689 -8.39908 -7.91405 -6.05804 -4.11700 2.61535 3.06474 3.26280 3.33485 3.37006 3.48813 3.83314 4.08437 4.19290 4.30232 4.38807 4.43902 4.50821 4.60623 4.79740 4.95252 5.01861 5.19357 5.20647 5.23332 5.25639 5.38601 5.49882 5.52112 5.55113 5.56944 5.63826 5.74103 5.75237 5.79530 5.83895 5.91971 5.94951 6.05319 6.11284 6.17241 6.21008 6.24342 6.45334 6.62339 6.65823 6.80260 6.86783 6.97905 7.11657 7.20110 7.43459 7.64564 7.89765 8.00699 8.29334 8.38072 8.91732 8.92823 9.53499 10.99634 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002927 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.156974 B = 9563.028148 C =10536.194558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.618 5.618 13 C 0.708 3.292 14 O -0.604 6.604 15 N -0.735 5.735 16 C 0.174 3.826 17 H 0.122 0.878 18 C -0.185 4.185 19 H 0.114 0.886 20 C -0.141 4.141 21 C 0.054 3.946 22 O -0.358 6.358 23 C 0.062 3.938 24 H 0.079 0.921 25 C -0.074 4.074 26 C -0.115 4.115 27 C -0.136 4.136 28 C -0.128 4.128 29 C 0.130 3.870 30 C -0.124 4.124 31 H 0.260 0.740 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.396 0.604 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.056 0.944 49 H 0.078 0.922 50 H 0.060 0.940 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -14.925 10.935 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.012 4.012 12 N -0.354 5.354 13 C 0.409 3.591 14 O -0.484 6.484 15 N -0.393 5.393 16 C 0.067 3.933 17 H 0.139 0.861 18 C -0.205 4.205 19 H 0.132 0.868 20 C -0.178 4.178 21 C -0.021 4.021 22 O -0.277 6.277 23 C 0.002 3.998 24 H 0.096 0.904 25 C -0.075 4.075 26 C -0.153 4.153 27 C -0.174 4.174 28 C -0.165 4.165 29 C 0.008 3.992 30 C -0.162 4.162 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.235 0.765 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.790 -15.487 10.963 19.838 hybrid contribution 0.105 1.273 -0.167 1.288 sum -5.685 -14.214 10.796 18.733 Atomic orbital electron populations 1.69833 1.05831 1.26444 1.51021 1.24958 0.94874 0.99041 0.95096 0.86621 0.79912 0.83524 0.78113 1.20718 1.21270 1.19987 1.21215 0.92961 0.90579 1.50160 0.92710 1.18611 0.92638 0.91747 0.93875 1.22010 1.00001 0.94434 0.99690 1.21891 0.91647 0.88061 0.99599 1.47420 1.38103 1.20815 1.29066 1.15849 0.80468 0.82928 0.79814 1.90843 1.46556 1.33947 1.77022 1.45157 1.42904 1.28253 1.22946 1.22078 0.97801 0.87371 0.86039 0.86068 1.25001 1.01217 0.95613 0.98672 0.86803 1.22627 1.01808 0.95266 0.98131 1.24189 1.00995 0.91000 0.85947 1.87737 1.63476 1.34138 1.42349 1.22233 0.93321 0.90516 0.93681 0.90395 1.22383 0.98903 0.91232 0.95022 1.22619 0.96823 0.97581 0.98227 1.22829 0.96385 1.01373 0.96767 1.22807 0.96746 0.98632 0.98352 1.21561 0.91153 0.99453 0.87074 1.22028 0.98898 0.94377 1.00936 0.93003 0.95477 0.94259 0.87871 0.92010 0.92748 0.76532 0.90222 0.90075 0.90162 0.91121 0.89368 0.90555 0.90021 0.90957 0.90941 0.88875 0.92531 0.90343 0.92133 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 11.31 55.43 0.63 -23.38 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 10 C -0.12 -2.62 5.15 -26.61 -0.14 -2.75 16 11 C 0.11 1.91 6.43 -3.71 -0.02 1.89 16 12 N -0.62 -11.01 2.97 -178.49 -0.53 -11.54 16 13 C 0.71 12.43 8.30 -86.92 -0.72 11.71 16 14 O -0.60 -12.28 15.53 5.29 0.08 -12.20 16 15 N -0.73 -10.10 5.31 -70.25 -0.37 -10.47 16 16 C 0.17 2.09 3.76 -79.25 -0.30 1.79 16 17 H 0.12 1.61 7.18 -51.93 -0.37 1.24 16 18 C -0.18 -2.01 4.30 -100.55 -0.43 -2.44 16 19 H 0.11 1.25 7.33 -51.92 -0.38 0.87 16 20 C -0.14 -1.37 6.79 -25.16 -0.17 -1.54 16 21 C 0.05 0.48 7.87 38.82 0.31 0.78 16 22 O -0.36 -4.08 11.31 -28.66 -0.32 -4.41 16 23 C 0.06 0.66 4.92 -38.06 -0.19 0.47 16 24 H 0.08 0.82 7.27 -51.92 -0.38 0.44 16 25 C -0.07 -0.75 1.12 -167.98 -0.19 -0.94 16 26 C -0.12 -1.06 6.69 -26.35 -0.18 -1.24 16 27 C -0.14 -1.19 8.08 -25.71 -0.21 -1.40 16 28 C -0.13 -1.22 7.90 -26.36 -0.21 -1.43 16 29 C 0.13 2.38 6.41 -3.71 -0.02 2.36 16 30 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 31 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 2.45 6.04 -51.93 -0.31 2.14 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.78 5.56 -51.93 -0.29 0.50 16 37 H 0.40 4.89 4.37 -40.82 -0.18 4.71 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.79 6.58 -51.93 -0.34 0.45 16 43 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 49 H 0.08 1.44 7.04 -51.93 -0.37 1.07 16 50 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 51 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -29.36 385.71 -11.41 -40.77 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.50 Total: 6.43 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.19 Total: -6.60 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.28 Total: -45.40 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.24 Total: -16.60 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.36 -11.41 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543803251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.996 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds