Wall clock time and date at job start Tue Mar 31 2020 19:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47245 * 269.99994 * 3 2 1 5 5 H 1.48498 * 109.47220 * 30.00329 * 3 2 1 6 6 H 1.48501 * 109.46701 * 150.00005 * 3 2 1 7 7 C 1.37881 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46190 * 300.02693 * 9 7 2 11 11 C 1.53193 * 109.31223 * 178.60259 * 10 9 7 12 12 N 1.46926 * 108.76417 * 54.65620 * 11 10 9 13 13 C 1.34781 * 120.63144 * 126.40884 * 12 11 10 14 14 O 1.21586 * 119.99943 * 174.93779 * 13 12 11 15 15 N 1.34774 * 119.99542 * 354.93607 * 13 12 11 16 16 C 1.46504 * 119.99674 * 185.08558 * 15 13 12 17 17 H 1.08996 * 113.51087 * 29.60695 * 16 15 13 18 18 C 1.50994 * 114.52390 * 255.49541 * 16 15 13 19 19 H 1.09008 * 115.08043 * 322.77372 * 18 16 15 20 20 C 1.52816 * 125.69149 * 116.35498 * 18 16 15 21 21 C 1.56110 * 100.07829 * 126.75479 * 20 18 16 22 22 O 1.45476 * 105.74695 * 336.76204 * 21 20 18 23 23 C 1.38625 * 107.04563 * 347.99818 * 22 21 20 24 24 H 1.09007 * 108.89305 * 285.66827 * 23 22 21 25 25 C 1.47441 * 138.32815 * 131.32675 * 23 22 21 26 26 C 1.52729 * 125.43977 * 342.65013 * 25 23 22 27 27 C 1.53990 * 86.70824 * 108.93637 * 26 25 23 28 28 C 1.52710 * 125.48165 * 100.13535 * 25 23 22 29 29 C 1.46929 * 118.74036 * 306.38511 * 12 11 10 30 30 C 1.53040 * 109.45720 * 179.97438 * 9 7 2 31 31 H 0.96994 * 120.00038 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.45857 * 60.00398 * 9 7 2 33 33 H 1.08997 * 109.49977 * 298.57042 * 10 9 7 34 34 H 1.09003 * 109.49940 * 58.66316 * 10 9 7 35 35 H 1.09006 * 109.59809 * 294.86743 * 11 10 9 36 36 H 1.08998 * 109.70322 * 174.50956 * 11 10 9 37 37 H 0.97000 * 120.00678 * 5.08582 * 15 13 12 38 38 H 1.08993 * 111.28770 * 244.46779 * 20 18 16 39 39 H 1.08996 * 111.28485 * 9.05067 * 20 18 16 40 40 H 1.09004 * 110.19200 * 95.83206 * 21 20 18 41 41 H 1.08993 * 110.19210 * 217.69051 * 21 20 18 42 42 H 1.09005 * 113.67740 * 223.38703 * 26 25 23 43 43 H 1.08999 * 113.68308 * 354.48220 * 26 25 23 44 44 H 1.09001 * 113.57172 * 269.96362 * 27 26 25 45 45 H 1.08998 * 113.57335 * 139.19230 * 27 26 25 46 46 H 1.09004 * 113.67407 * 5.54770 * 28 25 23 47 47 H 1.09005 * 113.67506 * 136.54526 * 28 25 23 48 48 H 1.09008 * 109.58270 * 293.81845 * 29 12 11 49 49 H 1.09002 * 109.70216 * 173.46906 * 29 12 11 50 50 H 1.09008 * 109.49573 * 301.33936 * 30 9 7 51 51 H 1.08999 * 109.50006 * 61.43465 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3713 -2.5800 1.2491 11 6 -0.4193 -3.8920 1.2281 12 7 0.5232 -5.0094 1.0807 13 6 0.5130 -6.0362 1.9538 14 8 1.2336 -6.9980 1.7696 15 7 -0.2960 -5.9966 3.0310 16 6 -0.2273 -7.0584 4.0380 17 1 0.7607 -7.5100 4.1270 18 6 -1.3663 -8.0482 3.9838 19 1 -2.3388 -7.6206 3.7395 20 6 -1.2382 -9.5386 3.6712 21 6 -1.9747 -10.1415 4.9086 22 8 -1.9003 -9.1248 5.9464 23 6 -0.9878 -8.1730 5.5182 24 1 0.0187 -8.5798 5.6163 25 6 -0.9023 -6.7062 5.3952 26 6 -2.0888 -5.7449 5.4185 27 6 -1.5879 -5.3007 6.8052 28 6 -0.1882 -5.7749 6.3723 29 6 1.4768 -4.9866 -0.0369 30 6 2.2458 -3.6622 -0.0018 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5565 -0.8904 33 1 0.9996 -2.5478 2.1391 34 1 -0.3212 -1.7383 1.2615 35 1 -1.1141 -3.8868 0.3882 36 1 -0.9736 -4.0020 2.1601 37 1 -0.9238 -5.2651 3.1396 38 1 -1.7497 -9.7936 2.7432 39 1 -0.1936 -9.8485 3.6428 40 1 -3.0153 -10.3516 4.6615 41 1 -1.4741 -11.0522 5.2374 42 1 -2.0331 -4.9623 4.6617 43 1 -3.0570 -6.2449 5.4424 44 1 -2.0094 -5.8797 7.6270 45 1 -1.6525 -4.2249 6.9681 46 1 0.3583 -6.2990 7.1564 47 1 0.4062 -5.0019 5.8851 48 1 0.9366 -5.0708 -0.9799 49 1 2.1756 -5.8177 0.0593 50 1 2.8877 -3.5909 -0.8799 51 1 2.8564 -3.6198 0.9001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543803251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:05 Heat of formation + Delta-G solvation = 17.700285 kcal Electronic energy + Delta-G solvation = -30467.297838 eV Core-core repulsion = 26562.870651 eV Total energy + Delta-G solvation = -3904.427187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.39190 -41.14993 -39.10992 -38.42985 -35.93807 -35.34063 -34.11318 -32.61847 -31.69816 -31.47452 -28.04845 -26.99710 -25.93271 -25.10061 -24.30798 -23.72506 -23.00324 -21.87257 -21.42702 -20.40970 -19.46228 -19.20708 -18.31342 -18.05972 -16.99093 -16.78707 -16.60995 -16.42373 -16.23998 -16.04778 -15.49946 -15.20219 -15.00135 -14.84577 -14.49845 -14.39614 -14.22460 -13.97989 -13.42802 -13.33361 -13.20121 -13.14060 -12.94927 -12.81159 -12.58729 -12.46031 -12.43618 -12.23746 -12.14039 -11.98379 -11.95046 -11.55493 -11.46487 -11.31213 -11.22611 -10.98617 -10.77519 -10.66855 -10.38542 -10.10414 -10.05682 -9.37114 -8.06591 -6.19242 1.41836 1.44420 1.52803 1.59434 1.98705 2.14055 2.45201 2.90824 2.98712 3.20029 3.27472 3.44080 3.67718 3.72329 3.87698 4.05241 4.09482 4.16137 4.21304 4.25527 4.34641 4.37346 4.43420 4.47475 4.52713 4.54949 4.60091 4.69719 4.76492 4.81451 4.83480 4.87873 4.89689 4.99104 5.01760 5.05954 5.09657 5.15167 5.22311 5.24434 5.28533 5.45062 5.47663 5.50086 5.56430 5.67184 6.00142 6.01727 6.06771 6.15494 6.41355 6.89891 6.97354 7.48265 7.56249 8.96621 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002927 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.156974 B = 9563.028148 C =10536.194558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.047 3.953 10 C -0.112 4.112 11 C 0.122 3.878 12 N -0.621 5.621 13 C 0.706 3.294 14 O -0.633 6.633 15 N -0.720 5.720 16 C 0.163 3.837 17 H 0.106 0.894 18 C -0.186 4.186 19 H 0.117 0.883 20 C -0.141 4.141 21 C 0.056 3.944 22 O -0.374 6.374 23 C 0.066 3.934 24 H 0.076 0.924 25 C -0.065 4.065 26 C -0.114 4.114 27 C -0.130 4.130 28 C -0.131 4.131 29 C 0.136 3.864 30 C -0.113 4.113 31 H 0.261 0.739 32 H 0.004 0.996 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.404 0.596 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 -15.404 11.892 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.151 4.151 11 C -0.001 4.001 12 N -0.357 5.357 13 C 0.407 3.593 14 O -0.515 6.515 15 N -0.378 5.378 16 C 0.057 3.943 17 H 0.124 0.876 18 C -0.206 4.206 19 H 0.135 0.865 20 C -0.179 4.179 21 C -0.019 4.019 22 O -0.293 6.293 23 C 0.006 3.994 24 H 0.093 0.907 25 C -0.066 4.066 26 C -0.151 4.151 27 C -0.167 4.167 28 C -0.168 4.168 29 C 0.013 3.987 30 C -0.152 4.152 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.244 0.756 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.752 -15.969 11.944 21.054 hybrid contribution 0.416 1.391 -0.468 1.526 sum -6.337 -14.578 11.476 19.605 Atomic orbital electron populations 1.69937 1.06700 1.27078 1.51270 1.25601 0.95690 1.01789 0.94913 0.85737 0.78781 0.80133 0.78058 1.20449 1.20767 1.19896 1.21543 0.92867 0.92287 1.50481 0.93587 1.18584 0.93025 0.91833 0.93729 1.21761 0.99308 0.95934 0.98092 1.21753 0.91005 0.85782 1.01551 1.47399 1.38128 1.21054 1.29154 1.15972 0.80624 0.82389 0.80269 1.90822 1.47900 1.34998 1.77759 1.45061 1.41961 1.28765 1.22002 1.22195 0.97756 0.87579 0.86789 0.87593 1.24992 1.00576 0.95946 0.99104 0.86464 1.22642 1.01698 0.94580 0.98947 1.24318 1.01998 0.90761 0.84848 1.87714 1.63564 1.34632 1.43426 1.22167 0.93183 0.90720 0.93314 0.90679 1.22361 0.99279 0.91343 0.93632 1.22663 0.96531 0.97303 0.98648 1.22805 0.95464 1.01881 0.96589 1.22823 0.97274 0.98365 0.98324 1.21439 0.91322 0.98018 0.87890 1.21871 0.98297 0.94440 1.00561 0.92941 0.97834 0.95327 0.90193 0.91640 0.89485 0.75603 0.89749 0.90753 0.88653 0.89673 0.88987 0.90152 0.89616 0.90262 0.90480 0.89551 0.91530 0.90242 0.91786 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.23 11.31 21.45 0.24 -48.99 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -28.35 8.56 25.60 0.22 -28.13 16 8 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 9 C 0.05 2.21 2.06 -11.51 -0.02 2.18 16 10 C -0.11 -4.78 5.15 30.67 0.16 -4.62 16 11 C 0.12 4.05 6.43 86.36 0.56 4.61 16 12 N -0.62 -21.53 2.97 -836.88 -2.49 -24.02 16 13 C 0.71 24.07 8.30 179.05 1.49 25.56 16 14 O -0.63 -25.41 15.53 -3.99 -0.06 -25.47 16 15 N -0.72 -18.81 5.31 -494.45 -2.63 -21.44 16 16 C 0.16 3.75 3.76 37.65 0.14 3.90 16 17 H 0.11 2.81 7.18 -2.39 -0.02 2.79 16 18 C -0.19 -3.78 4.30 -17.22 -0.07 -3.85 16 19 H 0.12 2.32 7.33 -2.38 -0.02 2.31 16 20 C -0.14 -2.55 6.79 31.61 0.21 -2.34 16 21 C 0.06 0.87 7.87 73.06 0.58 1.44 16 22 O -0.37 -7.83 11.31 -125.46 -1.42 -9.25 16 23 C 0.07 1.30 4.92 23.26 0.11 1.42 16 24 H 0.08 1.53 7.27 -2.38 -0.02 1.51 16 25 C -0.07 -1.21 1.12 -60.91 -0.07 -1.28 16 26 C -0.11 -1.86 6.69 30.84 0.21 -1.65 16 27 C -0.13 -2.01 8.08 31.25 0.25 -1.76 16 28 C -0.13 -2.30 7.90 30.83 0.24 -2.05 16 29 C 0.14 4.91 6.41 86.36 0.55 5.47 16 30 C -0.11 -4.60 5.30 30.67 0.16 -4.44 16 31 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 3.82 6.04 -2.39 -0.01 3.81 16 35 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 36 H 0.09 2.31 5.56 -2.39 -0.01 2.30 16 37 H 0.40 9.14 4.37 -92.71 -0.41 8.73 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.43 6.58 -2.38 -0.02 1.41 16 43 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.08 2.87 7.04 -2.39 -0.02 2.86 16 50 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 51 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -62.40 385.71 1.36 -61.04 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.52 Total: 27.93 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.17 Total: -4.10 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -4.87 Total: -94.45 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.48 Total: -34.72 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -62.40 1.36 -61.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543803251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.738 kcal (2) G-P(sol) polarization free energy of solvation -62.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds