Wall clock time and date at job start Tue Mar 31 2020 18:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00034 * 2 1 4 4 C 1.50699 * 109.47162 * 89.99288 * 3 2 1 5 5 C 1.38227 * 120.01020 * 105.00587 * 4 3 2 6 6 C 1.38219 * 120.02402 * 180.27931 * 5 4 3 7 7 C 1.38271 * 120.05279 * 359.48356 * 6 5 4 8 8 C 1.38179 * 120.02498 * 0.51287 * 7 6 5 9 9 C 1.38435 * 120.01563 * 285.02268 * 4 3 2 10 10 F 1.35097 * 120.02437 * 359.95787 * 9 4 3 11 11 C 1.34779 * 120.00443 * 179.97438 * 2 1 3 12 12 O 1.21277 * 120.00585 * 180.02562 * 11 2 1 13 13 C 1.50699 * 119.99679 * 0.02562 * 11 2 1 14 14 N 1.46900 * 109.47211 * 179.97438 * 13 11 2 15 15 C 1.46844 * 110.99984 * 294.20920 * 14 13 11 16 16 C 1.53037 * 109.52848 * 174.15738 * 15 14 13 17 17 C 1.53128 * 109.27502 * 59.17877 * 16 15 14 18 18 C 1.50690 * 109.57663 * 182.41064 * 17 16 15 19 19 H 1.08001 * 120.00498 * 119.71074 * 18 17 16 20 20 C 1.37882 * 120.00254 * 299.72014 * 18 17 16 21 21 N 1.31511 * 119.99606 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00347 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47277 * 89.99562 * 22 20 18 24 24 H 1.48497 * 109.47530 * 209.99945 * 22 20 18 25 25 H 1.48501 * 109.47127 * 329.99725 * 22 20 18 26 26 C 1.53115 * 109.16055 * 302.34978 * 17 16 15 27 27 C 1.46849 * 111.00316 * 170.00032 * 14 13 11 28 28 H 1.09003 * 109.46813 * 90.00389 * 1 2 3 29 29 H 1.09005 * 109.46977 * 209.99576 * 1 2 3 30 30 H 1.08994 * 109.47678 * 330.00189 * 1 2 3 31 31 H 1.09004 * 109.46927 * 329.99345 * 3 2 1 32 32 H 1.09000 * 109.47495 * 209.99658 * 3 2 1 33 33 H 1.08002 * 119.98464 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.97200 * 179.72235 * 6 5 4 35 35 H 1.07997 * 119.98711 * 180.25982 * 7 6 5 36 36 H 1.07994 * 120.01414 * 179.76315 * 8 7 6 37 37 H 1.09000 * 109.47551 * 299.99720 * 13 11 2 38 38 H 1.09000 * 109.47390 * 60.00017 * 13 11 2 39 39 H 1.08999 * 109.46362 * 294.17684 * 15 14 13 40 40 H 1.09008 * 109.46359 * 54.14110 * 15 14 13 41 41 H 1.09002 * 109.50110 * 299.24561 * 16 15 14 42 42 H 1.09000 * 109.50862 * 179.11632 * 16 15 14 43 43 H 1.09008 * 109.51897 * 62.24990 * 17 16 15 44 44 H 0.97001 * 120.00054 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.50317 * 297.71316 * 26 17 16 46 46 H 1.09005 * 109.50291 * 177.59150 * 26 17 16 47 47 H 1.08999 * 109.45771 * 305.85707 * 27 14 13 48 48 H 1.09004 * 109.46108 * 65.83234 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 1.4208 5 6 3.7110 1.5784 1.9694 6 6 3.9402 1.9721 3.2744 7 6 2.9097 2.5016 4.0291 8 6 1.6469 2.6280 3.4828 9 6 1.4148 2.2290 2.1771 10 9 0.1806 2.3525 1.6418 11 6 2.1390 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 7 2.3401 -3.5888 0.0005 15 6 3.1094 -3.6235 -1.2498 16 6 4.1893 -4.7037 -1.1562 17 6 3.5263 -6.0610 -0.9052 18 6 4.5869 -7.1206 -0.7530 19 1 4.6601 -7.6833 0.1659 20 6 5.4641 -7.3717 -1.7867 21 7 5.3748 -6.6867 -2.9058 22 14 6.7792 -8.6846 -1.5977 23 1 6.2459 -9.9900 -2.0632 24 1 7.9664 -8.3167 -2.4103 25 1 7.1708 -8.7909 -0.1692 26 6 2.6925 -5.9836 0.3766 27 6 1.6560 -4.8662 0.2386 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6084 2.0284 -0.5140 32 1 3.1499 1.1384 -0.5138 33 1 4.5175 1.1681 1.3798 34 1 4.9259 1.8695 3.7037 35 1 3.0910 2.8127 5.0473 36 1 0.8412 3.0381 4.0736 37 1 0.7585 -2.5299 0.8903 38 1 0.7592 -2.5303 -0.8897 39 1 2.4413 -3.8489 -2.0811 40 1 3.5791 -2.6537 -1.4143 41 1 4.8659 -4.4716 -0.3337 42 1 4.7500 -4.7398 -2.0903 43 1 2.8793 -6.3113 -1.7461 44 1 5.9916 -6.8635 -3.6332 45 1 3.3455 -5.7716 1.2232 46 1 2.1837 -6.9340 0.5378 47 1 1.0700 -4.7990 1.1552 48 1 0.9949 -5.0859 -0.5998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543811977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:01 Heat of formation + Delta-G solvation = -44.216389 kcal Electronic energy + Delta-G solvation = -29182.432119 eV Core-core repulsion = 25151.859719 eV Total energy + Delta-G solvation = -4030.572400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.28625 -40.15590 -39.07869 -37.70715 -35.61257 -33.82529 -32.36578 -31.27059 -30.75239 -29.66955 -28.13017 -27.22831 -25.83030 -24.36144 -23.02259 -22.05775 -22.01269 -21.29148 -19.11076 -18.53296 -17.93616 -17.08084 -16.55159 -16.48093 -16.31893 -16.26012 -15.57314 -15.38170 -14.79944 -14.45922 -14.32958 -14.13344 -13.82990 -13.69265 -13.47636 -13.16905 -12.75174 -12.70149 -12.67617 -12.42092 -12.31754 -12.14357 -12.05444 -11.71952 -11.53757 -11.29704 -11.23855 -10.89356 -10.65889 -10.47347 -10.13457 -9.89133 -9.69754 -9.32661 -9.20554 -8.99315 -8.88805 -8.74115 -8.53078 -8.20538 -7.69325 -5.89336 -3.94283 0.83147 0.95064 2.77457 2.87994 3.36389 3.42298 3.42970 3.46929 3.93992 4.37654 4.40321 4.47050 4.52011 4.64472 4.77126 4.95715 4.98785 5.01788 5.21569 5.24700 5.38688 5.40555 5.42263 5.50697 5.56097 5.60396 5.76883 5.81418 5.85609 5.93006 6.09034 6.16656 6.18131 6.28559 6.32952 6.45206 6.61935 6.71342 6.80539 6.93184 7.12655 7.24262 7.30702 7.54434 7.68710 7.76652 7.91605 8.15543 8.26342 8.34173 8.57387 9.09263 9.69467 11.16919 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.002531 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.073268 B =11058.542539 C =11616.489940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.620 5.620 3 C 0.158 3.842 4 C -0.136 4.136 5 C -0.065 4.065 6 C -0.130 4.130 7 C -0.091 4.091 8 C -0.159 4.159 9 C 0.106 3.894 10 F -0.137 7.137 11 C 0.516 3.484 12 O -0.506 6.506 13 C 0.039 3.961 14 N -0.519 5.519 15 C 0.054 3.946 16 C -0.099 4.099 17 C 0.047 3.953 18 C -0.509 4.509 19 H 0.054 0.946 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.105 4.105 27 C 0.062 3.938 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.258 0.742 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 21.411 9.654 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.356 5.356 3 C 0.035 3.965 4 C -0.139 4.139 5 C -0.084 4.084 6 C -0.148 4.148 7 C -0.109 4.109 8 C -0.178 4.178 9 C 0.086 3.914 10 F -0.115 7.115 11 C 0.304 3.696 12 O -0.379 6.379 13 C -0.093 4.093 14 N -0.244 5.244 15 C -0.073 4.073 16 C -0.138 4.138 17 C 0.028 3.972 18 C -0.547 4.547 19 H 0.072 0.928 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.143 4.143 27 C -0.066 4.066 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.336 21.463 9.809 25.763 hybrid contribution -0.296 -0.750 -0.618 1.016 sum -10.633 20.713 9.191 25.031 Atomic orbital electron populations 1.22094 0.79505 1.04255 1.02090 1.47934 1.06897 1.05281 1.75506 1.20197 0.99163 0.85483 0.91655 1.20356 0.93486 1.01866 0.98157 1.21144 0.96065 0.95876 0.95267 1.21287 0.99811 0.99357 0.94361 1.21045 0.91973 0.97895 1.00003 1.21102 0.98882 1.03836 0.93967 1.17544 0.79744 1.01529 0.92573 1.91366 1.40331 1.93674 1.86174 1.20794 0.88368 0.84888 0.75580 1.90685 1.13653 1.86642 1.46876 1.21949 0.94813 0.90462 1.02039 1.61759 1.23413 1.01431 1.37799 1.22423 0.96210 1.01619 0.87010 1.21598 0.96034 0.93133 1.03000 1.18705 0.93840 0.93193 0.91425 1.21205 1.14693 1.18593 1.00211 0.92801 1.24971 0.97532 0.96220 0.95353 1.69885 1.37895 1.40662 1.04671 0.86637 0.81539 0.82020 0.78041 1.20877 1.21329 1.19964 1.21667 0.96706 0.94460 1.01465 1.22152 0.96180 0.89642 0.98616 0.92608 0.91083 0.89727 0.89598 0.88350 0.84388 0.85160 0.85098 0.84892 0.88737 0.92685 0.96706 0.90857 0.93735 0.89120 0.96273 0.93173 0.92404 0.93118 0.92487 0.95740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.22 59.85 0.61 1.17 16 2 N -0.62 -7.34 2.86 -182.95 -0.52 -7.86 16 3 C 0.16 1.69 5.27 -5.19 -0.03 1.66 16 4 C -0.14 -1.47 5.47 -104.55 -0.57 -2.04 16 5 C -0.06 -0.69 9.67 -39.59 -0.38 -1.08 16 6 C -0.13 -1.17 10.04 -39.58 -0.40 -1.57 16 7 C -0.09 -0.72 10.04 -39.59 -0.40 -1.12 16 8 C -0.16 -1.36 10.03 -39.51 -0.40 -1.76 16 9 C 0.11 1.06 7.25 -39.42 -0.29 0.77 16 10 F -0.14 -1.32 13.82 2.25 0.03 -1.29 16 11 C 0.52 7.93 7.35 -10.98 -0.08 7.85 16 12 O -0.51 -9.63 13.91 5.56 0.08 -9.55 16 13 C 0.04 0.58 4.00 -4.98 -0.02 0.56 16 14 N -0.52 -9.89 4.40 -236.11 -1.04 -10.93 16 15 C 0.05 1.17 5.10 -3.84 -0.02 1.15 16 16 C -0.10 -2.52 5.13 -26.65 -0.14 -2.65 16 17 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 18 C -0.51 -14.41 8.56 -34.44 -0.29 -14.71 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 21 N -0.89 -26.17 11.37 55.43 0.63 -25.54 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.11 -2.28 5.32 -26.65 -0.14 -2.43 16 27 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.57 6.44 -51.93 -0.33 0.23 16 30 H 0.08 0.69 4.93 -51.93 -0.26 0.43 16 31 H 0.09 0.74 8.01 -51.93 -0.42 0.33 16 32 H 0.10 1.14 7.23 -51.93 -0.38 0.77 16 33 H 0.14 1.53 8.00 -52.49 -0.42 1.11 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.09 1.19 7.25 -51.93 -0.38 0.81 16 38 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 1.61 5.78 -51.92 -0.30 1.31 16 41 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 2.53 6.18 -51.93 -0.32 2.21 16 43 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -32.52 380.73 -10.36 -42.88 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.40 Total: 0.16 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.85 Total: -10.46 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.93 Total: -44.33 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.03 Total: -1.29 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.52 -10.36 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543811977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.333 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds