Wall clock time and date at job start Tue Mar 31 2020 18:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00034 * 2 1 4 4 C 1.50699 * 109.47162 * 89.99288 * 3 2 1 5 5 C 1.38227 * 120.01020 * 105.00587 * 4 3 2 6 6 C 1.38219 * 120.02402 * 180.27931 * 5 4 3 7 7 C 1.38271 * 120.05279 * 359.48356 * 6 5 4 8 8 C 1.38179 * 120.02498 * 0.51287 * 7 6 5 9 9 C 1.38435 * 120.01563 * 285.02268 * 4 3 2 10 10 F 1.35097 * 120.02437 * 359.95787 * 9 4 3 11 11 C 1.34779 * 120.00443 * 179.97438 * 2 1 3 12 12 O 1.21277 * 120.00585 * 180.02562 * 11 2 1 13 13 C 1.50699 * 119.99679 * 0.02562 * 11 2 1 14 14 N 1.46900 * 109.47211 * 179.97438 * 13 11 2 15 15 C 1.46844 * 110.99984 * 294.20920 * 14 13 11 16 16 C 1.53037 * 109.52848 * 174.15738 * 15 14 13 17 17 C 1.53128 * 109.27502 * 59.17877 * 16 15 14 18 18 C 1.50690 * 109.57663 * 182.41064 * 17 16 15 19 19 H 1.08001 * 120.00498 * 119.71074 * 18 17 16 20 20 C 1.37882 * 120.00254 * 299.72014 * 18 17 16 21 21 N 1.31511 * 119.99606 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00347 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47277 * 89.99562 * 22 20 18 24 24 H 1.48497 * 109.47530 * 209.99945 * 22 20 18 25 25 H 1.48501 * 109.47127 * 329.99725 * 22 20 18 26 26 C 1.53115 * 109.16055 * 302.34978 * 17 16 15 27 27 C 1.46849 * 111.00316 * 170.00032 * 14 13 11 28 28 H 1.09003 * 109.46813 * 90.00389 * 1 2 3 29 29 H 1.09005 * 109.46977 * 209.99576 * 1 2 3 30 30 H 1.08994 * 109.47678 * 330.00189 * 1 2 3 31 31 H 1.09004 * 109.46927 * 329.99345 * 3 2 1 32 32 H 1.09000 * 109.47495 * 209.99658 * 3 2 1 33 33 H 1.08002 * 119.98464 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.97200 * 179.72235 * 6 5 4 35 35 H 1.07997 * 119.98711 * 180.25982 * 7 6 5 36 36 H 1.07994 * 120.01414 * 179.76315 * 8 7 6 37 37 H 1.09000 * 109.47551 * 299.99720 * 13 11 2 38 38 H 1.09000 * 109.47390 * 60.00017 * 13 11 2 39 39 H 1.08999 * 109.46362 * 294.17684 * 15 14 13 40 40 H 1.09008 * 109.46359 * 54.14110 * 15 14 13 41 41 H 1.09002 * 109.50110 * 299.24561 * 16 15 14 42 42 H 1.09000 * 109.50862 * 179.11632 * 16 15 14 43 43 H 1.09008 * 109.51897 * 62.24990 * 17 16 15 44 44 H 0.97001 * 120.00054 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.50317 * 297.71316 * 26 17 16 46 46 H 1.09005 * 109.50291 * 177.59150 * 26 17 16 47 47 H 1.08999 * 109.45771 * 305.85707 * 27 14 13 48 48 H 1.09004 * 109.46108 * 65.83234 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 1.4208 5 6 3.7110 1.5784 1.9694 6 6 3.9402 1.9721 3.2744 7 6 2.9097 2.5016 4.0291 8 6 1.6469 2.6280 3.4828 9 6 1.4148 2.2290 2.1771 10 9 0.1806 2.3525 1.6418 11 6 2.1390 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 7 2.3401 -3.5888 0.0005 15 6 3.1094 -3.6235 -1.2498 16 6 4.1893 -4.7037 -1.1562 17 6 3.5263 -6.0610 -0.9052 18 6 4.5869 -7.1206 -0.7530 19 1 4.6601 -7.6833 0.1659 20 6 5.4641 -7.3717 -1.7867 21 7 5.3748 -6.6867 -2.9058 22 14 6.7792 -8.6846 -1.5977 23 1 6.2459 -9.9900 -2.0632 24 1 7.9664 -8.3167 -2.4103 25 1 7.1708 -8.7909 -0.1692 26 6 2.6925 -5.9836 0.3766 27 6 1.6560 -4.8662 0.2386 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6084 2.0284 -0.5140 32 1 3.1499 1.1384 -0.5138 33 1 4.5175 1.1681 1.3798 34 1 4.9259 1.8695 3.7037 35 1 3.0910 2.8127 5.0473 36 1 0.8412 3.0381 4.0736 37 1 0.7585 -2.5299 0.8903 38 1 0.7592 -2.5303 -0.8897 39 1 2.4413 -3.8489 -2.0811 40 1 3.5791 -2.6537 -1.4143 41 1 4.8659 -4.4716 -0.3337 42 1 4.7500 -4.7398 -2.0903 43 1 2.8793 -6.3113 -1.7461 44 1 5.9916 -6.8635 -3.6332 45 1 3.3455 -5.7716 1.2232 46 1 2.1837 -6.9340 0.5378 47 1 1.0700 -4.7990 1.1552 48 1 0.9949 -5.0859 -0.5998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543811977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:00 Heat of formation + Delta-G solvation = -63.091610 kcal Electronic energy + Delta-G solvation = -29183.250610 eV Core-core repulsion = 25151.859719 eV Total energy + Delta-G solvation = -4031.390891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.00506 -41.25610 -39.96828 -39.18935 -36.67071 -35.67532 -33.52123 -32.83047 -31.46689 -31.43208 -29.42887 -28.15788 -27.22483 -25.82356 -23.78289 -23.72542 -23.34800 -22.53917 -20.37618 -20.15261 -18.68447 -18.43058 -18.06760 -17.45137 -17.31957 -17.15896 -16.71026 -16.48194 -16.31817 -15.95243 -15.51406 -15.19179 -15.07256 -14.78576 -14.44335 -14.39844 -14.29199 -14.07418 -13.88468 -13.74919 -13.47757 -13.21285 -13.03889 -12.87465 -12.86322 -12.78250 -12.54556 -12.41965 -12.34215 -12.01339 -11.99233 -11.85726 -11.35675 -10.98530 -10.80535 -10.52430 -10.36259 -9.96566 -9.79650 -9.58150 -9.16544 -8.07361 -6.20749 0.11793 0.23950 1.39863 1.41340 1.51675 1.64297 1.95053 2.43974 2.67480 3.06544 3.19398 3.22903 3.58333 3.65651 3.79421 4.02901 4.12529 4.21545 4.24220 4.27977 4.32064 4.36255 4.40157 4.48864 4.50293 4.56017 4.60666 4.73704 4.78010 4.89624 4.91709 4.93441 5.01556 5.09860 5.10968 5.18089 5.23446 5.33431 5.38261 5.46301 5.48296 5.59269 5.62684 5.93277 5.98195 6.00654 6.15569 6.29034 6.41445 6.42871 6.91186 7.23299 7.46686 8.97428 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.002531 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.073268 B =11058.542539 C =11616.489940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.612 5.612 3 C 0.156 3.844 4 C -0.149 4.149 5 C -0.087 4.087 6 C -0.136 4.136 7 C -0.086 4.086 8 C -0.158 4.158 9 C 0.096 3.904 10 F -0.136 7.136 11 C 0.510 3.490 12 O -0.555 6.555 13 C 0.040 3.960 14 N -0.535 5.535 15 C 0.073 3.927 16 C -0.089 4.089 17 C 0.045 3.955 18 C -0.532 4.532 19 H 0.052 0.948 20 C 0.009 3.991 21 N -0.919 5.919 22 Si 0.955 3.045 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.269 1.269 26 C -0.100 4.100 27 C 0.068 3.932 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.013 0.987 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.056 0.944 43 H -0.008 1.008 44 H 0.259 0.741 45 H 0.046 0.954 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.512 22.226 11.609 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.346 5.346 3 C 0.033 3.967 4 C -0.151 4.151 5 C -0.105 4.105 6 C -0.154 4.154 7 C -0.104 4.104 8 C -0.177 4.177 9 C 0.077 3.923 10 F -0.114 7.114 11 C 0.298 3.702 12 O -0.432 6.432 13 C -0.090 4.090 14 N -0.260 5.260 15 C -0.055 4.055 16 C -0.128 4.128 17 C 0.026 3.974 18 C -0.571 4.571 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.559 5.559 22 Si 0.780 3.220 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.138 4.138 27 C -0.059 4.059 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.175 0.825 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.010 0.990 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.532 22.304 11.775 28.163 hybrid contribution 0.343 -0.925 -1.200 1.553 sum -12.189 21.379 10.575 26.785 Atomic orbital electron populations 1.22334 0.77225 1.05336 1.03486 1.47972 1.08271 1.04617 1.73769 1.20260 0.98706 0.85486 0.92215 1.20324 0.93880 1.02811 0.98114 1.21160 0.95963 0.97153 0.96269 1.21538 1.01089 0.99003 0.93743 1.21412 0.91262 0.96589 1.01143 1.21445 0.99826 1.02928 0.93476 1.17644 0.79556 1.01950 0.93172 1.91361 1.40091 1.93708 1.86267 1.20987 0.87885 0.86029 0.75254 1.90673 1.15678 1.87369 1.49525 1.22063 0.94096 0.88389 1.04480 1.61593 1.25270 1.03137 1.36006 1.22037 0.95441 0.99480 0.88539 1.21345 0.96644 0.94710 1.00053 1.18668 0.93532 0.92594 0.92607 1.21600 1.15768 1.19448 1.00244 0.93017 1.25791 0.99710 0.98373 0.95066 1.70032 1.38672 1.41889 1.05295 0.85606 0.78723 0.79483 0.78156 1.19846 1.21025 1.19385 1.21539 0.97025 0.96764 0.98438 1.22108 0.95075 0.87971 1.00785 0.91019 0.89756 0.88936 0.87514 0.90249 0.86126 0.83739 0.82041 0.82540 0.85503 0.90582 0.96865 0.91561 0.96151 0.92532 0.99021 0.93162 0.93541 0.92088 0.88557 0.95040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 10.22 127.77 1.31 2.14 16 2 N -0.61 -13.70 2.86 -851.13 -2.43 -16.13 16 3 C 0.16 3.32 5.27 85.63 0.45 3.77 16 4 C -0.15 -3.15 5.47 -19.82 -0.11 -3.26 16 5 C -0.09 -1.90 9.67 22.26 0.22 -1.68 16 6 C -0.14 -2.31 10.04 22.27 0.22 -2.09 16 7 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 8 C -0.16 -2.29 10.03 22.31 0.22 -2.07 16 9 C 0.10 1.76 7.25 22.38 0.16 1.92 16 10 F -0.14 -2.31 13.82 44.97 0.62 -1.69 16 11 C 0.51 15.31 7.35 87.66 0.64 15.96 16 12 O -0.56 -21.82 13.91 -3.02 -0.04 -21.86 16 13 C 0.04 1.09 4.00 85.56 0.34 1.44 16 14 N -0.53 -19.82 4.40 -900.92 -3.96 -23.78 16 15 C 0.07 3.20 5.10 86.33 0.44 3.64 16 16 C -0.09 -4.72 5.13 30.65 0.16 -4.57 16 17 C 0.04 2.37 2.16 -11.46 -0.02 2.34 16 18 C -0.53 -30.94 8.56 25.60 0.22 -30.72 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.01 0.51 5.31 84.66 0.45 0.96 16 21 N -0.92 -55.71 11.37 21.45 0.24 -55.46 16 22 Si 0.95 45.58 29.54 68.60 2.03 47.61 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 C -0.10 -4.30 5.32 30.65 0.16 -4.14 16 27 C 0.07 2.34 5.46 86.33 0.47 2.81 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.02 6.44 -2.38 -0.02 1.00 16 30 H 0.09 1.24 4.93 -2.39 -0.01 1.22 16 31 H 0.11 1.75 8.01 -2.39 -0.02 1.73 16 32 H 0.08 1.98 7.23 -2.39 -0.02 1.96 16 33 H 0.12 2.96 8.00 -2.91 -0.02 2.94 16 34 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.13 2.65 7.25 -2.39 -0.02 2.63 16 38 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 3.02 5.78 -2.38 -0.01 3.01 16 41 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 3.35 6.18 -2.39 -0.01 3.33 16 43 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 47 H 0.10 2.62 8.02 -2.39 -0.02 2.60 16 48 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.76 380.73 2.97 -70.80 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.95 Total: 15.01 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 5.56 Total: -14.48 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -6.15 Total: -95.38 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.04 Total: -21.86 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.62 Total: -1.69 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.76 2.97 -70.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543811977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.707 kcal (2) G-P(sol) polarization free energy of solvation -73.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds