Wall clock time and date at job start Tue Mar 31 2020 18:54:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42905 * 114.00294 * 2 1
4 4 C 1.53001 * 109.47432 * 179.97438 * 3 2 1
5 5 N 1.46503 * 109.46873 * 65.00243 * 4 3 2
6 6 C 1.46497 * 120.00187 * 270.00274 * 5 4 3
7 7 C 1.50702 * 109.46876 * 274.33686 * 6 5 4
8 8 H 1.08006 * 119.99761 * 0.02562 * 7 6 5
9 9 C 1.37879 * 120.00130 * 179.97438 * 7 6 5
10 10 N 1.31511 * 120.00054 * 0.02562 * 9 7 6
11 11 Si 1.86806 * 119.99873 * 180.02562 * 9 7 6
12 12 H 1.48492 * 109.47316 * 0.02562 * 11 9 7
13 13 H 1.48496 * 109.46984 * 120.00523 * 11 9 7
14 14 H 1.48501 * 109.46690 * 240.00138 * 11 9 7
15 15 C 1.34777 * 119.99768 * 89.99499 * 5 4 3
16 16 O 1.21276 * 120.00457 * 355.93145 * 15 5 4
17 17 C 1.50706 * 119.99779 * 175.92704 * 15 5 4
18 18 C 1.53116 * 109.52095 * 155.77788 * 17 15 5
19 19 C 1.53041 * 109.27734 * 177.56238 * 18 17 15
20 20 N 1.46847 * 109.52023 * 300.82040 * 19 18 17
21 21 C 1.46903 * 110.99874 * 185.84045 * 20 19 18
22 22 C 1.52995 * 109.47273 * 76.33194 * 21 20 19
23 23 F 1.39905 * 109.46972 * 294.06404 * 22 21 20
24 24 F 1.39901 * 109.47298 * 54.06235 * 22 21 20
25 25 C 1.46847 * 111.19837 * 61.74372 * 20 19 18
26 26 C 1.53035 * 109.52587 * 298.25708 * 25 20 19
27 27 H 1.09005 * 109.47099 * 60.00117 * 1 2 3
28 28 H 1.09005 * 109.46988 * 179.97438 * 1 2 3
29 29 H 1.09003 * 109.47164 * 300.00185 * 1 2 3
30 30 H 1.09000 * 109.46618 * 60.00102 * 3 2 1
31 31 H 1.08996 * 109.47155 * 300.00204 * 3 2 1
32 32 H 1.08998 * 109.47162 * 305.00279 * 4 3 2
33 33 H 1.08998 * 109.47249 * 184.99766 * 4 3 2
34 34 H 1.09002 * 109.46900 * 34.33231 * 6 5 4
35 35 H 1.08998 * 109.47616 * 154.34079 * 6 5 4
36 36 H 0.96995 * 120.00022 * 179.97438 * 10 9 7
37 37 H 1.09004 * 109.52249 * 35.65242 * 17 15 5
38 38 H 1.09004 * 109.50408 * 57.62442 * 18 17 15
39 39 H 1.09000 * 109.50639 * 297.50041 * 18 17 15
40 40 H 1.09004 * 109.46075 * 180.80993 * 19 18 17
41 41 H 1.08998 * 109.45388 * 60.83151 * 19 18 17
42 42 H 1.09003 * 109.47165 * 316.32974 * 21 20 19
43 43 H 1.09007 * 109.47023 * 196.33257 * 21 20 19
44 44 H 1.09001 * 109.47517 * 174.06379 * 22 21 20
45 45 H 1.09001 * 109.45929 * 58.27378 * 25 20 19
46 46 H 1.08998 * 109.46390 * 178.23866 * 25 20 19
47 47 H 1.09002 * 109.50048 * 299.23970 * 26 25 20
48 48 H 1.08995 * 109.50347 * 179.11940 * 26 25 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 0.0006
5 7 3.9767 0.5640 -1.2509
6 6 4.1062 -0.8925 -1.3405
7 6 5.4659 -1.3075 -0.8404
8 1 6.1636 -0.5609 -0.4905
9 6 5.8189 -2.6403 -0.8286
10 7 4.9692 -3.5493 -1.2542
11 14 7.5041 -3.1547 -0.2081
12 1 8.2657 -1.9510 0.2115
13 1 7.3467 -4.0694 0.9510
14 1 8.2392 -3.8528 -1.2933
15 6 4.2632 1.3330 -2.3200
16 8 4.0856 2.5317 -2.2700
17 6 4.8045 0.7034 -3.5778
18 6 4.4863 1.6007 -4.7769
19 6 5.0908 0.9868 -6.0418
20 7 6.5442 0.8560 -5.8774
21 6 7.1758 0.3992 -7.1226
22 6 7.2556 1.5641 -8.1112
23 9 5.9634 1.9430 -8.4908
24 9 7.8998 2.6476 -7.5042
25 6 6.8739 -0.0391 -4.7609
26 6 6.3226 0.5441 -3.4579
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8900
30 1 1.6886 1.8463 0.8900
31 1 1.6886 1.8464 -0.8899
32 1 3.8508 0.5685 0.8426
33 1 3.9785 2.1765 0.0902
34 1 3.3354 -1.3639 -0.7308
35 1 3.9900 -1.2045 -2.3783
36 1 5.2176 -4.4869 -1.2463
37 1 4.3450 -0.2744 -3.7224
38 1 4.9121 2.5908 -4.6137
39 1 3.4057 1.6832 -4.8932
40 1 4.8784 1.6307 -6.8953
41 1 4.6545 0.0026 -6.2118
42 1 6.5828 -0.4058 -7.5567
43 1 8.1807 0.0353 -6.9080
44 1 7.8173 1.2549 -8.9927
45 1 6.4292 -1.0185 -4.9373
46 1 7.9564 -0.1404 -4.6841
47 1 6.7772 1.5176 -3.2739
48 1 6.5539 -0.1282 -2.6317
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000588459390.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:54:30
Heat of formation + Delta-G solvation = -203.300188 kcal
Electronic energy + Delta-G solvation = -31034.340242 eV
Core-core repulsion = 26566.100226 eV
Total energy + Delta-G solvation = -4468.240016 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.186 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-49.74277 -47.76049 -41.30626 -39.46603 -38.62184 -36.63881 -34.93605 -34.47680
-31.85651 -31.43932 -30.01027 -28.86182 -27.23536 -25.87909 -24.82359 -24.19654
-23.70435 -22.82455 -21.02756 -19.80055 -18.55587 -18.39490 -18.17145 -18.10297
-17.51010 -17.22123 -17.05447 -16.71206 -16.36470 -16.06089 -15.99048 -15.82233
-15.27091 -15.05499 -14.81677 -14.58266 -14.36605 -14.23723 -14.12724 -13.93466
-13.55681 -13.36944 -13.25282 -13.16055 -13.07095 -12.94338 -12.78318 -12.68255
-12.63421 -12.41301 -12.16342 -12.07329 -11.94526 -11.71003 -11.65087 -11.45961
-11.15161 -10.68632 -10.57815 -10.34674 -9.41585 -9.35755 -8.13401 -6.25559
1.41926 1.46202 1.55934 1.76077 2.31535 2.47795 2.73687 2.92777
3.11817 3.17029 3.50517 3.64986 3.72909 3.85662 3.92108 4.13381
4.16746 4.17454 4.26227 4.29908 4.38050 4.44220 4.50387 4.51457
4.54179 4.59640 4.63353 4.63975 4.69086 4.81669 4.83292 4.89757
4.95615 4.99669 5.05326 5.11239 5.33236 5.35444 5.43311 5.72228
5.89089 6.00265 6.04306 6.13731 6.27481 6.64655 6.88069 7.33952
7.46503 8.92793
Molecular weight = 334.19amu
Principal moments of inertia in cm(-1)
A = 0.009914 B = 0.004163 C = 0.003223
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2823.716394 B = 6724.647501 C = 8686.498208
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.409 6.409
3 C 0.057 3.943
4 C 0.116 3.884
5 N -0.590 5.590
6 C 0.259 3.741
7 C -0.531 4.531
8 H 0.055 0.945
9 C 0.025 3.975
10 N -0.920 5.920
11 Si 0.949 3.051
12 H -0.269 1.269
13 H -0.284 1.284
14 H -0.275 1.275
15 C 0.514 3.486
16 O -0.596 6.596
17 C -0.095 4.095
18 C -0.089 4.089
19 C 0.051 3.949
20 N -0.547 5.547
21 C -0.004 4.004
22 C 0.263 3.737
23 F -0.220 7.220
24 F -0.216 7.216
25 C 0.070 3.930
26 C -0.101 4.101
27 H 0.041 0.959
28 H 0.089 0.911
29 H 0.058 0.942
30 H 0.081 0.919
31 H 0.038 0.962
32 H 0.081 0.919
33 H 0.090 0.910
34 H 0.023 0.977
35 H 0.023 0.977
36 H 0.265 0.735
37 H 0.082 0.918
38 H 0.062 0.938
39 H 0.064 0.936
40 H 0.098 0.902
41 H 0.038 0.962
42 H 0.081 0.919
43 H 0.122 0.878
44 H 0.159 0.841
45 H 0.036 0.964
46 H 0.093 0.907
47 H 0.055 0.945
48 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.749 5.358 -10.197 11.544
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.328 6.328
3 C -0.021 4.021
4 C -0.008 4.008
5 N -0.319 5.319
6 C 0.138 3.862
7 C -0.569 4.569
8 H 0.073 0.927
9 C -0.175 4.175
10 N -0.560 5.560
11 Si 0.775 3.225
12 H -0.193 1.193
13 H -0.210 1.210
14 H -0.201 1.201
15 C 0.304 3.696
16 O -0.479 6.479
17 C -0.116 4.116
18 C -0.127 4.127
19 C -0.076 4.076
20 N -0.272 5.272
21 C -0.132 4.132
22 C 0.210 3.790
23 F -0.201 7.201
24 F -0.198 7.198
25 C -0.057 4.057
26 C -0.140 4.140
27 H 0.059 0.941
28 H 0.108 0.892
29 H 0.076 0.924
30 H 0.099 0.901
31 H 0.057 0.943
32 H 0.099 0.901
33 H 0.108 0.892
34 H 0.041 0.959
35 H 0.041 0.959
36 H 0.074 0.926
37 H 0.100 0.900
38 H 0.080 0.920
39 H 0.083 0.917
40 H 0.116 0.884
41 H 0.056 0.944
42 H 0.099 0.901
43 H 0.140 0.860
44 H 0.176 0.824
45 H 0.054 0.946
46 H 0.111 0.889
47 H 0.074 0.926
48 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 0.902 6.081 -10.044 11.776
hybrid contribution -0.088 -1.025 0.559 1.171
sum 0.814 5.056 -9.484 10.779
Atomic orbital electron populations
1.22873 0.80038 1.03341 1.00589 1.88006 1.21139 1.28238 1.95466
1.22912 0.93738 0.84724 1.00711 1.21472 0.92841 0.99210 0.87232
1.48179 1.63560 1.09049 1.11133 1.19080 0.96128 0.74103 0.96850
1.21606 1.00303 0.92292 1.42743 0.92718 1.25559 1.00261 0.96389
0.95258 1.70039 1.36760 1.01595 1.47580 0.85640 0.80410 0.78292
0.78170 1.19319 1.21003 1.20075 1.20901 0.76643 0.86274 0.85793
1.90544 1.56873 1.16086 1.84402 1.21245 0.98222 0.99779 0.92382
1.21345 1.00054 0.98690 0.92638 1.22379 0.86839 1.00140 0.98251
1.61899 1.10495 1.50269 1.04526 1.23401 1.03643 0.95739 0.90453
1.22529 0.77024 0.83070 0.96406 1.92865 1.42250 1.92875 1.92153
1.92960 1.81476 1.59244 1.86107 1.21990 1.01188 0.93144 0.89365
1.21500 0.92037 1.01585 0.98837 0.94069 0.89235 0.92369 0.90117
0.94347 0.90102 0.89184 0.95877 0.95911 0.92561 0.90029 0.91968
0.91722 0.88370 0.94376 0.90108 0.85963 0.82434 0.94592 0.88912
0.92589 0.90030
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.73 11.01 113.37 1.25 1.98 16
2 O -0.41 -14.94 9.46 -148.98 -1.41 -16.35 16
3 C 0.06 1.89 6.28 71.98 0.45 2.34 16
4 C 0.12 4.42 5.80 86.38 0.50 4.92 16
5 N -0.59 -25.74 2.42 -826.15 -2.00 -27.74 16
6 C 0.26 12.67 4.87 85.63 0.42 13.08 16
7 C -0.53 -27.08 7.38 25.60 0.19 -26.89 16
8 H 0.05 2.83 7.66 -2.91 -0.02 2.80 16
9 C 0.03 1.31 5.46 84.66 0.46 1.77 16
10 N -0.92 -50.38 13.29 21.45 0.28 -50.10 16
11 Si 0.95 40.97 29.54 68.60 2.03 42.99 16
12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16
13 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
14 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16
15 C 0.51 22.20 6.79 87.66 0.60 22.80 16
16 O -0.60 -27.48 15.66 -3.02 -0.05 -27.52 16
17 C -0.10 -3.65 1.94 -11.46 -0.02 -3.67 16
18 C -0.09 -3.01 4.95 30.65 0.15 -2.86 16
19 C 0.05 1.45 5.23 86.33 0.45 1.90 16
20 N -0.55 -14.68 4.40 -896.35 -3.95 -18.62 16
21 C 0.00 -0.07 5.38 86.30 0.46 0.40 16
22 C 0.26 4.48 5.58 71.98 0.40 4.88 16
23 F -0.22 -4.79 14.66 44.97 0.66 -4.13 16
24 F -0.22 -5.25 17.15 44.97 0.77 -4.47 16
25 C 0.07 2.08 5.42 86.33 0.47 2.55 16
26 C -0.10 -3.72 5.36 30.64 0.16 -3.55 16
27 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16
28 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16
29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.08 3.14 8.07 -2.39 -0.02 3.12 16
33 H 0.09 3.30 7.48 -2.39 -0.02 3.28 16
34 H 0.02 1.25 7.05 -2.39 -0.02 1.23 16
35 H 0.02 1.18 5.75 -2.39 -0.01 1.16 16
36 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16
37 H 0.08 3.33 5.98 -2.39 -0.01 3.31 16
38 H 0.06 2.32 7.79 -2.38 -0.02 2.30 16
39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16
40 H 0.10 2.62 5.44 -2.38 -0.01 2.61 16
41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.08 1.26 7.99 -2.39 -0.02 1.24 16
43 H 0.12 1.72 7.78 -2.38 -0.02 1.70 16
44 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16
45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
46 H 0.09 2.40 7.93 -2.39 -0.02 2.38 16
47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
48 H 0.08 3.40 5.79 -2.39 -0.01 3.38 16
Total: -1.00 -65.66 383.79 3.23 -62.43
By element:
Atomic # 1 Polarization: 22.91 SS G_CDS: 0.95 Total: 23.86 kcal
Atomic # 6 Polarization: 13.72 SS G_CDS: 5.94 Total: 19.66 kcal
Atomic # 7 Polarization: -90.80 SS G_CDS: -5.66 Total: -96.46 kcal
Atomic # 8 Polarization: -42.42 SS G_CDS: -1.46 Total: -43.88 kcal
Atomic # 9 Polarization: -10.04 SS G_CDS: 1.43 Total: -8.61 kcal
Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal
Total: -65.66 3.23 -62.43 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588459390.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -140.868 kcal
(2) G-P(sol) polarization free energy of solvation -65.664 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.532 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) -203.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds