Wall clock time and date at job start Tue Mar 31 2020 18:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47033 * 2 1 4 4 C 1.37476 * 127.17620 * 83.13555 * 3 2 1 5 5 C 1.47984 * 126.47056 * 0.27394 * 4 3 2 6 6 C 1.41018 * 126.25911 * 16.57777 * 5 4 3 7 7 N 1.30636 * 108.08193 * 179.81925 * 6 5 4 8 8 N 1.40001 * 108.58938 * 0.44278 * 7 6 5 9 9 C 1.46498 * 125.86835 * 179.71323 * 8 7 6 10 10 C 1.34813 * 108.25925 * 359.71292 * 8 7 6 11 11 N 1.31212 * 107.05539 * 180.02562 * 4 3 2 12 12 N 1.28509 * 109.96535 * 0.02562 * 11 4 3 13 13 C 1.31219 * 110.10067 * 0.02562 * 12 11 4 14 14 N 1.38570 * 126.38017 * 180.02562 * 13 12 11 15 15 C 1.46906 * 110.99592 * 243.54761 * 14 13 12 16 16 C 1.50696 * 109.47228 * 61.18442 * 15 14 13 17 17 H 1.07992 * 120.00097 * 4.63894 * 16 15 14 18 18 C 1.37882 * 119.99675 * 184.63392 * 16 15 14 19 19 N 1.31506 * 120.00113 * 5.01079 * 18 16 15 20 20 Si 1.86804 * 119.99668 * 185.00729 * 18 16 15 21 21 H 1.48494 * 109.47119 * 5.00371 * 20 18 16 22 22 H 1.48494 * 109.47117 * 125.00562 * 20 18 16 23 23 H 1.48497 * 109.46989 * 245.00615 * 20 18 16 24 24 C 1.46893 * 111.00266 * 7.50030 * 14 13 12 25 25 C 1.53001 * 109.47128 * 161.91305 * 24 14 13 26 26 O 1.42899 * 109.47240 * 67.01092 * 25 24 14 27 27 C 1.42908 * 113.99635 * 184.92942 * 26 25 24 28 28 H 1.09001 * 109.46634 * 292.93329 * 1 2 3 29 29 H 1.09004 * 109.47256 * 52.93038 * 1 2 3 30 30 H 1.09003 * 109.46776 * 172.93298 * 1 2 3 31 31 H 1.08995 * 109.47193 * 240.00646 * 2 1 3 32 32 H 1.08996 * 109.47144 * 120.00168 * 2 1 3 33 33 H 1.07997 * 125.95674 * 359.97438 * 6 5 4 34 34 H 1.09003 * 109.47084 * 270.00135 * 9 8 7 35 35 H 1.09002 * 109.46979 * 30.00184 * 9 8 7 36 36 H 1.09001 * 109.46747 * 150.00022 * 9 8 7 37 37 H 1.07997 * 126.21339 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47158 * 181.19152 * 15 14 13 39 39 H 1.09004 * 109.46999 * 301.18265 * 15 14 13 40 40 H 0.97006 * 119.99631 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.47188 * 281.90711 * 24 14 13 42 42 H 1.08997 * 109.47589 * 41.90935 * 24 14 13 43 43 H 1.09008 * 109.46887 * 187.00936 * 25 24 14 44 44 H 1.08998 * 109.46781 * 307.00740 * 25 24 14 45 45 H 1.09000 * 109.47047 * 304.97035 * 27 26 25 46 46 H 1.08993 * 109.47250 * 64.97468 * 27 26 25 47 47 H 1.09004 * 109.46795 * 184.97177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1718 2.2081 1.0875 5 6 1.8783 1.8700 2.4980 6 6 1.7059 0.5740 3.0265 7 7 1.4660 0.6863 4.3057 8 7 1.4650 2.0454 4.6419 9 6 1.2288 2.5990 5.9775 10 6 1.7188 2.7569 3.5253 11 7 2.6328 3.3519 0.6393 12 7 2.7756 3.2977 -0.6366 13 6 2.4144 2.1171 -1.0811 14 7 2.4330 1.6947 -2.4007 15 6 1.0758 1.3956 -2.8768 16 6 0.2322 2.6423 -2.8055 17 1 0.6796 3.5810 -2.5143 18 6 -1.1109 2.5843 -3.1120 19 7 -1.6769 1.4258 -3.3706 20 14 -2.1264 4.1514 -3.1599 21 1 -1.2381 5.3234 -2.9536 22 1 -2.7983 4.2657 -4.4792 23 1 -3.1500 4.1109 -2.0849 24 6 3.0860 2.6890 -3.2626 25 6 3.4934 2.0308 -4.5824 26 8 2.3217 1.6670 -5.3150 27 6 2.5895 0.9422 -6.5171 28 1 -0.3632 0.4005 0.9465 29 1 -0.3634 0.6195 -0.8200 30 1 -0.3633 -1.0199 -0.1264 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.7647 -0.3503 2.4711 34 1 0.1630 2.7846 6.1107 35 1 1.5710 1.8893 6.7307 36 1 1.7769 3.5351 6.0848 37 1 1.7837 3.8327 3.4552 38 1 1.1214 1.0462 -3.9083 39 1 0.6334 0.6211 -2.2502 40 1 -2.6219 1.3850 -3.5859 41 1 2.3937 3.5068 -3.4631 42 1 3.9725 3.0779 -2.7617 43 1 4.0863 2.7317 -5.1701 44 1 4.0846 1.1386 -4.3761 45 1 3.2776 1.5135 -7.1401 46 1 3.0373 -0.0200 -6.2692 47 1 1.6576 0.7804 -7.0591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589638515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:21 Heat of formation + Delta-G solvation = 137.636874 kcal Electronic energy + Delta-G solvation = -30243.796150 eV Core-core repulsion = 26273.322212 eV Total energy + Delta-G solvation = -3970.473938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13485 -41.01492 -37.90708 -36.14167 -35.12143 -33.36604 -32.53429 -31.15709 -30.01030 -29.36839 -28.35275 -27.00069 -26.17499 -25.48475 -23.70882 -22.93237 -22.12791 -21.61077 -20.98823 -19.74170 -19.32723 -17.24340 -16.81823 -16.31917 -15.85075 -15.69890 -15.59763 -15.32671 -14.98319 -14.57785 -14.51030 -14.23739 -13.89784 -13.67042 -13.30476 -13.05521 -12.86714 -12.66960 -12.58206 -12.36339 -11.93048 -11.77736 -11.53729 -11.16628 -11.11825 -11.04532 -10.89394 -10.78877 -10.71718 -10.60699 -10.21527 -10.01869 -9.82433 -9.59005 -9.52470 -9.48006 -9.23199 -9.02546 -8.35323 -8.16721 -7.08441 -6.03435 -4.05775 1.68638 2.20725 2.36811 2.88562 3.24446 3.30750 3.38525 3.46821 3.83905 4.36387 4.36900 4.46527 4.69880 4.77332 4.89856 4.95686 4.96125 5.11867 5.19868 5.32327 5.48993 5.50343 5.54500 5.62200 5.68558 5.71399 5.77465 5.83450 5.90423 6.02755 6.06117 6.11726 6.19238 6.21917 6.44464 6.53012 6.75699 6.79115 6.85136 6.89192 7.20943 7.41212 7.58299 7.62955 7.71207 7.76188 7.93529 8.23080 8.27465 8.99310 9.56757 9.59415 11.03286 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.004039 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.288608 B = 6931.504884 C = 7832.434586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 N -0.471 5.471 4 C 0.231 3.769 5 C -0.148 4.148 6 C 0.061 3.939 7 N -0.295 5.295 8 N -0.375 5.375 9 C 0.103 3.897 10 C 0.097 3.903 11 N -0.286 5.286 12 N -0.343 5.343 13 C 0.417 3.583 14 N -0.463 5.463 15 C 0.172 3.828 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.890 5.890 20 Si 0.884 3.116 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.286 1.286 24 C 0.073 3.927 25 C 0.069 3.931 26 O -0.359 6.359 27 C 0.031 3.969 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.186 0.814 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.186 0.814 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -3.310 9.452 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.010 4.010 3 N -0.166 5.166 4 C -0.035 4.035 5 C -0.162 4.162 6 C -0.127 4.127 7 N -0.116 5.116 8 N -0.157 5.157 9 C -0.038 4.038 10 C -0.052 4.052 11 N -0.126 5.126 12 N -0.188 5.188 13 C 0.061 3.939 14 N -0.187 5.187 15 C 0.049 3.951 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.529 5.529 20 Si 0.712 3.288 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.213 1.213 24 C -0.055 4.055 25 C -0.008 4.008 26 O -0.277 6.277 27 C -0.066 4.066 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.203 0.797 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.203 0.797 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.745 -2.948 10.603 13.458 hybrid contribution -1.309 0.447 -1.009 1.713 sum 6.436 -2.501 9.594 11.821 Atomic orbital electron populations 1.22344 0.93316 1.03601 1.04484 1.21867 0.96461 0.79195 1.03484 1.45972 1.51213 1.13487 1.05924 1.21243 1.06180 0.88810 0.87257 1.17318 1.16958 0.92654 0.89267 1.24100 0.99071 0.97959 0.91533 1.77209 1.24568 0.94658 1.15146 1.48312 1.54860 1.04324 1.08179 1.21879 1.02740 0.99441 0.79750 1.22482 0.98633 0.98792 0.85300 1.74062 1.17067 1.17591 1.03907 1.74483 1.27201 1.14158 1.02952 1.22571 0.96111 0.86604 0.88573 1.59392 1.24124 1.39810 0.95377 1.20556 0.78751 0.97070 0.98744 1.21665 0.94211 0.95494 1.46155 0.92102 1.24781 0.97551 0.95735 0.94994 1.69926 1.11740 1.23521 1.47758 0.86654 0.80296 0.84451 0.77411 1.19688 1.20974 1.21287 1.21969 0.99417 0.93761 0.90317 1.22525 0.87946 0.98116 0.92238 1.88267 1.29632 1.74716 1.35126 1.22660 1.01316 0.94895 0.87752 0.92861 0.87933 0.91222 0.88392 0.90230 0.79718 0.90606 0.89250 0.89242 0.79745 0.90504 0.93908 0.93047 0.90575 0.89888 0.93389 0.93411 0.95072 0.94771 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.75 37.16 0.36 -2.74 16 2 C 0.11 1.81 5.48 -4.04 -0.02 1.78 16 3 N -0.47 -9.19 2.83 -114.61 -0.32 -9.51 16 4 C 0.23 4.49 7.91 -153.84 -1.22 3.27 16 5 C -0.15 -2.36 6.05 -105.42 -0.64 -3.00 16 6 C 0.06 0.87 11.17 -17.01 -0.19 0.68 16 7 N -0.30 -4.14 12.53 30.83 0.39 -3.75 16 8 N -0.38 -4.52 4.00 -67.84 -0.27 -4.79 16 9 C 0.10 0.72 11.46 59.85 0.69 1.40 16 10 C 0.10 1.31 11.45 -16.81 -0.19 1.12 16 11 N -0.29 -6.23 12.22 32.60 0.40 -5.83 16 12 N -0.34 -7.93 11.06 30.35 0.34 -7.59 16 13 C 0.42 9.15 6.02 -318.62 -1.92 7.23 16 14 N -0.46 -9.88 4.64 -175.82 -0.82 -10.70 16 15 C 0.17 4.14 4.66 -4.97 -0.02 4.12 16 16 C -0.54 -14.51 7.59 -34.44 -0.26 -14.78 16 17 H 0.06 1.76 6.56 -52.49 -0.34 1.42 16 18 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 19 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 20 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.07 1.44 4.91 -3.83 -0.02 1.42 16 25 C 0.07 1.16 6.24 37.16 0.23 1.39 16 26 O -0.36 -6.88 7.75 -35.23 -0.27 -7.15 16 27 C 0.03 0.45 11.01 101.05 1.11 1.56 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.10 2.30 6.20 -51.93 -0.32 1.97 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.56 7.68 -51.93 -0.40 1.17 16 32 H 0.08 1.01 5.11 -51.93 -0.27 0.74 16 33 H 0.19 2.21 5.45 -52.49 -0.29 1.92 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.19 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.08 1.97 5.29 -51.93 -0.27 1.70 16 39 H 0.04 1.06 4.03 -51.93 -0.21 0.85 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.08 1.73 6.26 -51.93 -0.32 1.40 16 42 H 0.08 1.55 7.53 -51.93 -0.39 1.16 16 43 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -34.15 380.21 -7.91 -42.05 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.60 Total: 3.33 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.18 Total: 5.34 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: 0.44 Total: -66.33 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.27 Total: -7.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.15 -7.91 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589638515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.687 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds