Wall clock time and date at job start Tue Mar 31 2020 18:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47033 * 2 1 4 4 C 1.37476 * 127.17620 * 83.13555 * 3 2 1 5 5 C 1.47984 * 126.47056 * 0.27394 * 4 3 2 6 6 C 1.41018 * 126.25911 * 16.57777 * 5 4 3 7 7 N 1.30636 * 108.08193 * 179.81925 * 6 5 4 8 8 N 1.40001 * 108.58938 * 0.44278 * 7 6 5 9 9 C 1.46498 * 125.86835 * 179.71323 * 8 7 6 10 10 C 1.34813 * 108.25925 * 359.71292 * 8 7 6 11 11 N 1.31212 * 107.05539 * 180.02562 * 4 3 2 12 12 N 1.28509 * 109.96535 * 0.02562 * 11 4 3 13 13 C 1.31219 * 110.10067 * 0.02562 * 12 11 4 14 14 N 1.38570 * 126.38017 * 180.02562 * 13 12 11 15 15 C 1.46906 * 110.99592 * 243.54761 * 14 13 12 16 16 C 1.50696 * 109.47228 * 61.18442 * 15 14 13 17 17 H 1.07992 * 120.00097 * 4.63894 * 16 15 14 18 18 C 1.37882 * 119.99675 * 184.63392 * 16 15 14 19 19 N 1.31506 * 120.00113 * 5.01079 * 18 16 15 20 20 Si 1.86804 * 119.99668 * 185.00729 * 18 16 15 21 21 H 1.48494 * 109.47119 * 5.00371 * 20 18 16 22 22 H 1.48494 * 109.47117 * 125.00562 * 20 18 16 23 23 H 1.48497 * 109.46989 * 245.00615 * 20 18 16 24 24 C 1.46893 * 111.00266 * 7.50030 * 14 13 12 25 25 C 1.53001 * 109.47128 * 161.91305 * 24 14 13 26 26 O 1.42899 * 109.47240 * 67.01092 * 25 24 14 27 27 C 1.42908 * 113.99635 * 184.92942 * 26 25 24 28 28 H 1.09001 * 109.46634 * 292.93329 * 1 2 3 29 29 H 1.09004 * 109.47256 * 52.93038 * 1 2 3 30 30 H 1.09003 * 109.46776 * 172.93298 * 1 2 3 31 31 H 1.08995 * 109.47193 * 240.00646 * 2 1 3 32 32 H 1.08996 * 109.47144 * 120.00168 * 2 1 3 33 33 H 1.07997 * 125.95674 * 359.97438 * 6 5 4 34 34 H 1.09003 * 109.47084 * 270.00135 * 9 8 7 35 35 H 1.09002 * 109.46979 * 30.00184 * 9 8 7 36 36 H 1.09001 * 109.46747 * 150.00022 * 9 8 7 37 37 H 1.07997 * 126.21339 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47158 * 181.19152 * 15 14 13 39 39 H 1.09004 * 109.46999 * 301.18265 * 15 14 13 40 40 H 0.97006 * 119.99631 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.47188 * 281.90711 * 24 14 13 42 42 H 1.08997 * 109.47589 * 41.90935 * 24 14 13 43 43 H 1.09008 * 109.46887 * 187.00936 * 25 24 14 44 44 H 1.08998 * 109.46781 * 307.00740 * 25 24 14 45 45 H 1.09000 * 109.47047 * 304.97035 * 27 26 25 46 46 H 1.08993 * 109.47250 * 64.97468 * 27 26 25 47 47 H 1.09004 * 109.46795 * 184.97177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1718 2.2081 1.0875 5 6 1.8783 1.8700 2.4980 6 6 1.7059 0.5740 3.0265 7 7 1.4660 0.6863 4.3057 8 7 1.4650 2.0454 4.6419 9 6 1.2288 2.5990 5.9775 10 6 1.7188 2.7569 3.5253 11 7 2.6328 3.3519 0.6393 12 7 2.7756 3.2977 -0.6366 13 6 2.4144 2.1171 -1.0811 14 7 2.4330 1.6947 -2.4007 15 6 1.0758 1.3956 -2.8768 16 6 0.2322 2.6423 -2.8055 17 1 0.6796 3.5810 -2.5143 18 6 -1.1109 2.5843 -3.1120 19 7 -1.6769 1.4258 -3.3706 20 14 -2.1264 4.1514 -3.1599 21 1 -1.2381 5.3234 -2.9536 22 1 -2.7983 4.2657 -4.4792 23 1 -3.1500 4.1109 -2.0849 24 6 3.0860 2.6890 -3.2626 25 6 3.4934 2.0308 -4.5824 26 8 2.3217 1.6670 -5.3150 27 6 2.5895 0.9422 -6.5171 28 1 -0.3632 0.4005 0.9465 29 1 -0.3634 0.6195 -0.8200 30 1 -0.3633 -1.0199 -0.1264 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.7647 -0.3503 2.4711 34 1 0.1630 2.7846 6.1107 35 1 1.5710 1.8893 6.7307 36 1 1.7769 3.5351 6.0848 37 1 1.7837 3.8327 3.4552 38 1 1.1214 1.0462 -3.9083 39 1 0.6334 0.6211 -2.2502 40 1 -2.6219 1.3850 -3.5859 41 1 2.3937 3.5068 -3.4631 42 1 3.9725 3.0779 -2.7617 43 1 4.0863 2.7317 -5.1701 44 1 4.0846 1.1386 -4.3761 45 1 3.2776 1.5135 -7.1401 46 1 3.0373 -0.0200 -6.2692 47 1 1.6576 0.7804 -7.0591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589638515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:20 Heat of formation + Delta-G solvation = 115.967001 kcal Electronic energy + Delta-G solvation = -30244.735827 eV Core-core repulsion = 26273.322212 eV Total energy + Delta-G solvation = -3971.413614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.67147 -42.09377 -39.40924 -37.67709 -36.55796 -34.62100 -34.28689 -32.41469 -31.46719 -30.82454 -29.85755 -28.26345 -27.48991 -26.92221 -25.18473 -24.54478 -23.68943 -22.90901 -22.09831 -21.13482 -20.80139 -18.82990 -18.36258 -17.72037 -17.34320 -17.16703 -16.92311 -16.59997 -16.31075 -16.13826 -15.90812 -15.65306 -15.25586 -14.94159 -14.78476 -14.43447 -14.04586 -13.87501 -13.61862 -13.56121 -13.34836 -13.23106 -13.09316 -12.93451 -12.73055 -12.58349 -12.44974 -12.27563 -12.25000 -11.96434 -11.95848 -11.90659 -11.58525 -11.15508 -11.00489 -10.80557 -10.59861 -10.48947 -10.22939 -9.66344 -8.68134 -8.13292 -6.20811 0.50877 0.98486 1.28506 1.32498 1.35732 1.43492 1.57243 1.78690 2.34704 2.39182 3.05413 3.12565 3.21702 3.36872 3.64015 3.72102 3.91542 4.11906 4.17838 4.20163 4.29370 4.34760 4.39713 4.47539 4.50365 4.55178 4.63197 4.64926 4.68276 4.71730 4.73623 4.82488 4.88382 4.95778 5.07876 5.16235 5.27017 5.28845 5.36756 5.49940 5.56721 5.82304 5.87425 5.94422 5.99849 6.19630 6.48802 6.53736 6.60473 6.89236 7.43656 7.97250 8.90529 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.004039 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.288608 B = 6931.504884 C = 7832.434586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.473 5.473 4 C 0.251 3.749 5 C -0.188 4.188 6 C 0.066 3.934 7 N -0.309 5.309 8 N -0.366 5.366 9 C 0.090 3.910 10 C 0.111 3.889 11 N -0.321 5.321 12 N -0.370 5.370 13 C 0.395 3.605 14 N -0.453 5.453 15 C 0.189 3.811 16 C -0.535 4.535 17 H 0.034 0.966 18 C 0.034 3.966 19 N -0.907 5.907 20 Si 0.929 3.071 21 H -0.284 1.284 22 H -0.274 1.274 23 H -0.283 1.283 24 C 0.075 3.925 25 C 0.075 3.925 26 O -0.400 6.400 27 C 0.028 3.972 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.202 0.798 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.203 0.797 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.262 0.738 41 H 0.039 0.961 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -4.117 11.021 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.168 5.168 4 C -0.016 4.016 5 C -0.202 4.202 6 C -0.122 4.122 7 N -0.130 5.130 8 N -0.146 5.146 9 C -0.049 4.049 10 C -0.041 4.041 11 N -0.161 5.161 12 N -0.215 5.215 13 C 0.038 3.962 14 N -0.177 5.177 15 C 0.065 3.935 16 C -0.575 4.575 17 H 0.053 0.947 18 C -0.166 4.166 19 N -0.547 5.547 20 Si 0.756 3.244 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.209 1.209 24 C -0.053 4.053 25 C -0.002 4.002 26 O -0.320 6.320 27 C -0.068 4.068 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.219 0.781 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.219 0.781 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.122 -3.763 12.202 15.133 hybrid contribution -1.428 0.734 -1.313 2.074 sum 6.694 -3.029 10.889 13.136 Atomic orbital electron populations 1.22187 0.94070 1.04026 1.02250 1.22118 0.95656 0.77871 1.05472 1.46210 1.50741 1.14508 1.05296 1.21838 1.03384 0.87882 0.88522 1.17441 1.20387 0.94338 0.88069 1.24281 0.98435 0.97878 0.91600 1.77189 1.24923 0.95892 1.14947 1.48747 1.52923 1.03617 1.09347 1.22350 1.04249 1.00817 0.77446 1.22776 0.96626 0.99460 0.85210 1.73976 1.19472 1.19170 1.03471 1.74363 1.28046 1.15137 1.03924 1.22696 0.97369 0.87010 0.89112 1.59414 1.22489 1.40290 0.95500 1.20212 0.79791 0.95510 0.97957 1.21704 0.94690 0.95522 1.45542 0.94730 1.25286 0.98397 0.97742 0.95218 1.69977 1.11958 1.24357 1.48418 0.85958 0.79001 0.81592 0.77801 1.20961 1.19886 1.20936 1.21987 0.98498 0.92841 0.91925 1.22532 0.87559 0.99240 0.90826 1.88181 1.31284 1.75564 1.36957 1.22811 1.01959 0.95539 0.86539 0.92722 0.93096 0.88620 0.88349 0.86260 0.78134 0.89231 0.88052 0.86510 0.78065 0.91728 0.94331 0.92882 0.94269 0.89164 0.90588 0.91748 0.92618 0.93384 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 9.75 71.98 0.70 -4.98 16 2 C 0.11 3.42 5.48 86.38 0.47 3.90 16 3 N -0.47 -18.50 2.83 -516.52 -1.46 -19.96 16 4 C 0.25 9.71 7.91 136.30 1.08 10.79 16 5 C -0.19 -5.74 6.05 -20.38 -0.12 -5.86 16 6 C 0.07 1.71 11.17 85.55 0.96 2.67 16 7 N -0.31 -7.87 12.53 -56.36 -0.71 -8.58 16 8 N -0.37 -7.81 4.00 -368.54 -1.47 -9.28 16 9 C 0.09 0.95 11.46 127.77 1.46 2.41 16 10 C 0.11 2.77 11.45 83.87 0.96 3.73 16 11 N -0.32 -14.26 12.22 -50.78 -0.62 -14.88 16 12 N -0.37 -17.68 11.06 -57.89 -0.64 -18.32 16 13 C 0.40 17.75 6.02 260.02 1.56 19.31 16 14 N -0.45 -19.81 4.64 -710.17 -3.30 -23.11 16 15 C 0.19 9.40 4.66 85.55 0.40 9.79 16 16 C -0.54 -30.01 7.59 25.60 0.19 -29.81 16 17 H 0.03 2.10 6.56 -2.91 -0.02 2.08 16 18 C 0.03 1.90 5.45 84.66 0.46 2.36 16 19 N -0.91 -51.47 13.29 21.45 0.28 -51.19 16 20 Si 0.93 46.12 29.54 68.60 2.03 48.15 16 21 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 24 C 0.08 3.05 4.91 86.30 0.42 3.47 16 25 C 0.08 2.48 6.24 71.98 0.45 2.93 16 26 O -0.40 -15.34 7.75 -148.98 -1.15 -16.49 16 27 C 0.03 0.77 11.01 113.37 1.25 2.02 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 2.31 6.20 -2.38 -0.01 2.29 16 30 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.10 3.07 7.68 -2.39 -0.02 3.05 16 32 H 0.12 2.72 5.11 -2.39 -0.01 2.71 16 33 H 0.20 4.26 5.45 -2.91 -0.02 4.24 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 37 H 0.20 4.22 8.06 -2.91 -0.02 4.19 16 38 H 0.07 3.40 5.29 -2.39 -0.01 3.39 16 39 H 0.04 1.95 4.03 -2.38 -0.01 1.94 16 40 H 0.26 14.21 8.31 -92.70 -0.77 13.43 16 41 H 0.04 1.87 6.26 -2.38 -0.01 1.85 16 42 H 0.09 3.46 7.53 -2.39 -0.02 3.44 16 43 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -76.67 380.21 4.20 -72.46 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.00 Total: 18.47 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 10.25 Total: 22.73 kcal Atomic # 7 Polarization: -137.40 SS G_CDS: -7.92 Total: -145.32 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.15 Total: -16.49 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -76.67 4.20 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589638515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.432 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds