Wall clock time and date at job start Tue Mar 31 2020 18:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46958 * 111.00431 * 2 1 4 4 C 1.53053 * 109.36420 * 176.80984 * 3 2 1 5 5 N 1.46955 * 109.36711 * 58.40074 * 4 3 2 6 6 C 1.46895 * 111.00057 * 176.81225 * 5 4 3 7 7 C 1.53002 * 109.47047 * 297.54584 * 6 5 4 8 8 C 1.53004 * 109.47203 * 180.02562 * 7 6 5 9 9 S 1.80998 * 109.47136 * 180.02562 * 8 7 6 10 10 C 1.76200 * 99.99959 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00023 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99855 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99767 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99984 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46961 * 89.99852 * 14 12 10 16 16 H 1.48501 * 109.46525 * 209.99920 * 14 12 10 17 17 H 1.48493 * 109.47047 * 329.99812 * 14 12 10 18 18 C 1.46958 * 110.87959 * 300.68028 * 5 4 3 19 19 H 1.09006 * 109.50641 * 299.34108 * 18 5 4 20 20 C 1.52997 * 109.49118 * 179.28719 * 18 5 4 21 21 C 1.50700 * 109.47510 * 176.92126 * 20 18 5 22 22 C 1.38233 * 120.00200 * 275.83919 * 21 20 18 23 23 C 1.38229 * 119.99824 * 179.80716 * 22 21 20 24 24 C 1.38236 * 120.00534 * 0.39664 * 23 22 21 25 25 C 1.38236 * 119.99524 * 359.85611 * 24 23 22 26 26 C 1.38232 * 120.00198 * 359.95743 * 25 24 23 27 27 C 1.46959 * 110.99990 * 236.19389 * 2 1 3 28 28 H 1.09002 * 109.47575 * 183.79725 * 1 2 3 29 29 H 1.08999 * 109.47551 * 303.80361 * 1 2 3 30 30 H 1.09011 * 109.46535 * 63.80114 * 1 2 3 31 31 H 1.08998 * 109.48639 * 296.77325 * 3 2 1 32 32 H 1.08996 * 109.49017 * 56.81851 * 3 2 1 33 33 H 1.08998 * 109.48564 * 178.36745 * 4 3 2 34 34 H 1.08996 * 109.49058 * 298.40917 * 4 3 2 35 35 H 1.09000 * 109.47245 * 57.54786 * 6 5 4 36 36 H 1.09004 * 109.46815 * 177.54926 * 6 5 4 37 37 H 1.09000 * 109.47264 * 300.00191 * 7 6 5 38 38 H 1.08999 * 109.47130 * 60.00009 * 7 6 5 39 39 H 1.09000 * 109.46892 * 300.00082 * 8 7 6 40 40 H 1.08999 * 109.47345 * 59.99804 * 8 7 6 41 41 H 0.96996 * 119.99997 * 180.02562 * 13 12 10 42 42 H 1.08998 * 109.47164 * 296.92396 * 20 18 5 43 43 H 1.09006 * 109.47006 * 56.92362 * 20 18 5 44 44 H 1.08006 * 119.99947 * 359.97438 * 22 21 20 45 45 H 1.08006 * 119.99765 * 180.22588 * 23 22 21 46 46 H 1.08000 * 120.00052 * 179.82975 * 24 23 22 47 47 H 1.08002 * 120.00138 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.00395 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.48744 * 63.22885 * 27 2 1 50 50 H 1.08998 * 109.49242 * 303.15969 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3289 0.0804 5 7 4.0502 0.5657 -1.0597 6 6 5.5191 0.5656 -1.0596 7 6 6.0292 1.9995 -1.2167 8 6 7.5593 1.9993 -1.2172 9 16 8.1627 3.6957 -1.4024 10 6 9.9006 3.4074 -1.3708 11 1 10.2793 2.4020 -1.2606 12 6 10.7830 4.4724 -1.4875 13 7 12.0814 4.2571 -1.4634 14 14 10.1280 6.2116 -1.6774 15 1 9.9549 6.8245 -0.3359 16 1 11.0898 7.0188 -2.4702 17 1 8.8187 6.1737 -2.3770 18 6 3.5234 -0.8063 -1.0597 19 1 3.8252 -1.3120 -0.1424 20 6 4.0769 -1.5656 -2.2671 21 6 3.5972 -2.9936 -2.2256 22 6 4.2786 -3.9300 -1.4708 23 6 3.8362 -5.2389 -1.4296 24 6 2.7172 -5.6134 -2.1496 25 6 2.0388 -4.6782 -2.9086 26 6 2.4789 -3.3683 -2.9467 27 6 1.9956 -0.7633 -1.1400 28 1 -0.3634 -1.0254 0.0681 29 1 -0.3634 0.5717 0.8539 30 1 -0.3633 0.4538 -0.9222 31 1 1.6939 1.8773 -0.9174 32 1 1.6011 1.9130 0.8600 33 1 3.9178 2.3446 0.0513 34 1 3.8253 0.8482 1.0108 35 1 5.8824 0.1517 -0.1189 36 1 5.8824 -0.0422 -1.8883 37 1 5.6660 2.4133 -2.1574 38 1 5.6659 2.6072 -0.3880 39 1 7.9228 1.5853 -0.2768 40 1 7.9223 1.3917 -2.0461 41 1 12.6980 5.0014 -1.5446 42 1 3.7288 -1.0919 -3.1850 43 1 5.1665 -1.5474 -2.2394 44 1 5.1551 -3.6383 -0.9112 45 1 4.3665 -5.9698 -0.8370 46 1 2.3732 -6.6368 -2.1196 47 1 1.1648 -4.9707 -3.4715 48 1 1.9487 -2.6375 -3.5393 49 1 1.6938 -0.2822 -2.0704 50 1 1.6012 -1.7791 -1.1109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593088898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:24 Heat of formation + Delta-G solvation = 23.309583 kcal Electronic energy + Delta-G solvation = -26225.961998 eV Core-core repulsion = 22764.530920 eV Total energy + Delta-G solvation = -3461.431078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.25213 -39.03891 -36.30987 -34.28317 -32.52178 -32.41763 -31.14542 -30.50581 -28.64675 -26.87078 -25.79303 -25.14786 -23.84590 -22.79223 -22.59395 -20.99799 -20.87539 -19.74341 -17.47174 -17.07746 -16.36302 -15.91577 -15.72798 -15.25853 -15.01256 -14.98432 -14.85866 -14.67559 -14.53403 -14.07181 -13.78313 -13.64493 -13.31607 -13.05747 -12.85058 -12.82744 -12.52125 -12.47859 -12.14581 -11.85557 -11.70891 -11.65060 -11.39443 -11.35566 -11.15807 -11.10145 -11.03917 -10.86946 -10.68883 -10.27088 -10.09444 -9.75424 -9.15807 -8.99646 -8.90299 -8.62428 -8.54825 -8.36237 -6.92895 -6.27450 -3.99434 1.10565 1.15811 3.01293 3.30642 3.46153 3.48161 3.56070 3.68524 3.82121 4.32536 4.51448 4.59367 4.69615 4.75137 4.77743 4.81321 4.86312 4.91081 5.03401 5.11035 5.12232 5.14932 5.17132 5.24856 5.29136 5.31466 5.33239 5.48074 5.53455 5.55415 5.58099 5.59630 5.64383 5.73786 5.77485 5.78789 5.83974 5.87585 5.98555 6.05319 6.22224 6.24992 6.27274 6.41606 6.49243 6.64159 6.74629 6.75265 6.76814 7.03425 7.05742 7.96419 8.45393 9.18557 10.82099 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.002406 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.058217 B =11633.432587 C =13204.570599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.054 3.946 5 N -0.535 5.535 6 C 0.055 3.945 7 C -0.097 4.097 8 C -0.081 4.081 9 S -0.216 6.216 10 C -0.501 4.501 11 H 0.088 0.912 12 C 0.091 3.909 13 N -0.882 5.882 14 Si 0.862 3.138 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.237 1.237 18 C 0.096 3.904 19 H 0.050 0.950 20 C -0.081 4.081 21 C -0.074 4.074 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.116 4.116 27 C 0.065 3.935 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.270 0.730 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.041 0.959 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 -16.213 0.311 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.072 4.072 4 C -0.074 4.074 5 N -0.260 5.260 6 C -0.074 4.074 7 C -0.136 4.136 8 C -0.230 4.230 9 S 0.012 5.988 10 C -0.649 4.649 11 H 0.106 0.894 12 C -0.117 4.117 13 N -0.519 5.519 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.161 1.161 18 C -0.013 4.013 19 H 0.068 0.932 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.138 4.138 26 C -0.134 4.134 27 C -0.064 4.064 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.059 0.941 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.323 -15.143 0.203 29.506 hybrid contribution 0.753 -0.400 0.098 0.858 sum -24.570 -15.542 0.300 29.075 Atomic orbital electron populations 1.22327 0.87296 1.02073 1.00497 1.62137 1.07706 1.14198 1.43077 1.22200 0.94884 0.89056 1.01051 1.22223 0.93826 0.99452 0.91944 1.62154 1.08142 1.12774 1.42901 1.22257 0.86029 0.98273 1.00800 1.21355 0.93768 0.95301 1.03188 1.23009 0.96671 0.99857 1.03508 1.84148 1.08828 1.09405 1.96405 1.22126 0.87055 0.98175 1.57524 0.89447 1.24804 0.94179 0.99283 0.93454 1.69938 1.01264 1.32538 1.48197 0.86666 0.80903 0.84105 0.79655 1.19405 1.20139 1.16137 1.21553 0.93949 0.88698 0.97084 0.93193 1.20760 1.01463 0.90611 0.99045 1.19857 0.95370 0.95429 0.96817 1.21091 1.00016 0.93137 0.99036 1.21152 0.96824 0.96220 0.99365 1.21134 0.96157 0.99449 0.97767 1.21130 0.99918 0.93432 0.99317 1.21076 0.96499 0.96232 0.99618 1.22224 0.94055 0.98354 0.91722 0.91512 0.91383 0.95642 0.93891 0.90354 0.89280 0.94004 0.94750 0.90157 0.90701 0.91566 0.91657 0.91402 0.91998 0.89991 0.89889 0.86097 0.86164 0.86332 0.86254 0.86172 0.94076 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.60 60.06 0.58 0.79 16 2 N -0.55 -5.50 4.97 -242.75 -1.21 -6.71 16 3 C 0.06 0.57 5.62 -3.77 -0.02 0.54 16 4 C 0.05 0.60 5.36 -3.77 -0.02 0.58 16 5 N -0.53 -6.26 4.55 -226.49 -1.03 -7.29 16 6 C 0.06 0.70 4.68 -3.83 -0.02 0.68 16 7 C -0.10 -1.48 5.06 -26.73 -0.14 -1.62 16 8 C -0.08 -1.57 5.67 37.16 0.21 -1.35 16 9 S -0.22 -5.26 19.41 -107.50 -2.09 -7.35 16 10 C -0.50 -14.60 10.04 30.94 0.31 -14.29 16 11 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 12 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 13 N -0.88 -26.90 13.97 55.49 0.78 -26.13 16 14 Si 0.86 21.64 27.74 -169.99 -4.72 16.93 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 18 C 0.10 1.00 2.04 -67.65 -0.14 0.87 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 20 C -0.08 -0.77 4.63 -27.88 -0.13 -0.90 16 21 C -0.07 -0.69 4.47 -104.62 -0.47 -1.15 16 22 C -0.11 -1.06 9.73 -39.59 -0.38 -1.44 16 23 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16 24 C -0.13 -1.00 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.12 -0.98 8.46 -39.58 -0.33 -1.32 16 27 C 0.06 0.64 4.47 -3.76 -0.02 0.62 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.02 0.20 8.14 -51.92 -0.42 -0.23 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 33 H 0.09 1.02 6.21 -51.93 -0.32 0.70 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.98 5.84 -51.93 -0.30 0.68 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.01 6.39 -51.93 -0.33 0.67 16 39 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 40 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 43 H 0.08 0.82 6.04 -51.93 -0.31 0.51 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.76 6.64 -51.93 -0.34 0.42 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -31.31 400.54 -12.88 -44.19 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.80 Total: -0.16 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.86 Total: -19.53 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -1.46 Total: -40.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.72 Total: 16.93 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -2.09 Total: -7.35 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.31 -12.88 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593088898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.504 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds