Wall clock time and date at job start Tue Mar 31 2020 18:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46958 * 111.00431 * 2 1 4 4 C 1.53053 * 109.36420 * 176.80984 * 3 2 1 5 5 N 1.46955 * 109.36711 * 58.40074 * 4 3 2 6 6 C 1.46895 * 111.00057 * 176.81225 * 5 4 3 7 7 C 1.53002 * 109.47047 * 297.54584 * 6 5 4 8 8 C 1.53004 * 109.47203 * 180.02562 * 7 6 5 9 9 S 1.80998 * 109.47136 * 180.02562 * 8 7 6 10 10 C 1.76200 * 99.99959 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00023 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99855 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99767 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99984 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46961 * 89.99852 * 14 12 10 16 16 H 1.48501 * 109.46525 * 209.99920 * 14 12 10 17 17 H 1.48493 * 109.47047 * 329.99812 * 14 12 10 18 18 C 1.46958 * 110.87959 * 300.68028 * 5 4 3 19 19 H 1.09006 * 109.50641 * 299.34108 * 18 5 4 20 20 C 1.52997 * 109.49118 * 179.28719 * 18 5 4 21 21 C 1.50700 * 109.47510 * 176.92126 * 20 18 5 22 22 C 1.38233 * 120.00200 * 275.83919 * 21 20 18 23 23 C 1.38229 * 119.99824 * 179.80716 * 22 21 20 24 24 C 1.38236 * 120.00534 * 0.39664 * 23 22 21 25 25 C 1.38236 * 119.99524 * 359.85611 * 24 23 22 26 26 C 1.38232 * 120.00198 * 359.95743 * 25 24 23 27 27 C 1.46959 * 110.99990 * 236.19389 * 2 1 3 28 28 H 1.09002 * 109.47575 * 183.79725 * 1 2 3 29 29 H 1.08999 * 109.47551 * 303.80361 * 1 2 3 30 30 H 1.09011 * 109.46535 * 63.80114 * 1 2 3 31 31 H 1.08998 * 109.48639 * 296.77325 * 3 2 1 32 32 H 1.08996 * 109.49017 * 56.81851 * 3 2 1 33 33 H 1.08998 * 109.48564 * 178.36745 * 4 3 2 34 34 H 1.08996 * 109.49058 * 298.40917 * 4 3 2 35 35 H 1.09000 * 109.47245 * 57.54786 * 6 5 4 36 36 H 1.09004 * 109.46815 * 177.54926 * 6 5 4 37 37 H 1.09000 * 109.47264 * 300.00191 * 7 6 5 38 38 H 1.08999 * 109.47130 * 60.00009 * 7 6 5 39 39 H 1.09000 * 109.46892 * 300.00082 * 8 7 6 40 40 H 1.08999 * 109.47345 * 59.99804 * 8 7 6 41 41 H 0.96996 * 119.99997 * 180.02562 * 13 12 10 42 42 H 1.08998 * 109.47164 * 296.92396 * 20 18 5 43 43 H 1.09006 * 109.47006 * 56.92362 * 20 18 5 44 44 H 1.08006 * 119.99947 * 359.97438 * 22 21 20 45 45 H 1.08006 * 119.99765 * 180.22588 * 23 22 21 46 46 H 1.08000 * 120.00052 * 179.82975 * 24 23 22 47 47 H 1.08002 * 120.00138 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.00395 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.48744 * 63.22885 * 27 2 1 50 50 H 1.08998 * 109.49242 * 303.15969 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3289 0.0804 5 7 4.0502 0.5657 -1.0597 6 6 5.5191 0.5656 -1.0596 7 6 6.0292 1.9995 -1.2167 8 6 7.5593 1.9993 -1.2172 9 16 8.1627 3.6957 -1.4024 10 6 9.9006 3.4074 -1.3708 11 1 10.2793 2.4020 -1.2606 12 6 10.7830 4.4724 -1.4875 13 7 12.0814 4.2571 -1.4634 14 14 10.1280 6.2116 -1.6774 15 1 9.9549 6.8245 -0.3359 16 1 11.0898 7.0188 -2.4702 17 1 8.8187 6.1737 -2.3770 18 6 3.5234 -0.8063 -1.0597 19 1 3.8252 -1.3120 -0.1424 20 6 4.0769 -1.5656 -2.2671 21 6 3.5972 -2.9936 -2.2256 22 6 4.2786 -3.9300 -1.4708 23 6 3.8362 -5.2389 -1.4296 24 6 2.7172 -5.6134 -2.1496 25 6 2.0388 -4.6782 -2.9086 26 6 2.4789 -3.3683 -2.9467 27 6 1.9956 -0.7633 -1.1400 28 1 -0.3634 -1.0254 0.0681 29 1 -0.3634 0.5717 0.8539 30 1 -0.3633 0.4538 -0.9222 31 1 1.6939 1.8773 -0.9174 32 1 1.6011 1.9130 0.8600 33 1 3.9178 2.3446 0.0513 34 1 3.8253 0.8482 1.0108 35 1 5.8824 0.1517 -0.1189 36 1 5.8824 -0.0422 -1.8883 37 1 5.6660 2.4133 -2.1574 38 1 5.6659 2.6072 -0.3880 39 1 7.9228 1.5853 -0.2768 40 1 7.9223 1.3917 -2.0461 41 1 12.6980 5.0014 -1.5446 42 1 3.7288 -1.0919 -3.1850 43 1 5.1665 -1.5474 -2.2394 44 1 5.1551 -3.6383 -0.9112 45 1 4.3665 -5.9698 -0.8370 46 1 2.3732 -6.6368 -2.1196 47 1 1.1648 -4.9707 -3.4715 48 1 1.9487 -2.6375 -3.5393 49 1 1.6938 -0.2822 -2.0704 50 1 1.6012 -1.7791 -1.1109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593088898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:22 Heat of formation + Delta-G solvation = 5.179469 kcal Electronic energy + Delta-G solvation = -26226.748179 eV Core-core repulsion = 22764.530920 eV Total energy + Delta-G solvation = -3462.217259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.04202 -39.73828 -37.22411 -35.14871 -34.68454 -33.61781 -31.75793 -31.24548 -29.57988 -27.96817 -27.59374 -26.28041 -24.78423 -23.44118 -23.36210 -22.09313 -21.69782 -20.60387 -19.61072 -17.72002 -17.31983 -17.08297 -16.78632 -16.46212 -16.26750 -16.07729 -15.74989 -15.59076 -15.40602 -15.14363 -15.03475 -14.84958 -14.24303 -14.07016 -13.89625 -13.73835 -13.61750 -13.46463 -13.22484 -13.14566 -13.04340 -12.81122 -12.61007 -12.50885 -12.23082 -12.10726 -12.04226 -11.84131 -11.79376 -11.74009 -11.36571 -11.33642 -11.15862 -10.55735 -9.78528 -9.55688 -9.43141 -9.26790 -8.98569 -8.51895 -6.22907 0.46859 0.53171 1.12661 1.32064 1.48053 1.74348 2.24941 2.67703 2.76264 2.86139 2.89720 3.00788 3.72705 3.85154 3.90015 4.03563 4.04585 4.07699 4.18276 4.20185 4.26418 4.31728 4.33103 4.38452 4.44858 4.47689 4.50789 4.61855 4.64799 4.67783 4.68895 4.76663 4.78922 4.81001 4.92756 4.96782 5.00286 5.02339 5.08427 5.15644 5.20567 5.25268 5.29298 5.60922 5.66260 5.69821 5.75363 5.93565 5.96224 6.10218 6.13506 6.15118 6.17793 6.92204 8.61290 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.002406 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.058217 B =11633.432587 C =13204.570599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.061 3.939 4 C 0.052 3.948 5 N -0.537 5.537 6 C 0.065 3.935 7 C -0.083 4.083 8 C -0.069 4.069 9 S -0.218 6.218 10 C -0.522 4.522 11 H 0.050 0.950 12 C 0.036 3.964 13 N -0.923 5.923 14 Si 0.926 3.074 15 H -0.261 1.261 16 H -0.263 1.263 17 H -0.228 1.228 18 C 0.101 3.899 19 H 0.036 0.964 20 C -0.074 4.074 21 C -0.085 4.085 22 C -0.132 4.132 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.124 4.124 26 C -0.123 4.123 27 C 0.072 3.928 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.277 0.723 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.130 0.870 49 H 0.039 0.961 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.570 -16.237 0.022 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.068 4.068 4 C -0.076 4.076 5 N -0.262 5.262 6 C -0.065 4.065 7 C -0.122 4.122 8 C -0.218 4.218 9 S 0.010 5.990 10 C -0.669 4.669 11 H 0.068 0.932 12 C -0.168 4.168 13 N -0.561 5.561 14 Si 0.747 3.253 15 H -0.186 1.186 16 H -0.188 1.188 17 H -0.152 1.152 18 C -0.007 4.007 19 H 0.054 0.946 20 C -0.112 4.112 21 C -0.086 4.086 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.150 4.150 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.056 4.056 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.137 0.863 45 H 0.151 0.849 46 H 0.157 0.843 47 H 0.158 0.842 48 H 0.148 0.852 49 H 0.057 0.943 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.962 -15.180 -0.085 31.817 hybrid contribution 1.544 -0.559 0.218 1.656 sum -26.419 -15.739 0.133 30.752 Atomic orbital electron populations 1.22369 0.85894 1.02755 1.01062 1.62158 1.09077 1.14089 1.43134 1.22162 0.93843 0.89306 1.01440 1.22250 0.94909 0.99051 0.91367 1.62157 1.07193 1.13659 1.43160 1.22084 0.86990 0.96391 1.00989 1.21220 0.90542 0.97139 1.03295 1.23063 0.99253 0.96179 1.03271 1.83827 1.05036 1.13671 1.96492 1.22346 0.90332 0.96771 1.57478 0.93220 1.25802 0.94379 1.03744 0.92904 1.70039 1.02713 1.34243 1.49133 0.85701 0.80807 0.78594 0.80165 1.18586 1.18786 1.15157 1.21526 0.94575 0.87771 0.96844 0.94576 1.20664 1.00941 0.91007 0.98548 1.19860 0.96047 0.95079 0.97567 1.21220 1.00364 0.93826 0.99569 1.21393 0.97288 0.96163 0.99692 1.21448 0.95766 1.00563 0.97194 1.21435 1.00462 0.93113 0.99180 1.21250 0.96289 0.96960 0.99552 1.22135 0.93280 0.98536 0.91633 0.90861 0.90497 0.95310 0.94249 0.89084 0.89530 0.94796 0.94956 0.89593 0.90787 0.91176 0.91938 0.91540 0.91416 0.89963 0.90594 0.86314 0.84858 0.84311 0.84178 0.85173 0.94297 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.60 127.69 1.23 1.60 16 2 N -0.56 -10.37 4.97 -921.93 -4.58 -14.94 16 3 C 0.06 1.12 5.62 86.31 0.49 1.61 16 4 C 0.05 1.12 5.36 86.31 0.46 1.58 16 5 N -0.54 -12.02 4.55 -870.49 -3.96 -15.99 16 6 C 0.06 1.59 4.68 86.30 0.40 2.00 16 7 C -0.08 -2.44 5.06 30.60 0.15 -2.29 16 8 C -0.07 -2.62 5.67 71.98 0.41 -2.21 16 9 S -0.22 -10.55 19.41 -56.49 -1.10 -11.65 16 10 C -0.52 -31.04 10.04 67.96 0.68 -30.36 16 11 H 0.05 3.22 8.03 -2.91 -0.02 3.19 16 12 C 0.04 2.15 5.50 84.86 0.47 2.62 16 13 N -0.92 -57.32 13.97 21.65 0.30 -57.02 16 14 Si 0.93 44.41 27.74 68.60 1.90 46.31 16 15 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.23 -10.52 6.74 99.48 0.67 -9.85 16 18 C 0.10 2.05 2.04 44.92 0.09 2.14 16 19 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 20 C -0.07 -1.37 4.63 29.85 0.14 -1.23 16 21 C -0.08 -1.51 4.47 -19.86 -0.09 -1.60 16 22 C -0.13 -2.38 9.73 22.27 0.22 -2.17 16 23 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 24 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 25 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 26 C -0.12 -1.89 8.46 22.27 0.19 -1.70 16 27 C 0.07 1.33 4.47 86.31 0.39 1.71 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.92 8.13 -2.39 -0.02 0.91 16 30 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.44 8.13 -2.39 -0.02 1.43 16 33 H 0.09 1.88 6.21 -2.39 -0.01 1.87 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 2.04 5.84 -2.38 -0.01 2.02 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.03 6.39 -2.39 -0.02 2.02 16 39 H 0.06 2.42 8.14 -2.40 -0.02 2.40 16 40 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 41 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 42 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 43 H 0.08 1.49 6.04 -2.38 -0.01 1.48 16 44 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 47 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 48 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.08 1.47 6.64 -2.39 -0.02 1.45 16 Total: -1.00 -67.32 400.54 -0.70 -68.01 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.85 Total: 18.42 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 5.89 Total: -33.16 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -8.24 Total: -87.95 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.31 kcal Atomic # 16 Polarization: -10.55 SS G_CDS: -1.10 Total: -11.65 kcal Total: -67.32 -0.70 -68.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593088898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.194 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds