Wall clock time and date at job start Tue Mar 31 2020 18:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99736 * 2 1 4 4 C 1.50702 * 109.47456 * 270.00196 * 3 2 1 5 5 C 1.38226 * 120.01067 * 259.73158 * 4 3 2 6 6 C 1.38224 * 120.01969 * 179.72447 * 5 4 3 7 7 C 1.38261 * 120.05416 * 0.54357 * 6 5 4 8 8 C 1.38177 * 120.02464 * 359.73111 * 7 6 5 9 9 C 1.38429 * 120.01290 * 80.00341 * 4 3 2 10 10 F 1.35103 * 120.02707 * 0.02562 * 9 4 3 11 11 C 1.34773 * 119.99782 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99839 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00455 * 0.02562 * 11 2 1 14 14 N 1.46901 * 109.47065 * 180.02562 * 13 11 2 15 15 C 1.46852 * 110.99818 * 293.94787 * 14 13 11 16 16 C 1.53039 * 109.52136 * 174.16288 * 15 14 13 17 17 C 1.53118 * 109.27442 * 59.18142 * 16 15 14 18 18 C 1.53119 * 109.16298 * 302.34132 * 17 16 15 19 19 H 1.08997 * 109.50335 * 297.67904 * 18 17 16 20 20 C 1.50706 * 109.50101 * 177.59820 * 18 17 16 21 21 H 1.07998 * 119.99629 * 240.00067 * 20 18 17 22 22 C 1.37875 * 119.99955 * 60.00638 * 20 18 17 23 23 N 1.31515 * 119.99932 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 119.99908 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47233 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47364 * 119.99503 * 24 22 20 27 27 H 1.48500 * 109.46997 * 239.99827 * 24 22 20 28 28 C 1.46850 * 110.99748 * 169.74408 * 14 13 11 29 29 H 1.08994 * 109.46821 * 269.99468 * 1 2 3 30 30 H 1.08997 * 109.47337 * 30.00062 * 1 2 3 31 31 H 1.09004 * 109.46818 * 149.99463 * 1 2 3 32 32 H 1.08997 * 109.47080 * 30.00254 * 3 2 1 33 33 H 1.09001 * 109.46719 * 150.00346 * 3 2 1 34 34 H 1.07994 * 119.98883 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.96792 * 180.27789 * 6 5 4 36 36 H 1.07996 * 119.98915 * 179.75024 * 7 6 5 37 37 H 1.08005 * 120.01044 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47321 * 59.99832 * 13 11 2 39 39 H 1.09005 * 109.46695 * 299.99752 * 13 11 2 40 40 H 1.08996 * 109.46186 * 54.14731 * 15 14 13 41 41 H 1.08998 * 109.45136 * 294.17663 * 15 14 13 42 42 H 1.08993 * 109.50259 * 299.23850 * 16 15 14 43 43 H 1.08997 * 109.53067 * 179.14001 * 16 15 14 44 44 H 1.09005 * 109.51966 * 182.43911 * 17 16 15 45 45 H 1.08996 * 109.57664 * 62.28741 * 17 16 15 46 46 H 0.97003 * 119.99476 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.46157 * 65.81977 * 28 14 13 48 48 H 1.08999 * 109.45819 * 305.85021 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 3.6844 1.4889 -2.0015 6 6 3.9132 1.8828 -3.3065 7 6 2.9101 2.5023 -4.0288 8 6 1.6758 2.7233 -3.4485 9 6 1.4436 2.3241 -2.1429 10 9 0.2372 2.5402 -1.5744 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 7 2.3401 -3.5888 -0.0014 15 6 3.1060 -3.6266 -1.2538 16 6 4.1861 -4.7067 -1.1604 17 6 3.5237 -6.0632 -0.9043 18 6 2.6933 -5.9826 0.3797 19 1 3.3487 -5.7693 1.2241 20 6 1.9905 -7.2962 0.6075 21 1 0.9121 -7.3307 0.6529 22 6 2.7244 -8.4536 0.7582 23 7 4.0377 -8.4115 0.7025 24 14 1.8532 -10.0816 1.0413 25 1 0.3850 -9.8602 1.0628 26 1 2.1961 -11.0237 -0.0543 27 1 2.2860 -10.6551 2.3409 28 6 1.6565 -4.8656 0.2415 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.4701 1.0094 -1.4367 35 1 4.8777 1.7103 -3.7609 36 1 3.0913 2.8132 -5.0470 37 1 0.8922 3.2069 -4.0130 38 1 0.7591 -2.5295 -0.8919 39 1 0.7584 -2.5306 0.8881 40 1 3.5752 -2.6573 -1.4219 41 1 2.4356 -3.8541 -2.0826 42 1 4.8649 -4.4725 -0.3403 43 1 4.7448 -4.7452 -2.0955 44 1 4.2919 -6.8286 -0.7939 45 1 2.8748 -6.3168 -1.7425 46 1 4.5539 -9.2259 0.8081 47 1 0.9930 -5.0872 -0.5944 48 1 1.0730 -4.7961 1.1596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:18 Heat of formation + Delta-G solvation = -46.442348 kcal Electronic energy + Delta-G solvation = -29254.644575 eV Core-core repulsion = 25223.975650 eV Total energy + Delta-G solvation = -4030.668925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.26595 -40.17824 -39.09232 -37.70198 -35.62568 -33.67273 -32.41989 -31.56355 -30.77993 -29.79103 -27.99264 -27.11606 -25.35354 -24.87657 -23.03875 -22.39664 -21.68088 -21.30851 -19.11707 -18.57620 -17.92005 -17.05448 -16.61952 -16.49759 -16.32869 -16.22225 -15.54902 -15.39648 -14.77784 -14.47112 -14.35862 -14.03907 -13.85598 -13.64916 -13.41183 -13.10574 -12.96570 -12.75590 -12.63162 -12.50789 -12.33301 -12.20498 -12.04642 -11.76287 -11.58238 -11.35588 -11.24719 -10.94164 -10.63773 -10.61199 -10.06715 -9.78709 -9.74169 -9.39914 -9.26513 -9.02290 -8.92628 -8.73282 -8.63180 -8.25347 -7.61818 -5.93358 -3.99824 0.80134 0.91950 2.75736 2.87106 3.32041 3.39779 3.40496 3.43358 3.92583 4.35794 4.38768 4.42707 4.55915 4.64624 4.74819 4.93086 4.97569 5.00981 5.19842 5.25571 5.36546 5.39498 5.46966 5.53573 5.56228 5.60372 5.78255 5.82492 5.87993 5.94254 6.06363 6.14780 6.19047 6.32377 6.38665 6.43330 6.58180 6.59160 6.81551 6.87340 7.00828 7.24331 7.31049 7.46794 7.71780 7.78694 7.84154 8.13817 8.23064 8.32237 8.52079 9.04511 9.64192 11.12517 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.002509 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.367950 B =11158.010360 C =11766.887103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.620 5.620 3 C 0.157 3.843 4 C -0.138 4.138 5 C -0.066 4.066 6 C -0.131 4.131 7 C -0.090 4.090 8 C -0.159 4.159 9 C 0.106 3.894 10 F -0.138 7.138 11 C 0.517 3.483 12 O -0.511 6.511 13 C 0.039 3.961 14 N -0.521 5.521 15 C 0.061 3.939 16 C -0.114 4.114 17 C -0.111 4.111 18 C 0.056 3.944 19 H 0.035 0.965 20 C -0.514 4.514 21 H 0.054 0.946 22 C 0.062 3.938 23 N -0.887 5.887 24 Si 0.890 3.110 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.069 3.931 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.014 0.986 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.028 0.972 46 H 0.259 0.741 47 H 0.019 0.981 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 24.388 -7.175 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.356 5.356 3 C 0.035 3.965 4 C -0.140 4.140 5 C -0.085 4.085 6 C -0.149 4.149 7 C -0.109 4.109 8 C -0.178 4.178 9 C 0.087 3.913 10 F -0.116 7.116 11 C 0.305 3.695 12 O -0.385 6.385 13 C -0.092 4.092 14 N -0.246 5.246 15 C -0.067 4.067 16 C -0.152 4.152 17 C -0.149 4.149 18 C 0.037 3.963 19 H 0.053 0.947 20 C -0.553 4.553 21 H 0.072 0.928 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.718 3.282 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.058 4.058 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.265 24.316 -6.728 25.588 hybrid contribution -1.473 -0.962 -0.555 1.844 sum -5.738 23.355 -7.283 25.128 Atomic orbital electron populations 1.21999 0.79412 1.03900 1.02182 1.47951 1.06939 1.05282 1.75385 1.20194 0.99181 0.85566 0.91587 1.20363 0.93964 1.01307 0.98347 1.21157 0.96087 0.96234 0.94988 1.21287 0.99874 0.99179 0.94572 1.21048 0.92264 0.97566 0.99999 1.21115 0.99134 1.03720 0.93837 1.17559 0.80856 1.00671 0.92256 1.91419 1.42600 1.92734 1.84881 1.20876 0.88348 0.84928 0.75306 1.90651 1.13726 1.86745 1.47339 1.21970 0.94839 0.90151 1.02279 1.61741 1.24436 1.02710 1.35674 1.22160 0.95747 1.00251 0.88516 1.21621 0.97114 0.96399 1.00017 1.21660 1.00457 0.94793 0.97978 1.18658 0.92462 0.90572 0.94631 0.94650 1.21176 0.92895 0.92124 1.49071 0.92814 1.24939 0.94806 0.98875 0.95269 1.69914 1.04711 1.27742 1.50210 0.86578 0.79817 0.84088 0.77725 1.19892 1.21131 1.21065 1.22362 0.97060 0.87883 0.98483 0.92327 0.90328 0.90948 0.89600 0.88330 0.84350 0.85179 0.85090 0.84868 0.92856 0.88312 0.90713 0.96741 0.91957 0.93726 0.89139 0.95295 0.93129 0.96247 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.24 59.85 0.61 1.21 16 2 N -0.62 -7.24 2.86 -182.96 -0.52 -7.76 16 3 C 0.16 1.64 5.27 -5.19 -0.03 1.61 16 4 C -0.14 -1.44 5.47 -104.55 -0.57 -2.01 16 5 C -0.07 -0.68 9.67 -39.59 -0.38 -1.06 16 6 C -0.13 -1.13 10.04 -39.58 -0.40 -1.53 16 7 C -0.09 -0.70 10.04 -39.60 -0.40 -1.10 16 8 C -0.16 -1.34 10.03 -39.51 -0.40 -1.74 16 9 C 0.11 1.05 7.25 -39.42 -0.29 0.76 16 10 F -0.14 -1.34 14.19 2.25 0.03 -1.31 16 11 C 0.52 7.81 7.35 -10.99 -0.08 7.73 16 12 O -0.51 -9.29 13.92 5.55 0.08 -9.22 16 13 C 0.04 0.60 4.00 -4.98 -0.02 0.58 16 14 N -0.52 -10.22 4.39 -236.11 -1.04 -11.26 16 15 C 0.06 1.19 5.11 -3.83 -0.02 1.17 16 16 C -0.11 -2.42 6.09 -26.65 -0.16 -2.58 16 17 C -0.11 -2.72 5.02 -26.61 -0.13 -2.86 16 18 C 0.06 1.42 2.27 -91.69 -0.21 1.22 16 19 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 20 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 21 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -25.69 11.35 55.43 0.63 -25.06 16 24 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 28 C 0.07 1.48 4.68 -3.83 -0.02 1.46 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.65 5.44 -51.93 -0.28 0.37 16 31 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 32 H 0.09 0.73 7.88 -51.93 -0.41 0.32 16 33 H 0.10 1.10 7.28 -51.93 -0.38 0.73 16 34 H 0.14 1.48 8.03 -52.49 -0.42 1.06 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.05 0.75 7.38 -51.93 -0.38 0.37 16 39 H 0.10 1.35 7.95 -51.93 -0.41 0.94 16 40 H 0.07 1.45 5.80 -51.93 -0.30 1.15 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 1.23 8.01 -51.93 -0.42 0.82 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -31.65 381.55 -10.40 -42.05 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.43 Total: 0.43 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.88 Total: -9.99 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.93 Total: -44.08 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.03 Total: -1.31 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.65 -10.40 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.396 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds