Wall clock time and date at job start Tue Mar 31 2020 18:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99736 * 2 1 4 4 C 1.50702 * 109.47456 * 270.00196 * 3 2 1 5 5 C 1.38226 * 120.01067 * 259.73158 * 4 3 2 6 6 C 1.38224 * 120.01969 * 179.72447 * 5 4 3 7 7 C 1.38261 * 120.05416 * 0.54357 * 6 5 4 8 8 C 1.38177 * 120.02464 * 359.73111 * 7 6 5 9 9 C 1.38429 * 120.01290 * 80.00341 * 4 3 2 10 10 F 1.35103 * 120.02707 * 0.02562 * 9 4 3 11 11 C 1.34773 * 119.99782 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99839 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00455 * 0.02562 * 11 2 1 14 14 N 1.46901 * 109.47065 * 180.02562 * 13 11 2 15 15 C 1.46852 * 110.99818 * 293.94787 * 14 13 11 16 16 C 1.53039 * 109.52136 * 174.16288 * 15 14 13 17 17 C 1.53118 * 109.27442 * 59.18142 * 16 15 14 18 18 C 1.53119 * 109.16298 * 302.34132 * 17 16 15 19 19 H 1.08997 * 109.50335 * 297.67904 * 18 17 16 20 20 C 1.50706 * 109.50101 * 177.59820 * 18 17 16 21 21 H 1.07998 * 119.99629 * 240.00067 * 20 18 17 22 22 C 1.37875 * 119.99955 * 60.00638 * 20 18 17 23 23 N 1.31515 * 119.99932 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 119.99908 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47233 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47364 * 119.99503 * 24 22 20 27 27 H 1.48500 * 109.46997 * 239.99827 * 24 22 20 28 28 C 1.46850 * 110.99748 * 169.74408 * 14 13 11 29 29 H 1.08994 * 109.46821 * 269.99468 * 1 2 3 30 30 H 1.08997 * 109.47337 * 30.00062 * 1 2 3 31 31 H 1.09004 * 109.46818 * 149.99463 * 1 2 3 32 32 H 1.08997 * 109.47080 * 30.00254 * 3 2 1 33 33 H 1.09001 * 109.46719 * 150.00346 * 3 2 1 34 34 H 1.07994 * 119.98883 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.96792 * 180.27789 * 6 5 4 36 36 H 1.07996 * 119.98915 * 179.75024 * 7 6 5 37 37 H 1.08005 * 120.01044 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47321 * 59.99832 * 13 11 2 39 39 H 1.09005 * 109.46695 * 299.99752 * 13 11 2 40 40 H 1.08996 * 109.46186 * 54.14731 * 15 14 13 41 41 H 1.08998 * 109.45136 * 294.17663 * 15 14 13 42 42 H 1.08993 * 109.50259 * 299.23850 * 16 15 14 43 43 H 1.08997 * 109.53067 * 179.14001 * 16 15 14 44 44 H 1.09005 * 109.51966 * 182.43911 * 17 16 15 45 45 H 1.08996 * 109.57664 * 62.28741 * 17 16 15 46 46 H 0.97003 * 119.99476 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.46157 * 65.81977 * 28 14 13 48 48 H 1.08999 * 109.45819 * 305.85021 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 3.6844 1.4889 -2.0015 6 6 3.9132 1.8828 -3.3065 7 6 2.9101 2.5023 -4.0288 8 6 1.6758 2.7233 -3.4485 9 6 1.4436 2.3241 -2.1429 10 9 0.2372 2.5402 -1.5744 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 7 2.3401 -3.5888 -0.0014 15 6 3.1060 -3.6266 -1.2538 16 6 4.1861 -4.7067 -1.1604 17 6 3.5237 -6.0632 -0.9043 18 6 2.6933 -5.9826 0.3797 19 1 3.3487 -5.7693 1.2241 20 6 1.9905 -7.2962 0.6075 21 1 0.9121 -7.3307 0.6529 22 6 2.7244 -8.4536 0.7582 23 7 4.0377 -8.4115 0.7025 24 14 1.8532 -10.0816 1.0413 25 1 0.3850 -9.8602 1.0628 26 1 2.1961 -11.0237 -0.0543 27 1 2.2860 -10.6551 2.3409 28 6 1.6565 -4.8656 0.2415 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.4701 1.0094 -1.4367 35 1 4.8777 1.7103 -3.7609 36 1 3.0913 2.8132 -5.0470 37 1 0.8922 3.2069 -4.0130 38 1 0.7591 -2.5295 -0.8919 39 1 0.7584 -2.5306 0.8881 40 1 3.5752 -2.6573 -1.4219 41 1 2.4356 -3.8541 -2.0826 42 1 4.8649 -4.4725 -0.3403 43 1 4.7448 -4.7452 -2.0955 44 1 4.2919 -6.8286 -0.7939 45 1 2.8748 -6.3168 -1.7425 46 1 4.5539 -9.2259 0.8081 47 1 0.9930 -5.0872 -0.5944 48 1 1.0730 -4.7961 1.1596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:17 Heat of formation + Delta-G solvation = -64.140596 kcal Electronic energy + Delta-G solvation = -29255.412029 eV Core-core repulsion = 25223.975650 eV Total energy + Delta-G solvation = -4031.436379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.97733 -41.26586 -39.97002 -39.19428 -36.66610 -35.50753 -33.70821 -32.88001 -31.67176 -31.45844 -29.09178 -28.04958 -26.91179 -26.36932 -23.83481 -23.69785 -23.25013 -22.53900 -20.39554 -20.17560 -18.65745 -18.42269 -18.03800 -17.41231 -17.27486 -17.18056 -16.73623 -16.42982 -16.29379 -15.98114 -15.45748 -15.16637 -15.08974 -14.85293 -14.44594 -14.32496 -14.22643 -14.16689 -13.88147 -13.75829 -13.49038 -13.29734 -13.21080 -12.87416 -12.83310 -12.77258 -12.51748 -12.47224 -12.41642 -12.01862 -11.79489 -11.73874 -11.46104 -11.09738 -10.68155 -10.63413 -10.34290 -9.97894 -9.79241 -9.59899 -9.12883 -8.05957 -6.20726 0.11046 0.23405 1.42091 1.43393 1.54960 1.62816 1.94268 2.44482 2.67760 3.10422 3.21086 3.23485 3.56717 3.65656 3.79684 4.02689 4.11885 4.21530 4.23553 4.24505 4.31451 4.36142 4.37431 4.49340 4.50953 4.55835 4.61834 4.73324 4.74839 4.87289 4.89405 4.92005 4.95801 5.09577 5.11703 5.17090 5.18234 5.37930 5.38552 5.46499 5.48001 5.51264 5.65073 5.92777 5.95052 6.10442 6.15293 6.21086 6.40683 6.45980 6.92578 7.21333 7.47378 8.99166 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.002509 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.367950 B =11158.010360 C =11766.887103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.612 5.612 3 C 0.157 3.843 4 C -0.150 4.150 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.086 4.086 8 C -0.160 4.160 9 C 0.095 3.905 10 F -0.139 7.139 11 C 0.515 3.485 12 O -0.552 6.552 13 C 0.039 3.961 14 N -0.540 5.540 15 C 0.071 3.929 16 C -0.107 4.107 17 C -0.102 4.102 18 C 0.052 3.948 19 H -0.008 1.008 20 C -0.532 4.532 21 H 0.057 0.943 22 C 0.011 3.989 23 N -0.918 5.918 24 Si 0.957 3.043 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.084 3.916 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.026 0.974 46 H 0.259 0.741 47 H 0.025 0.975 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.561 25.715 -8.505 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.346 5.346 3 C 0.034 3.966 4 C -0.152 4.152 5 C -0.103 4.103 6 C -0.153 4.153 7 C -0.104 4.104 8 C -0.179 4.179 9 C 0.076 3.924 10 F -0.117 7.117 11 C 0.304 3.696 12 O -0.429 6.429 13 C -0.091 4.091 14 N -0.264 5.264 15 C -0.056 4.056 16 C -0.145 4.145 17 C -0.140 4.140 18 C 0.033 3.967 19 H 0.010 0.990 20 C -0.570 4.570 21 H 0.075 0.925 22 C -0.188 4.188 23 N -0.558 5.558 24 Si 0.783 3.217 25 H -0.188 1.188 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.044 4.044 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.517 25.685 -8.058 27.697 hybrid contribution -0.775 -1.284 -0.149 1.507 sum -7.291 24.402 -8.207 26.757 Atomic orbital electron populations 1.22214 0.77396 1.04693 1.03587 1.47960 1.08172 1.04698 1.73722 1.20264 0.98814 0.85349 0.92150 1.20333 0.94388 1.02210 0.98277 1.21176 0.95993 0.97225 0.95949 1.21545 1.01033 0.98781 0.93965 1.21409 0.91524 0.96342 1.01140 1.21444 0.99994 1.03077 0.93346 1.17682 0.80709 1.01152 0.92901 1.91411 1.42520 1.92784 1.85000 1.20831 0.87855 0.85730 0.75211 1.90640 1.15306 1.87341 1.49612 1.22048 0.94267 0.88655 1.04151 1.61583 1.25837 1.03031 1.35998 1.22020 0.95267 0.99449 0.88901 1.21527 0.97482 0.95281 1.00209 1.21463 0.99448 0.95700 0.97409 1.18585 0.92933 0.91790 0.93363 0.98954 1.21542 0.93201 0.93262 1.49039 0.92476 1.25776 0.95465 1.02517 0.95031 1.70071 1.06167 1.28613 1.50903 0.85521 0.79103 0.79582 0.77514 1.18777 1.20740 1.20839 1.22032 0.95635 0.87649 0.99036 0.90590 0.89503 0.90219 0.87657 0.89821 0.85830 0.83620 0.82132 0.82747 0.90717 0.86444 0.90240 0.95774 0.93990 0.91682 0.92422 0.95480 0.93148 0.95717 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 10.24 127.77 1.31 2.26 16 2 N -0.61 -13.40 2.86 -851.13 -2.43 -15.83 16 3 C 0.16 3.17 5.27 85.63 0.45 3.62 16 4 C -0.15 -3.02 5.47 -19.82 -0.11 -3.13 16 5 C -0.08 -1.73 9.67 22.26 0.22 -1.52 16 6 C -0.14 -2.15 10.04 22.27 0.22 -1.92 16 7 C -0.09 -1.11 10.04 22.26 0.22 -0.88 16 8 C -0.16 -2.29 10.03 22.31 0.22 -2.06 16 9 C 0.10 1.71 7.25 22.37 0.16 1.87 16 10 F -0.14 -2.40 14.19 44.97 0.64 -1.76 16 11 C 0.52 15.08 7.35 87.66 0.64 15.73 16 12 O -0.55 -20.28 13.92 -3.05 -0.04 -20.32 16 13 C 0.04 1.14 4.00 85.56 0.34 1.48 16 14 N -0.54 -20.85 4.39 -900.92 -3.96 -24.81 16 15 C 0.07 2.74 5.11 86.33 0.44 3.18 16 16 C -0.11 -4.63 6.09 30.65 0.19 -4.44 16 17 C -0.10 -5.14 5.02 30.67 0.15 -4.99 16 18 C 0.05 2.74 2.27 -11.49 -0.03 2.72 16 19 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 20 C -0.53 -29.75 8.56 25.60 0.22 -29.53 16 21 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 22 C 0.01 0.60 5.30 84.65 0.45 1.04 16 23 N -0.92 -54.70 11.35 21.45 0.24 -54.45 16 24 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 C 0.08 3.56 4.68 86.32 0.40 3.96 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.20 5.44 -2.39 -0.01 1.19 16 31 H 0.08 1.10 6.44 -2.39 -0.02 1.09 16 32 H 0.11 1.67 7.88 -2.39 -0.02 1.65 16 33 H 0.08 1.94 7.28 -2.39 -0.02 1.92 16 34 H 0.12 2.82 8.03 -2.91 -0.02 2.80 16 35 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.08 1.87 7.38 -2.39 -0.02 1.85 16 39 H 0.12 2.93 7.95 -2.38 -0.02 2.91 16 40 H 0.08 3.04 5.80 -2.39 -0.01 3.03 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.06 3.27 6.15 -2.38 -0.01 3.26 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 47 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 2.69 8.01 -2.39 -0.02 2.67 16 Total: -1.00 -70.11 381.55 2.94 -67.17 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.95 Total: 16.50 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 5.51 Total: -12.63 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -6.15 Total: -95.10 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.04 Total: -20.32 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.64 Total: -1.76 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.11 2.94 -67.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.032 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds