Wall clock time and date at job start Tue Mar 31 2020 17:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46977 * 2 1 4 4 C 1.50697 * 109.47100 * 239.99819 * 2 1 3 5 5 O 1.21273 * 120.00083 * 269.13360 * 4 2 1 6 6 N 1.34781 * 119.99792 * 89.13492 * 4 2 1 7 7 C 1.46499 * 119.99618 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.46933 * 180.02562 * 7 6 4 9 9 C 1.38246 * 119.97167 * 269.72789 * 8 7 6 10 10 C 1.38198 * 120.02662 * 179.72798 * 9 8 7 11 11 C 1.38462 * 119.97409 * 0.51912 * 10 9 8 12 12 F 1.35094 * 120.03015 * 179.73043 * 11 10 9 13 13 C 1.38459 * 119.94598 * 359.75531 * 11 10 9 14 14 C 1.38198 * 119.97760 * 359.97438 * 13 11 10 15 15 N 1.46899 * 109.47298 * 119.99634 * 2 1 3 16 16 C 1.46843 * 111.00019 * 47.89335 * 15 2 1 17 17 C 1.53040 * 109.52791 * 185.83892 * 16 15 2 18 18 C 1.53123 * 109.27524 * 300.82042 * 17 16 15 19 19 C 1.53119 * 109.16155 * 57.65337 * 18 17 16 20 20 H 1.08999 * 109.53757 * 62.30318 * 19 18 17 21 21 C 1.50692 * 109.50331 * 182.40482 * 19 18 17 22 22 H 1.07996 * 120.00173 * 120.07932 * 21 19 18 23 23 C 1.37876 * 120.00070 * 299.79868 * 21 19 18 24 24 N 1.31514 * 120.00555 * 180.02562 * 23 21 19 25 25 Si 1.86804 * 119.99947 * 0.02562 * 23 21 19 26 26 H 1.48502 * 109.47013 * 89.99744 * 25 23 21 27 27 H 1.48498 * 109.47258 * 209.99542 * 25 23 21 28 28 H 1.48497 * 109.46867 * 329.99839 * 25 23 21 29 29 C 1.46851 * 110.99922 * 172.10333 * 15 2 1 30 30 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47211 * 299.99971 * 1 2 3 32 32 H 1.08994 * 109.47550 * 59.99989 * 1 2 3 33 33 H 0.97003 * 120.00116 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.47159 * 299.99588 * 7 6 4 35 35 H 1.08999 * 109.47497 * 60.00016 * 7 6 4 36 36 H 1.07999 * 119.98708 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.01671 * 180.29697 * 10 9 8 38 38 H 1.08001 * 120.01173 * 180.02562 * 13 11 10 39 39 H 1.08000 * 119.99308 * 180.02562 * 14 13 11 40 40 H 1.09006 * 109.46276 * 305.85766 * 16 15 2 41 41 H 1.08998 * 109.46517 * 65.82292 * 16 15 2 42 42 H 1.08997 * 109.49886 * 60.75618 * 17 16 15 43 43 H 1.08993 * 109.50324 * 180.87541 * 17 16 15 44 44 H 1.08994 * 109.52110 * 297.74492 * 18 17 16 45 45 H 1.08998 * 109.51701 * 177.55271 * 18 17 16 46 46 H 0.96997 * 120.00469 * 180.02562 * 24 23 21 47 47 H 1.08995 * 109.46662 * 54.14794 * 29 15 2 48 48 H 1.09004 * 109.44983 * 294.17056 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2494 -1.9031 -1.1958 6 7 2.2403 -0.0203 -2.3693 7 6 2.7281 -0.7111 -3.5656 8 6 2.8760 0.2790 -4.6921 9 6 1.8165 0.5142 -5.5484 10 6 1.9490 1.4260 -6.5784 11 6 3.1471 2.0962 -6.7591 12 9 3.2797 2.9837 -7.7689 13 6 4.2094 1.8556 -5.9042 14 6 4.0727 0.9474 -4.8715 15 7 2.0196 -0.6924 1.1995 16 6 1.3285 -1.9745 1.3860 17 6 1.7567 -2.5976 2.7166 18 6 3.2731 -2.8101 2.7105 19 6 3.9677 -1.4676 2.4663 20 1 3.7325 -0.7821 3.2804 21 6 5.4585 -1.6773 2.3999 22 1 6.0019 -1.4116 1.5052 23 6 6.1297 -2.2029 3.4835 24 7 7.4308 -2.3855 3.4258 25 14 5.1909 -2.6558 5.0337 26 1 4.7387 -4.0675 4.9439 27 1 6.0772 -2.4942 6.2142 28 1 4.0106 -1.7660 5.1753 29 6 3.4754 -0.8772 1.1429 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.0670 0.9337 -2.3968 34 1 3.6954 -1.1664 -3.3532 35 1 2.0172 -1.4857 -3.8532 36 1 0.8835 -0.0119 -5.4100 37 1 1.1197 1.6132 -7.2443 38 1 5.1443 2.3780 -6.0440 39 1 4.9010 0.7599 -4.2044 40 1 0.2511 -1.8087 1.3927 41 1 1.5869 -2.6487 0.5695 42 1 1.4861 -1.9301 3.5347 43 1 1.2553 -3.5565 2.8475 44 1 3.5398 -3.5080 1.9169 45 1 3.5881 -3.2135 3.6728 46 1 7.9030 -2.7556 4.1880 47 1 3.9574 0.0854 0.9731 48 1 3.7236 -1.5567 0.3275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:33 Heat of formation + Delta-G solvation = -49.013243 kcal Electronic energy + Delta-G solvation = -28913.346474 eV Core-core repulsion = 24882.566067 eV Total energy + Delta-G solvation = -4030.780407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.27936 -40.48701 -39.52176 -37.67971 -34.97328 -34.36726 -32.32061 -31.57793 -31.33797 -30.39633 -29.51557 -26.54888 -24.95073 -24.18925 -23.48841 -22.62944 -21.72666 -21.07599 -19.97752 -18.94122 -18.08563 -17.20274 -16.81936 -16.74074 -16.33229 -15.96051 -15.73533 -15.24211 -15.08833 -14.48105 -14.38344 -14.15924 -14.01470 -13.93132 -13.79561 -13.55672 -12.94779 -12.83060 -12.66388 -12.51667 -12.34093 -12.12911 -12.07051 -11.93782 -11.83461 -11.42694 -11.25638 -10.96541 -10.77695 -10.32097 -10.18495 -9.94640 -9.86007 -9.59487 -9.55096 -9.13766 -9.07962 -9.01561 -8.85359 -8.44992 -7.65780 -6.01070 -3.99442 0.61238 0.79583 2.70113 2.93446 3.34201 3.43957 3.44681 3.48149 3.83680 4.25480 4.27699 4.29191 4.47926 4.48356 4.80579 4.81764 4.85282 5.03102 5.17466 5.27787 5.31019 5.41773 5.46713 5.50748 5.62270 5.63572 5.68609 5.74796 5.77643 5.82135 5.94128 6.03177 6.09685 6.21088 6.27967 6.31127 6.42491 6.44264 6.46674 6.70767 6.72795 6.88603 6.95421 7.25833 7.37465 7.46386 7.60521 7.72234 7.91698 8.27771 8.58934 9.02071 9.62084 11.12327 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002607 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.567350 B =10739.401634 C =11937.504788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.488 3.512 5 O -0.526 6.526 6 N -0.731 5.731 7 C 0.159 3.841 8 C -0.115 4.115 9 C -0.072 4.072 10 C -0.157 4.157 11 C 0.102 3.898 12 F -0.140 7.140 13 C -0.154 4.154 14 C -0.069 4.069 15 N -0.512 5.512 16 C 0.042 3.958 17 C -0.118 4.118 18 C -0.121 4.121 19 C 0.023 3.977 20 H 0.033 0.967 21 C -0.510 4.510 22 H 0.071 0.929 23 C 0.070 3.930 24 N -0.904 5.904 25 Si 0.888 3.112 26 H -0.280 1.280 27 H -0.300 1.300 28 H -0.263 1.263 29 C 0.065 3.935 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.399 0.601 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.263 0.737 47 H 0.060 0.940 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.053 8.781 -17.995 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.273 3.727 5 O -0.401 6.401 6 N -0.385 5.385 7 C 0.036 3.964 8 C -0.116 4.116 9 C -0.091 4.091 10 C -0.176 4.176 11 C 0.083 3.917 12 F -0.119 7.119 13 C -0.173 4.173 14 C -0.088 4.088 15 N -0.236 5.236 16 C -0.085 4.085 17 C -0.156 4.156 18 C -0.158 4.158 19 C 0.004 3.996 20 H 0.051 0.949 21 C -0.549 4.549 22 H 0.089 0.911 23 C -0.131 4.131 24 N -0.543 5.543 25 Si 0.719 3.281 26 H -0.207 1.207 27 H -0.227 1.227 28 H -0.188 1.188 29 C -0.062 4.062 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.233 0.767 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.831 8.149 -17.475 24.326 hybrid contribution -0.055 -0.159 -0.177 0.244 sum -14.887 7.990 -17.652 24.434 Atomic orbital electron populations 1.21864 0.92459 1.03076 1.02607 1.21942 0.96885 0.99255 0.86650 0.88334 1.22381 0.77228 0.88307 0.84793 1.90686 1.50582 1.15206 1.83602 1.46330 1.68860 1.12454 1.10810 1.20147 1.01161 0.92779 0.82331 1.20010 0.94315 0.99377 0.97871 1.20981 0.98671 0.96228 0.93218 1.21158 0.96999 0.98754 1.00649 1.17802 0.95359 0.91041 0.87506 1.91510 1.96417 1.66009 1.57915 1.21210 0.98930 1.00962 0.96188 1.21083 0.97510 0.93871 0.96336 1.62563 1.07343 1.22524 1.31124 1.22350 0.97215 0.90531 0.98445 1.21642 0.97954 0.99016 0.96988 1.21995 0.92785 1.00713 1.00350 1.19114 0.95310 0.92100 0.93055 0.94924 1.20986 0.90050 1.42070 1.01755 0.91125 1.24977 0.94672 0.95095 0.98404 1.69901 1.07576 1.45552 1.31246 0.86815 0.79594 0.79043 0.82636 1.20736 1.22739 1.18799 1.22268 0.83723 0.99943 1.00257 0.91558 0.90507 0.92235 0.76674 0.90285 0.90617 0.84762 0.84582 0.84408 0.84392 0.91788 0.91837 0.92233 0.92905 0.92428 0.93776 0.92770 0.92145 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.52 37.15 0.32 -1.14 16 2 C 0.07 0.86 2.98 -68.87 -0.21 0.66 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.49 6.83 5.99 -10.99 -0.07 6.76 16 5 O -0.53 -9.55 12.50 5.56 0.07 -9.48 16 6 N -0.73 -7.53 5.55 -61.47 -0.34 -7.87 16 7 C 0.16 1.56 5.80 -5.19 -0.03 1.53 16 8 C -0.12 -0.92 5.25 -104.62 -0.55 -1.47 16 9 C -0.07 -0.50 9.70 -39.59 -0.38 -0.89 16 10 C -0.16 -1.12 10.03 -39.51 -0.40 -1.52 16 11 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 12 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 13 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 14 C -0.07 -0.55 9.70 -39.59 -0.38 -0.94 16 15 N -0.51 -8.88 4.74 -228.08 -1.08 -9.96 16 16 C 0.04 0.72 4.59 -3.83 -0.02 0.70 16 17 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 18 C -0.12 -2.76 4.74 -26.61 -0.13 -2.89 16 19 C 0.02 0.57 1.85 -91.69 -0.17 0.40 16 20 H 0.03 0.83 7.20 -51.93 -0.37 0.45 16 21 C -0.51 -14.67 9.14 -34.44 -0.31 -14.99 16 22 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 23 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 24 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 25 Si 0.89 22.67 24.36 -169.99 -4.14 18.53 16 26 H -0.28 -7.01 6.89 56.52 0.39 -6.62 16 27 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 29 C 0.06 1.36 4.08 -3.83 -0.02 1.34 16 30 H 0.07 0.74 6.19 -51.93 -0.32 0.42 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.40 3.13 8.46 -40.82 -0.35 2.79 16 34 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.06 0.93 5.81 -51.93 -0.30 0.63 16 41 H 0.06 1.21 5.76 -51.93 -0.30 0.92 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.04 1.06 3.37 -51.93 -0.17 0.88 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 48 H 0.05 1.08 6.03 -51.93 -0.31 0.76 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -33.66 374.62 -9.54 -43.20 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.22 Total: 2.55 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -3.29 Total: -13.89 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.65 Total: -45.27 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.66 -9.54 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.817 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds