Wall clock time and date at job start Tue Mar 31 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46977 * 2 1 4 4 C 1.50697 * 109.47100 * 239.99819 * 2 1 3 5 5 O 1.21273 * 120.00083 * 269.13360 * 4 2 1 6 6 N 1.34781 * 119.99792 * 89.13492 * 4 2 1 7 7 C 1.46499 * 119.99618 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.46933 * 180.02562 * 7 6 4 9 9 C 1.38246 * 119.97167 * 269.72789 * 8 7 6 10 10 C 1.38198 * 120.02662 * 179.72798 * 9 8 7 11 11 C 1.38462 * 119.97409 * 0.51912 * 10 9 8 12 12 F 1.35094 * 120.03015 * 179.73043 * 11 10 9 13 13 C 1.38459 * 119.94598 * 359.75531 * 11 10 9 14 14 C 1.38198 * 119.97760 * 359.97438 * 13 11 10 15 15 N 1.46899 * 109.47298 * 119.99634 * 2 1 3 16 16 C 1.46843 * 111.00019 * 47.89335 * 15 2 1 17 17 C 1.53040 * 109.52791 * 185.83892 * 16 15 2 18 18 C 1.53123 * 109.27524 * 300.82042 * 17 16 15 19 19 C 1.53119 * 109.16155 * 57.65337 * 18 17 16 20 20 H 1.08999 * 109.53757 * 62.30318 * 19 18 17 21 21 C 1.50692 * 109.50331 * 182.40482 * 19 18 17 22 22 H 1.07996 * 120.00173 * 120.07932 * 21 19 18 23 23 C 1.37876 * 120.00070 * 299.79868 * 21 19 18 24 24 N 1.31514 * 120.00555 * 180.02562 * 23 21 19 25 25 Si 1.86804 * 119.99947 * 0.02562 * 23 21 19 26 26 H 1.48502 * 109.47013 * 89.99744 * 25 23 21 27 27 H 1.48498 * 109.47258 * 209.99542 * 25 23 21 28 28 H 1.48497 * 109.46867 * 329.99839 * 25 23 21 29 29 C 1.46851 * 110.99922 * 172.10333 * 15 2 1 30 30 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47211 * 299.99971 * 1 2 3 32 32 H 1.08994 * 109.47550 * 59.99989 * 1 2 3 33 33 H 0.97003 * 120.00116 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.47159 * 299.99588 * 7 6 4 35 35 H 1.08999 * 109.47497 * 60.00016 * 7 6 4 36 36 H 1.07999 * 119.98708 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.01671 * 180.29697 * 10 9 8 38 38 H 1.08001 * 120.01173 * 180.02562 * 13 11 10 39 39 H 1.08000 * 119.99308 * 180.02562 * 14 13 11 40 40 H 1.09006 * 109.46276 * 305.85766 * 16 15 2 41 41 H 1.08998 * 109.46517 * 65.82292 * 16 15 2 42 42 H 1.08997 * 109.49886 * 60.75618 * 17 16 15 43 43 H 1.08993 * 109.50324 * 180.87541 * 17 16 15 44 44 H 1.08994 * 109.52110 * 297.74492 * 18 17 16 45 45 H 1.08998 * 109.51701 * 177.55271 * 18 17 16 46 46 H 0.96997 * 120.00469 * 180.02562 * 24 23 21 47 47 H 1.08995 * 109.46662 * 54.14794 * 29 15 2 48 48 H 1.09004 * 109.44983 * 294.17056 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2494 -1.9031 -1.1958 6 7 2.2403 -0.0203 -2.3693 7 6 2.7281 -0.7111 -3.5656 8 6 2.8760 0.2790 -4.6921 9 6 1.8165 0.5142 -5.5484 10 6 1.9490 1.4260 -6.5784 11 6 3.1471 2.0962 -6.7591 12 9 3.2797 2.9837 -7.7689 13 6 4.2094 1.8556 -5.9042 14 6 4.0727 0.9474 -4.8715 15 7 2.0196 -0.6924 1.1995 16 6 1.3285 -1.9745 1.3860 17 6 1.7567 -2.5976 2.7166 18 6 3.2731 -2.8101 2.7105 19 6 3.9677 -1.4676 2.4663 20 1 3.7325 -0.7821 3.2804 21 6 5.4585 -1.6773 2.3999 22 1 6.0019 -1.4116 1.5052 23 6 6.1297 -2.2029 3.4835 24 7 7.4308 -2.3855 3.4258 25 14 5.1909 -2.6558 5.0337 26 1 4.7387 -4.0675 4.9439 27 1 6.0772 -2.4942 6.2142 28 1 4.0106 -1.7660 5.1753 29 6 3.4754 -0.8772 1.1429 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.0670 0.9337 -2.3968 34 1 3.6954 -1.1664 -3.3532 35 1 2.0172 -1.4857 -3.8532 36 1 0.8835 -0.0119 -5.4100 37 1 1.1197 1.6132 -7.2443 38 1 5.1443 2.3780 -6.0440 39 1 4.9010 0.7599 -4.2044 40 1 0.2511 -1.8087 1.3927 41 1 1.5869 -2.6487 0.5695 42 1 1.4861 -1.9301 3.5347 43 1 1.2553 -3.5565 2.8475 44 1 3.5398 -3.5080 1.9169 45 1 3.5881 -3.2135 3.6728 46 1 7.9030 -2.7556 4.1880 47 1 3.9574 0.0854 0.9731 48 1 3.7236 -1.5567 0.3275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:32 Heat of formation + Delta-G solvation = -72.391668 kcal Electronic energy + Delta-G solvation = -28914.360239 eV Core-core repulsion = 24882.566067 eV Total energy + Delta-G solvation = -4031.794172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.95246 -41.62725 -40.26132 -39.05555 -36.09472 -35.78733 -34.24472 -32.25047 -32.16332 -32.05488 -30.80195 -27.46801 -26.69676 -25.59239 -24.07761 -23.92487 -22.77634 -22.33928 -21.18413 -20.56894 -18.92598 -18.69999 -18.15284 -17.61455 -17.48308 -16.94935 -16.62818 -16.30732 -16.16204 -15.90403 -15.75055 -15.32627 -15.24329 -14.83531 -14.79175 -14.65208 -14.49103 -14.14024 -14.00859 -13.76811 -13.50271 -13.28231 -13.13607 -13.03302 -12.86531 -12.70104 -12.64914 -12.12647 -12.12379 -12.00888 -11.80745 -11.68966 -11.45399 -11.23454 -11.00387 -10.75829 -10.61447 -10.16005 -10.09323 -9.76372 -9.03082 -8.30943 -6.34293 -0.03046 0.21530 1.30335 1.35245 1.47477 1.61896 2.15210 2.32786 2.68502 2.97336 3.04843 3.22197 3.56162 3.69737 3.85769 3.92853 3.98992 4.04573 4.14186 4.19667 4.26479 4.27975 4.35918 4.54372 4.58247 4.61131 4.65506 4.79314 4.85189 4.90787 4.92493 4.94292 4.94980 5.06051 5.08460 5.10333 5.15850 5.17619 5.27588 5.33368 5.39347 5.46516 5.49370 5.62471 5.74579 5.83405 6.08869 6.17426 6.33339 6.54723 6.72086 7.26197 7.31044 8.86199 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002607 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.567350 B =10739.401634 C =11937.504788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.120 0.880 4 C 0.484 3.516 5 O -0.573 6.573 6 N -0.713 5.713 7 C 0.164 3.836 8 C -0.116 4.116 9 C -0.066 4.066 10 C -0.153 4.153 11 C 0.088 3.912 12 F -0.148 7.148 13 C -0.158 4.158 14 C -0.077 4.077 15 N -0.512 5.512 16 C 0.045 3.955 17 C -0.114 4.114 18 C -0.120 4.120 19 C 0.023 3.977 20 H 0.030 0.970 21 C -0.518 4.518 22 H 0.027 0.973 23 C 0.011 3.989 24 N -0.952 5.952 25 Si 0.953 3.047 26 H -0.271 1.271 27 H -0.297 1.297 28 H -0.243 1.243 29 C 0.081 3.919 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.414 0.586 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.266 0.734 47 H 0.056 0.944 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.761 9.852 -17.933 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.051 4.051 3 H 0.137 0.863 4 C 0.270 3.730 5 O -0.452 6.452 6 N -0.367 5.367 7 C 0.040 3.960 8 C -0.116 4.116 9 C -0.084 4.084 10 C -0.171 4.171 11 C 0.069 3.931 12 F -0.126 7.126 13 C -0.177 4.177 14 C -0.096 4.096 15 N -0.235 5.235 16 C -0.082 4.082 17 C -0.151 4.151 18 C -0.158 4.158 19 C 0.004 3.996 20 H 0.048 0.952 21 C -0.556 4.556 22 H 0.045 0.955 23 C -0.185 4.185 24 N -0.592 5.592 25 Si 0.780 3.220 26 H -0.197 1.197 27 H -0.225 1.225 28 H -0.166 1.166 29 C -0.046 4.046 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.251 0.749 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -18.567 9.274 -17.454 27.118 hybrid contribution 1.173 -0.437 -0.361 1.302 sum -17.395 8.837 -17.816 26.421 Atomic orbital electron populations 1.21863 0.89494 1.03180 1.04706 1.22181 0.99150 0.99247 0.84553 0.86274 1.22508 0.76834 0.87769 0.85845 1.90680 1.52816 1.17256 1.84417 1.46158 1.67304 1.13075 1.10124 1.20070 0.99986 0.93329 0.82605 1.19851 0.94881 0.99215 0.97689 1.21156 0.98957 0.95845 0.92439 1.21387 0.97049 0.98007 1.00687 1.18032 0.96104 0.91395 0.87574 1.91491 1.96510 1.66362 1.58268 1.21319 0.99427 1.00942 0.96024 1.21119 0.97675 0.94180 0.96603 1.62492 1.04592 1.22653 1.33802 1.22360 0.99113 0.89978 0.96778 1.21637 0.94456 1.00832 0.98223 1.21892 0.96173 0.98830 0.98901 1.19033 0.92503 0.93311 0.94737 0.95223 1.21306 0.92717 1.41446 1.00178 0.95468 1.25872 0.95487 0.95072 1.02101 1.70051 1.09500 1.47099 1.32571 0.85764 0.78764 0.79474 0.77996 1.19714 1.22478 1.16635 1.21863 0.86748 0.98676 0.97358 0.92353 0.89359 0.89249 0.74916 0.92570 0.90390 0.82707 0.82576 0.83553 0.84585 0.88141 0.93915 0.91251 0.90453 0.94585 0.94679 0.92562 0.92518 0.96164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.52 71.98 0.61 -1.60 16 2 C 0.06 1.45 2.98 44.17 0.13 1.58 16 3 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.48 13.08 5.99 87.66 0.52 13.61 16 5 O -0.57 -21.04 12.50 -3.01 -0.04 -21.08 16 6 N -0.71 -13.75 5.55 -466.80 -2.59 -16.34 16 7 C 0.16 3.13 5.80 85.63 0.50 3.63 16 8 C -0.12 -1.71 5.25 -19.86 -0.10 -1.82 16 9 C -0.07 -0.76 9.70 22.26 0.22 -0.54 16 10 C -0.15 -1.84 10.03 22.31 0.22 -1.61 16 11 C 0.09 1.37 7.30 22.38 0.16 1.53 16 12 F -0.15 -2.61 17.27 44.97 0.78 -1.84 16 13 C -0.16 -2.38 10.03 22.31 0.22 -2.16 16 14 C -0.08 -1.20 9.70 22.26 0.22 -0.98 16 15 N -0.51 -16.87 4.74 -875.50 -4.15 -21.02 16 16 C 0.04 1.45 4.59 86.33 0.40 1.84 16 17 C -0.11 -3.96 6.09 30.65 0.19 -3.78 16 18 C -0.12 -5.45 4.74 30.67 0.15 -5.30 16 19 C 0.02 1.15 1.85 -11.49 -0.02 1.13 16 20 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 21 C -0.52 -31.09 9.14 25.60 0.23 -30.86 16 22 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 23 C 0.01 0.69 5.45 84.65 0.46 1.15 16 24 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 25 Si 0.95 47.04 24.36 68.60 1.67 48.71 16 26 H -0.27 -12.87 6.89 99.48 0.69 -12.19 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 28 H -0.24 -11.09 6.53 99.48 0.65 -10.44 16 29 C 0.08 3.46 4.08 86.33 0.35 3.82 16 30 H 0.06 1.08 6.19 -2.39 -0.01 1.06 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 5.53 8.46 -92.71 -0.78 4.74 16 34 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 35 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 36 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.10 2.54 5.81 -2.38 -0.01 2.52 16 41 H 0.04 1.60 5.76 -2.39 -0.01 1.59 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.03 1.63 3.37 -2.39 -0.01 1.62 16 46 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 47 H 0.06 2.39 8.12 -2.39 -0.02 2.37 16 48 H 0.02 0.97 6.03 -2.38 -0.01 0.96 16 Total: -1.00 -76.87 374.62 0.54 -76.32 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.11 Total: 16.95 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.46 Total: -20.38 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -6.44 Total: -98.69 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.04 Total: -21.08 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.67 Total: 48.71 kcal Total: -76.87 0.54 -76.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.932 kcal (2) G-P(sol) polarization free energy of solvation -76.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds