Wall clock time and date at job start Tue Mar 31 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.50703 * 109.47138 * 180.28062 * 7 6 4 9 9 C 1.38246 * 119.97328 * 269.72698 * 8 7 6 10 10 C 1.38195 * 120.02726 * 179.72701 * 9 8 7 11 11 C 1.38461 * 119.97135 * 0.52366 * 10 9 8 12 12 F 1.35101 * 120.02217 * 179.73134 * 11 10 9 13 13 C 1.38454 * 119.94949 * 359.74751 * 11 10 9 14 14 C 1.38194 * 119.97573 * 0.02562 * 13 11 10 15 15 N 1.46899 * 109.46555 * 240.00529 * 2 1 3 16 16 C 1.46846 * 111.00302 * 306.04305 * 15 2 1 17 17 C 1.53040 * 109.52612 * 185.83953 * 16 15 2 18 18 C 1.53121 * 109.27852 * 300.82379 * 17 16 15 19 19 C 1.53122 * 109.15829 * 57.65537 * 18 17 16 20 20 H 1.08994 * 109.50471 * 62.32443 * 19 18 17 21 21 C 1.50701 * 109.50057 * 182.40449 * 19 18 17 22 22 H 1.08004 * 120.00432 * 119.99734 * 21 19 18 23 23 C 1.37879 * 120.00009 * 299.99594 * 21 19 18 24 24 N 1.31514 * 120.00029 * 0.02562 * 23 21 19 25 25 Si 1.86799 * 119.99911 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47279 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46994 * 120.00254 * 25 23 21 28 28 H 1.48504 * 109.46981 * 240.00126 * 25 23 21 29 29 C 1.46850 * 111.00092 * 70.25777 * 15 2 1 30 30 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 31 31 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 35 35 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 36 36 H 1.08005 * 119.98234 * 359.97438 * 9 8 7 37 37 H 1.07998 * 120.01263 * 180.29866 * 10 9 8 38 38 H 1.07999 * 120.01109 * 180.02562 * 13 11 10 39 39 H 1.08005 * 119.98869 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.46560 * 305.86063 * 16 15 2 41 41 H 1.09005 * 109.45982 * 65.82575 * 16 15 2 42 42 H 1.09004 * 109.50209 * 60.76140 * 17 16 15 43 43 H 1.08994 * 109.50651 * 180.88203 * 17 16 15 44 44 H 1.09005 * 109.52136 * 177.55753 * 18 17 16 45 45 H 1.08999 * 109.52316 * 297.74847 * 18 17 16 46 46 H 0.96996 * 119.99974 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.45898 * 294.17075 * 29 15 2 48 48 H 1.09001 * 109.46248 * 54.14334 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6834 -0.2374 4.8811 9 6 2.4319 0.7738 5.4541 10 6 1.9656 1.4268 6.5793 11 6 0.7533 1.0605 7.1390 12 9 0.2990 1.6945 8.2421 13 6 0.0072 0.0439 6.5675 14 6 0.4733 -0.6045 5.4396 15 7 2.0195 -0.6924 -1.1995 16 6 1.4344 -2.0349 -1.3080 17 6 2.0742 -2.7784 -2.4827 18 6 1.8315 -1.9897 -3.7726 19 6 2.4078 -0.5798 -3.6156 20 1 3.4853 -0.6420 -3.4630 21 6 2.1212 0.2222 -4.8588 22 1 1.5370 1.1283 -4.7942 23 6 2.6047 -0.2008 -6.0788 24 7 3.3156 -1.3044 -6.1576 25 14 2.2499 0.7937 -7.6197 26 1 1.4361 1.9839 -7.2643 27 1 3.5300 1.2343 -8.2301 28 1 1.5022 -0.0462 -8.5897 29 6 1.7583 0.0999 -2.4080 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.1490 0.5383 2.5436 34 1 1.8264 -1.9720 3.6462 35 1 3.2802 -0.9450 3.6548 36 1 3.3796 1.0563 5.0199 37 1 2.5483 2.2200 7.0239 38 1 -0.9388 -0.2424 7.0030 39 1 -0.1088 -1.3973 4.9934 40 1 1.6176 -2.5865 -0.3859 41 1 0.3603 -1.9506 -1.4732 42 1 3.1463 -2.8751 -2.3116 43 1 1.6285 -3.7690 -2.5726 44 1 2.3226 -2.4933 -4.6053 45 1 0.7604 -1.9261 -3.9646 46 1 3.6554 -1.6022 -7.0159 47 1 0.6827 0.1742 -2.5681 48 1 2.1769 1.0988 -2.2849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:41 Heat of formation + Delta-G solvation = -57.127115 kcal Electronic energy + Delta-G solvation = -28364.069405 eV Core-core repulsion = 24332.937154 eV Total energy + Delta-G solvation = -4031.132251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.33901 -40.28981 -39.47105 -37.78650 -34.96427 -34.23679 -32.30506 -31.64771 -31.29604 -29.87943 -28.93323 -26.41833 -24.90385 -24.59645 -23.55717 -22.22702 -21.64840 -21.46668 -19.97612 -18.31519 -18.15250 -17.14084 -16.88981 -16.55058 -16.12691 -15.99164 -15.51664 -15.27531 -14.83232 -14.47267 -14.36521 -14.18281 -14.01911 -13.88730 -13.71929 -13.54849 -12.94349 -12.74018 -12.70218 -12.43270 -12.28804 -12.03280 -11.97478 -11.68213 -11.61522 -11.47892 -11.20556 -10.93115 -10.62486 -10.58420 -9.99545 -9.76292 -9.71971 -9.62092 -9.39887 -9.18330 -9.11757 -8.85744 -8.63706 -8.25976 -7.58533 -5.93786 -4.00273 0.54592 0.72758 2.78030 2.86120 3.31471 3.36737 3.39677 3.42764 3.77313 4.19600 4.21589 4.40252 4.41297 4.56514 4.74417 4.75876 4.82723 5.13773 5.20802 5.22169 5.36045 5.37426 5.42958 5.54541 5.61013 5.62172 5.70858 5.73827 5.89941 5.93008 6.02408 6.10402 6.20550 6.29926 6.36927 6.40927 6.46365 6.58825 6.82014 6.87965 7.01304 7.30355 7.35798 7.49846 7.72384 7.78781 7.85221 8.13568 8.23035 8.34391 8.51625 9.04148 9.63729 11.12021 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028256 B = 0.001995 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.702759 B =14028.507773 C =14416.088261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 H 0.103 0.897 4 C 0.520 3.480 5 O -0.513 6.513 6 N -0.735 5.735 7 C 0.163 3.837 8 C -0.115 4.115 9 C -0.071 4.071 10 C -0.155 4.155 11 C 0.103 3.897 12 F -0.140 7.140 13 C -0.156 4.156 14 C -0.071 4.071 15 N -0.515 5.515 16 C 0.058 3.942 17 C -0.115 4.115 18 C -0.110 4.110 19 C 0.055 3.945 20 H 0.035 0.965 21 C -0.513 4.513 22 H 0.053 0.947 23 C 0.062 3.938 24 N -0.887 5.887 25 Si 0.890 3.110 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.068 3.932 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.028 0.972 46 H 0.259 0.741 47 H 0.022 0.978 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 3.264 25.655 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.049 4.049 3 H 0.121 0.879 4 C 0.306 3.694 5 O -0.386 6.386 6 N -0.390 5.390 7 C 0.040 3.960 8 C -0.116 4.116 9 C -0.089 4.089 10 C -0.174 4.174 11 C 0.083 3.917 12 F -0.118 7.118 13 C -0.175 4.175 14 C -0.090 4.090 15 N -0.239 5.239 16 C -0.069 4.069 17 C -0.153 4.153 18 C -0.148 4.148 19 C 0.036 3.964 20 H 0.053 0.947 21 C -0.552 4.552 22 H 0.072 0.928 23 C -0.139 4.139 24 N -0.525 5.525 25 Si 0.718 3.282 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.059 4.059 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.092 0.908 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.408 2.370 25.496 26.171 hybrid contribution -1.472 1.189 -0.582 1.979 sum -6.880 3.559 24.914 26.090 Atomic orbital electron populations 1.22419 0.95969 1.02994 1.02758 1.21625 0.93723 0.98931 0.90570 0.87918 1.20778 0.79908 0.84702 0.83968 1.90691 1.36159 1.25570 1.86167 1.46115 1.55250 1.32621 1.05032 1.20110 0.99634 0.95506 0.80786 1.20016 0.95631 0.98097 0.97867 1.21033 0.99740 0.93978 0.94159 1.21191 0.95686 1.02459 0.98076 1.17806 0.94392 0.94128 0.85348 1.91515 1.88920 1.80768 1.50631 1.21179 1.01267 0.97040 0.97972 1.21013 0.94975 0.98736 0.94256 1.61934 1.58073 1.02821 1.01044 1.22184 0.95142 0.89708 0.99885 1.21638 1.00670 0.97151 0.95817 1.21657 0.98808 0.98393 0.95979 1.18663 0.96196 0.91713 0.89798 0.94716 1.21172 1.33306 1.08696 0.92056 0.92825 1.24945 0.95068 0.95080 0.98836 1.69909 1.35739 1.22114 1.24777 0.86582 0.77965 0.80216 0.83460 1.19903 1.21083 1.21147 1.22371 0.97927 0.96176 0.89391 0.90929 0.91752 0.92380 0.76689 0.90552 0.90410 0.84543 0.84485 0.84527 0.84648 0.90790 0.96139 0.92022 0.93737 0.89179 0.95304 0.93131 0.95934 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.34 37.16 0.31 -1.85 16 2 C 0.06 0.92 2.73 -68.87 -0.19 0.73 16 3 H 0.10 1.33 7.98 -51.93 -0.41 0.92 16 4 C 0.52 7.23 6.83 -10.99 -0.08 7.15 16 5 O -0.51 -9.24 14.35 5.55 0.08 -9.16 16 6 N -0.74 -7.01 5.44 -61.47 -0.33 -7.34 16 7 C 0.16 1.38 5.80 -5.19 -0.03 1.35 16 8 C -0.12 -0.79 5.25 -104.61 -0.55 -1.34 16 9 C -0.07 -0.45 9.70 -39.59 -0.38 -0.83 16 10 C -0.16 -1.02 10.03 -39.52 -0.40 -1.42 16 11 C 0.10 0.77 7.30 -39.42 -0.29 0.48 16 12 F -0.14 -1.20 17.27 2.25 0.04 -1.16 16 13 C -0.16 -1.02 10.03 -39.52 -0.40 -1.41 16 14 C -0.07 -0.45 9.70 -39.59 -0.38 -0.83 16 15 N -0.51 -9.70 4.34 -228.08 -0.99 -10.69 16 16 C 0.06 1.10 4.35 -3.83 -0.02 1.08 16 17 C -0.11 -2.41 6.09 -26.65 -0.16 -2.57 16 18 C -0.11 -2.67 5.02 -26.61 -0.13 -2.80 16 19 C 0.06 1.39 2.27 -91.69 -0.21 1.18 16 20 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 22 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 23 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 24 N -0.89 -25.53 11.35 55.43 0.63 -24.90 16 25 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.07 1.42 4.36 -3.83 -0.02 1.40 16 30 H 0.07 0.93 6.82 -51.93 -0.35 0.57 16 31 H 0.06 0.82 6.46 -51.93 -0.34 0.48 16 32 H 0.06 0.51 7.56 -51.93 -0.39 0.11 16 33 H 0.40 2.92 7.88 -40.82 -0.32 2.60 16 34 H 0.08 0.68 8.09 -51.92 -0.42 0.26 16 35 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.07 1.39 5.80 -51.93 -0.30 1.09 16 41 H 0.02 0.37 6.57 -51.93 -0.34 0.03 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.02 0.46 6.88 -51.93 -0.36 0.10 16 48 H 0.06 1.19 8.01 -51.93 -0.42 0.77 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -31.57 382.41 -10.46 -42.03 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.32 Total: 1.61 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.31 Total: -12.38 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.70 Total: -42.94 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.57 -10.46 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.097 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds