Wall clock time and date at job start Tue Mar 31 2020 17:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.50703 * 109.47138 * 180.28062 * 7 6 4 9 9 C 1.38246 * 119.97328 * 269.72698 * 8 7 6 10 10 C 1.38195 * 120.02726 * 179.72701 * 9 8 7 11 11 C 1.38461 * 119.97135 * 0.52366 * 10 9 8 12 12 F 1.35101 * 120.02217 * 179.73134 * 11 10 9 13 13 C 1.38454 * 119.94949 * 359.74751 * 11 10 9 14 14 C 1.38194 * 119.97573 * 0.02562 * 13 11 10 15 15 N 1.46899 * 109.46555 * 240.00529 * 2 1 3 16 16 C 1.46846 * 111.00302 * 306.04305 * 15 2 1 17 17 C 1.53040 * 109.52612 * 185.83953 * 16 15 2 18 18 C 1.53121 * 109.27852 * 300.82379 * 17 16 15 19 19 C 1.53122 * 109.15829 * 57.65537 * 18 17 16 20 20 H 1.08994 * 109.50471 * 62.32443 * 19 18 17 21 21 C 1.50701 * 109.50057 * 182.40449 * 19 18 17 22 22 H 1.08004 * 120.00432 * 119.99734 * 21 19 18 23 23 C 1.37879 * 120.00009 * 299.99594 * 21 19 18 24 24 N 1.31514 * 120.00029 * 0.02562 * 23 21 19 25 25 Si 1.86799 * 119.99911 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47279 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46994 * 120.00254 * 25 23 21 28 28 H 1.48504 * 109.46981 * 240.00126 * 25 23 21 29 29 C 1.46850 * 111.00092 * 70.25777 * 15 2 1 30 30 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 31 31 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 35 35 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 36 36 H 1.08005 * 119.98234 * 359.97438 * 9 8 7 37 37 H 1.07998 * 120.01263 * 180.29866 * 10 9 8 38 38 H 1.07999 * 120.01109 * 180.02562 * 13 11 10 39 39 H 1.08005 * 119.98869 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.46560 * 305.86063 * 16 15 2 41 41 H 1.09005 * 109.45982 * 65.82575 * 16 15 2 42 42 H 1.09004 * 109.50209 * 60.76140 * 17 16 15 43 43 H 1.08994 * 109.50651 * 180.88203 * 17 16 15 44 44 H 1.09005 * 109.52136 * 177.55753 * 18 17 16 45 45 H 1.08999 * 109.52316 * 297.74847 * 18 17 16 46 46 H 0.96996 * 119.99974 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.45898 * 294.17075 * 29 15 2 48 48 H 1.09001 * 109.46248 * 54.14334 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6834 -0.2374 4.8811 9 6 2.4319 0.7738 5.4541 10 6 1.9656 1.4268 6.5793 11 6 0.7533 1.0605 7.1390 12 9 0.2990 1.6945 8.2421 13 6 0.0072 0.0439 6.5675 14 6 0.4733 -0.6045 5.4396 15 7 2.0195 -0.6924 -1.1995 16 6 1.4344 -2.0349 -1.3080 17 6 2.0742 -2.7784 -2.4827 18 6 1.8315 -1.9897 -3.7726 19 6 2.4078 -0.5798 -3.6156 20 1 3.4853 -0.6420 -3.4630 21 6 2.1212 0.2222 -4.8588 22 1 1.5370 1.1283 -4.7942 23 6 2.6047 -0.2008 -6.0788 24 7 3.3156 -1.3044 -6.1576 25 14 2.2499 0.7937 -7.6197 26 1 1.4361 1.9839 -7.2643 27 1 3.5300 1.2343 -8.2301 28 1 1.5022 -0.0462 -8.5897 29 6 1.7583 0.0999 -2.4080 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.1490 0.5383 2.5436 34 1 1.8264 -1.9720 3.6462 35 1 3.2802 -0.9450 3.6548 36 1 3.3796 1.0563 5.0199 37 1 2.5483 2.2200 7.0239 38 1 -0.9388 -0.2424 7.0030 39 1 -0.1088 -1.3973 4.9934 40 1 1.6176 -2.5865 -0.3859 41 1 0.3603 -1.9506 -1.4732 42 1 3.1463 -2.8751 -2.3116 43 1 1.6285 -3.7690 -2.5726 44 1 2.3226 -2.4933 -4.6053 45 1 0.7604 -1.9261 -3.9646 46 1 3.6554 -1.6022 -7.0159 47 1 0.6827 0.1742 -2.5681 48 1 2.1769 1.0988 -2.2849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:40 Heat of formation + Delta-G solvation = -76.395337 kcal Electronic energy + Delta-G solvation = -28364.904938 eV Core-core repulsion = 24332.937154 eV Total energy + Delta-G solvation = -4031.967784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.92464 -41.34914 -40.19323 -39.18101 -35.96513 -35.81668 -34.04015 -32.15519 -32.12196 -31.67438 -30.25258 -27.17765 -26.89944 -25.78955 -24.03583 -23.48520 -23.26932 -22.37004 -21.15359 -20.02812 -18.72974 -18.49791 -17.95713 -17.45708 -17.36327 -16.66546 -16.59737 -16.39551 -16.11465 -15.84288 -15.44049 -15.32360 -14.97317 -14.78593 -14.65587 -14.52551 -14.41782 -14.27273 -13.87576 -13.58933 -13.30142 -13.25154 -13.22111 -12.85305 -12.82993 -12.71371 -12.59717 -12.46063 -12.22154 -11.96969 -11.75990 -11.60337 -11.41174 -11.04694 -10.64786 -10.57194 -10.33338 -10.10535 -10.02662 -9.66099 -9.02364 -8.04864 -6.19492 0.00758 0.25859 1.42320 1.43738 1.55152 1.71094 2.09647 2.45092 2.68765 3.16557 3.22044 3.26311 3.61462 3.74394 3.85430 3.96582 4.05997 4.14746 4.20145 4.28454 4.30914 4.35747 4.43755 4.63803 4.65640 4.66833 4.73338 4.75807 4.86905 4.90504 4.97737 4.98275 5.02815 5.14428 5.14667 5.20098 5.21982 5.26647 5.41349 5.46171 5.50753 5.54775 5.66590 5.87393 5.98755 6.14523 6.24008 6.28001 6.48487 6.64475 6.94381 7.34351 7.48510 9.00072 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028256 B = 0.001995 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.702759 B =14028.507773 C =14416.088261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 H 0.119 0.881 4 C 0.524 3.476 5 O -0.560 6.560 6 N -0.713 5.713 7 C 0.166 3.834 8 C -0.116 4.116 9 C -0.071 4.071 10 C -0.158 4.158 11 C 0.086 3.914 12 F -0.150 7.150 13 C -0.157 4.157 14 C -0.069 4.069 15 N -0.536 5.536 16 C 0.070 3.930 17 C -0.110 4.110 18 C -0.101 4.101 19 C 0.051 3.949 20 H -0.010 1.010 21 C -0.530 4.530 22 H 0.057 0.943 23 C 0.009 3.991 24 N -0.918 5.918 25 Si 0.957 3.043 26 H -0.263 1.263 27 H -0.283 1.283 28 H -0.282 1.282 29 C 0.084 3.916 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.413 0.587 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.027 0.973 46 H 0.259 0.741 47 H 0.030 0.970 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 4.569 27.107 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.051 4.051 3 H 0.136 0.864 4 C 0.310 3.690 5 O -0.438 6.438 6 N -0.367 5.367 7 C 0.043 3.957 8 C -0.116 4.116 9 C -0.089 4.089 10 C -0.177 4.177 11 C 0.067 3.933 12 F -0.128 7.128 13 C -0.176 4.176 14 C -0.088 4.088 15 N -0.260 5.260 16 C -0.058 4.058 17 C -0.148 4.148 18 C -0.139 4.139 19 C 0.032 3.968 20 H 0.008 0.992 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.189 4.189 24 N -0.558 5.558 25 Si 0.782 3.218 26 H -0.187 1.187 27 H -0.209 1.209 28 H -0.208 1.208 29 C -0.043 4.043 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.048 0.952 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.200 3.718 26.998 28.188 hybrid contribution -0.887 0.790 -0.945 1.518 sum -8.087 4.508 26.052 27.649 Atomic orbital electron populations 1.22348 0.93602 1.03021 1.04315 1.21751 0.95586 0.99091 0.88717 0.86375 1.20670 0.79366 0.84031 0.84933 1.90681 1.38500 1.27702 1.86882 1.45903 1.54181 1.32533 1.04106 1.20107 0.99302 0.95529 0.80771 1.19870 0.96066 0.98339 0.97350 1.21165 1.00086 0.93679 0.94020 1.21353 0.95534 1.02734 0.98038 1.18076 0.95085 0.94744 0.85443 1.91490 1.89091 1.81051 1.51200 1.21358 1.01736 0.96594 0.97898 1.21161 0.94776 0.98809 0.94026 1.61753 1.59471 1.02933 1.01846 1.22031 0.95427 0.89664 0.98665 1.21557 0.99721 0.98165 0.95321 1.21451 0.97917 0.98104 0.96455 1.18598 0.93904 0.92720 0.91560 0.99187 1.21547 1.33188 1.08996 0.93121 0.92447 1.25785 0.94939 0.96095 1.02099 1.70071 1.36658 1.23607 1.25429 0.85529 0.77814 0.78971 0.79448 1.18730 1.20928 1.20814 1.22009 0.97633 0.95908 0.88737 0.91614 0.92446 0.88581 0.74974 0.90767 0.91068 0.83472 0.83293 0.83177 0.83235 0.90320 0.94855 0.94262 0.91800 0.92625 0.95420 0.93205 0.95231 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 8.34 71.98 0.60 -2.97 16 2 C 0.06 1.59 2.73 44.17 0.12 1.71 16 3 H 0.12 2.75 7.98 -2.39 -0.02 2.73 16 4 C 0.52 13.58 6.83 87.66 0.60 14.17 16 5 O -0.56 -19.82 14.35 -3.04 -0.04 -19.86 16 6 N -0.71 -11.70 5.44 -466.78 -2.54 -14.24 16 7 C 0.17 2.47 5.80 85.63 0.50 2.97 16 8 C -0.12 -1.30 5.25 -19.86 -0.10 -1.40 16 9 C -0.07 -0.75 9.70 22.26 0.22 -0.53 16 10 C -0.16 -1.78 10.03 22.31 0.22 -1.55 16 11 C 0.09 1.15 7.30 22.37 0.16 1.31 16 12 F -0.15 -2.40 17.27 44.97 0.78 -1.63 16 13 C -0.16 -1.70 10.03 22.31 0.22 -1.48 16 14 C -0.07 -0.69 9.70 22.26 0.22 -0.47 16 15 N -0.54 -19.84 4.34 -875.50 -3.80 -23.64 16 16 C 0.07 2.57 4.35 86.33 0.38 2.95 16 17 C -0.11 -4.68 6.09 30.65 0.19 -4.49 16 18 C -0.10 -5.04 5.02 30.68 0.15 -4.88 16 19 C 0.05 2.65 2.27 -11.49 -0.03 2.63 16 20 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 21 C -0.53 -29.37 8.56 25.60 0.22 -29.15 16 22 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 23 C 0.01 0.52 5.30 84.66 0.45 0.96 16 24 N -0.92 -54.55 11.35 21.45 0.24 -54.30 16 25 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 29 C 0.08 3.49 4.36 86.33 0.38 3.86 16 30 H 0.06 1.48 6.82 -2.39 -0.02 1.46 16 31 H 0.06 1.28 6.46 -2.39 -0.02 1.26 16 32 H 0.10 1.23 7.56 -2.39 -0.02 1.21 16 33 H 0.41 4.53 7.88 -92.71 -0.73 3.80 16 34 H 0.07 1.19 8.09 -2.38 -0.02 1.17 16 35 H 0.07 1.20 8.08 -2.39 -0.02 1.19 16 36 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.08 2.89 5.80 -2.39 -0.01 2.88 16 41 H 0.03 1.15 6.57 -2.38 -0.02 1.13 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.06 3.14 6.15 -2.38 -0.01 3.13 16 45 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 47 H 0.03 1.18 6.88 -2.39 -0.02 1.16 16 48 H 0.06 2.50 8.01 -2.39 -0.02 2.48 16 Total: -1.00 -70.56 382.41 1.39 -69.17 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.24 Total: 14.94 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 4.49 Total: -16.37 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -6.10 Total: -92.19 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.78 Total: -1.63 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.56 1.39 -69.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.227 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds