Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.50703 * 109.47138 * 180.28062 * 7 6 4 9 9 C 1.38216 * 120.01801 * 105.00153 * 8 7 6 10 10 C 1.38217 * 120.02902 * 179.97438 * 9 8 7 11 11 C 1.38263 * 120.05381 * 0.02562 * 10 9 8 12 12 C 1.38182 * 120.02139 * 0.02562 * 11 10 9 13 13 C 1.38439 * 120.00864 * 284.72161 * 8 7 6 14 14 F 1.35098 * 120.02844 * 0.02562 * 13 8 7 15 15 N 1.46899 * 109.46555 * 240.00529 * 2 1 3 16 16 C 1.46846 * 111.00302 * 306.04305 * 15 2 1 17 17 C 1.53041 * 109.52267 * 174.16053 * 16 15 2 18 18 C 1.53113 * 109.27586 * 59.18484 * 17 16 15 19 19 C 1.53114 * 109.16355 * 302.34037 * 18 17 16 20 20 H 1.09003 * 109.50281 * 297.67685 * 19 18 17 21 21 C 1.50694 * 109.50786 * 177.59745 * 19 18 17 22 22 H 1.08001 * 120.00034 * 240.00178 * 21 19 18 23 23 C 1.37874 * 120.00018 * 60.00167 * 21 19 18 24 24 N 1.31515 * 120.00140 * 359.97438 * 23 21 19 25 25 Si 1.86809 * 120.00292 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46999 * 59.99779 * 25 23 21 27 27 H 1.48497 * 109.47041 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46866 * 299.99824 * 25 23 21 29 29 C 1.46854 * 110.99937 * 181.83485 * 15 2 1 30 30 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 32 32 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 35 35 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 36 36 H 1.08007 * 119.98405 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.97479 * 180.02562 * 10 9 8 38 38 H 1.07994 * 119.99169 * 179.97438 * 11 10 9 39 39 H 1.08003 * 120.01267 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.46435 * 294.17979 * 16 15 2 41 41 H 1.09003 * 109.46206 * 54.15130 * 16 15 2 42 42 H 1.09007 * 109.50069 * 179.12055 * 17 16 15 43 43 H 1.08995 * 109.50445 * 299.19921 * 17 16 15 44 44 H 1.08998 * 109.52838 * 62.24954 * 18 17 16 45 45 H 1.09002 * 109.52391 * 182.43670 * 18 17 16 46 46 H 0.96998 * 120.00309 * 179.97438 * 24 23 21 47 47 H 1.09000 * 109.45967 * 305.86016 * 29 15 2 48 48 H 1.09007 * 109.45768 * 65.82618 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6834 -0.2374 4.8811 9 6 0.6520 -0.7870 5.6189 10 6 0.1874 -0.1390 6.7479 11 6 0.7532 1.0600 7.1403 12 6 1.7838 1.6120 6.4036 13 6 2.2547 0.9602 5.2762 14 9 3.2664 1.4958 4.5587 15 7 2.0195 -0.6924 -1.1995 16 6 1.4344 -2.0349 -1.3080 17 6 1.8505 -2.6683 -2.6376 18 6 3.3780 -2.7503 -2.7023 19 6 3.9642 -1.3453 -2.5385 20 1 3.6311 -0.7138 -3.3621 21 6 5.4691 -1.4244 -2.5419 22 1 6.0298 -1.0813 -1.6850 23 6 6.1301 -1.9346 -3.6390 24 7 5.4473 -2.3529 -4.6823 25 14 7.9956 -2.0333 -3.6430 26 1 8.4482 -2.8927 -2.5197 27 1 8.4577 -2.6157 -4.9285 28 1 8.5637 -0.6705 -3.4838 29 6 3.4869 -0.7502 -1.2118 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8898 33 1 1.1490 0.5383 2.5436 34 1 1.8264 -1.9720 3.6462 35 1 3.2802 -0.9450 3.6548 36 1 0.2089 -1.7234 5.3131 37 1 -0.6183 -0.5695 7.3240 38 1 0.3891 1.5657 8.0223 39 1 2.2254 2.5487 6.7100 40 1 1.7898 -2.6536 -0.4840 41 1 0.3477 -1.9620 -1.2648 42 1 1.4288 -3.6708 -2.7108 43 1 1.4829 -2.0577 -3.4623 44 1 3.7427 -3.3928 -1.9009 45 1 3.6803 -3.1610 -3.6656 46 1 5.9124 -2.7115 -5.4543 47 1 3.8909 0.2558 -1.0987 48 1 3.8326 -1.3750 -0.3882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = -51.229087 kcal Electronic energy + Delta-G solvation = -29253.079763 eV Core-core repulsion = 25222.203269 eV Total energy + Delta-G solvation = -4030.876494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.20580 -40.34428 -39.44044 -37.40752 -35.02846 -34.19520 -32.33973 -31.60965 -30.89635 -30.00443 -28.97668 -26.61812 -24.91672 -24.03130 -23.23179 -22.36503 -21.69506 -21.19502 -19.81641 -18.67029 -17.99027 -16.98630 -16.83047 -16.52498 -16.12440 -15.89141 -15.60538 -15.14386 -14.86589 -14.60345 -14.48912 -14.22596 -13.78274 -13.61018 -13.35261 -13.20605 -13.02879 -12.70761 -12.57010 -12.45106 -12.19169 -11.95913 -11.81138 -11.67114 -11.43311 -11.39848 -11.10381 -10.81606 -10.57117 -10.36358 -10.08051 -9.86930 -9.66303 -9.49045 -9.32168 -9.13942 -8.97589 -8.87528 -8.56047 -8.16885 -7.37007 -5.84895 -3.89766 0.62388 0.73617 2.80694 2.98034 3.40859 3.44345 3.44533 3.48025 3.84417 4.15282 4.29698 4.42576 4.49652 4.60258 4.74570 4.85641 4.92217 5.15931 5.23918 5.28008 5.33867 5.44736 5.53647 5.57920 5.61236 5.69483 5.86310 5.88403 5.92763 5.94304 6.06480 6.16910 6.25056 6.34759 6.42098 6.53902 6.67951 6.74407 6.91657 7.01942 7.21441 7.37722 7.43836 7.56886 7.77536 7.87709 7.92554 8.24759 8.31327 8.41439 8.64444 9.13923 9.73318 11.21150 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002743 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.343622 B =10205.251870 C =11256.605045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 H 0.103 0.897 4 C 0.483 3.517 5 O -0.517 6.517 6 N -0.731 5.731 7 C 0.161 3.839 8 C -0.139 4.139 9 C -0.073 4.073 10 C -0.133 4.133 11 C -0.086 4.086 12 C -0.157 4.157 13 C 0.115 3.885 14 F -0.131 7.131 15 N -0.508 5.508 16 C 0.047 3.953 17 C -0.114 4.114 18 C -0.109 4.109 19 C 0.059 3.941 20 H 0.029 0.971 21 C -0.509 4.509 22 H 0.051 0.949 23 C 0.062 3.938 24 N -0.890 5.890 25 Si 0.889 3.111 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 C 0.047 3.953 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.031 0.969 45 H 0.088 0.912 46 H 0.258 0.742 47 H 0.048 0.952 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.320 6.728 22.786 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 H 0.121 0.879 4 C 0.269 3.731 5 O -0.392 6.392 6 N -0.386 5.386 7 C 0.037 3.963 8 C -0.140 4.140 9 C -0.092 4.092 10 C -0.151 4.151 11 C -0.105 4.105 12 C -0.176 4.176 13 C 0.095 3.905 14 F -0.109 7.109 15 N -0.231 5.231 16 C -0.080 4.080 17 C -0.152 4.152 18 C -0.147 4.147 19 C 0.040 3.960 20 H 0.047 0.953 21 C -0.548 4.548 22 H 0.070 0.930 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.717 3.283 26 H -0.204 1.204 27 H -0.214 1.214 28 H -0.204 1.204 29 C -0.079 4.079 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.231 0.769 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.859 6.189 22.026 27.281 hybrid contribution 1.292 0.031 0.785 1.512 sum -13.567 6.220 22.811 27.260 Atomic orbital electron populations 1.21865 0.92849 1.02788 1.02420 1.21964 0.96667 0.99539 0.86831 0.87889 1.22612 0.80157 0.85282 0.85033 1.90695 1.36499 1.26111 1.85910 1.46337 1.54733 1.32301 1.05226 1.20046 0.99826 0.95581 0.80846 1.20050 0.99090 0.95560 0.99306 1.21048 0.94289 0.99739 0.94098 1.21239 1.00830 0.95777 0.97247 1.21083 0.94900 0.95405 0.99078 1.21211 0.99424 1.01653 0.95303 1.17655 0.87832 0.93137 0.91892 1.91558 1.57066 1.85420 1.76878 1.62542 1.10628 1.18897 1.30996 1.22266 0.97308 0.89433 0.99038 1.21639 0.99775 0.97927 0.95883 1.21616 0.90311 1.00086 1.02659 1.18609 0.94103 0.92347 0.90962 0.95301 1.21125 0.91494 1.40874 1.01259 0.93034 1.24922 0.97878 0.95514 0.95577 1.69889 1.34860 1.42625 1.05598 0.86712 0.86298 0.78245 0.77033 1.20416 1.21385 1.20388 1.22652 0.83239 1.00017 1.02007 0.91859 0.92518 0.90531 0.76914 0.90281 0.90396 0.84716 0.85096 0.84907 0.84539 0.93352 0.92610 0.93766 0.92479 0.95020 0.89361 0.93163 0.93327 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.67 37.16 0.32 -1.28 16 2 C 0.06 0.95 2.88 -68.87 -0.20 0.75 16 3 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.48 7.59 6.57 -10.99 -0.07 7.52 16 5 O -0.52 -10.45 11.62 5.55 0.06 -10.38 16 6 N -0.73 -8.65 5.44 -61.47 -0.33 -8.99 16 7 C 0.16 1.81 5.49 -5.19 -0.03 1.78 16 8 C -0.14 -1.25 5.25 -104.55 -0.55 -1.80 16 9 C -0.07 -0.51 9.67 -39.60 -0.38 -0.89 16 10 C -0.13 -0.75 10.04 -39.58 -0.40 -1.14 16 11 C -0.09 -0.48 10.04 -39.59 -0.40 -0.88 16 12 C -0.16 -1.13 10.03 -39.51 -0.40 -1.53 16 13 C 0.11 1.08 7.25 -39.42 -0.29 0.80 16 14 F -0.13 -1.53 16.75 2.25 0.04 -1.49 16 15 N -0.51 -9.85 4.70 -228.07 -1.07 -10.92 16 16 C 0.05 0.90 4.72 -3.83 -0.02 0.88 16 17 C -0.11 -2.41 6.09 -26.65 -0.16 -2.58 16 18 C -0.11 -2.78 5.02 -26.61 -0.13 -2.91 16 19 C 0.06 1.57 2.26 -91.70 -0.21 1.36 16 20 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.51 -14.84 8.56 -34.44 -0.29 -15.14 16 22 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 23 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 24 N -0.89 -26.48 11.35 55.43 0.63 -25.85 16 25 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 C 0.05 1.10 4.20 -3.83 -0.02 1.08 16 30 H 0.06 0.75 6.20 -51.93 -0.32 0.43 16 31 H 0.06 0.48 7.56 -51.93 -0.39 0.08 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 3.74 7.88 -40.82 -0.32 3.42 16 34 H 0.08 0.88 7.95 -51.92 -0.41 0.47 16 35 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 36 H 0.13 0.75 8.00 -52.48 -0.42 0.33 16 37 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 39 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 40 H 0.05 1.01 6.00 -51.93 -0.31 0.70 16 41 H 0.06 0.91 5.87 -51.93 -0.30 0.61 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.05 1.12 8.12 -51.93 -0.42 0.70 16 48 H 0.06 1.56 5.36 -51.93 -0.28 1.28 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -33.36 379.03 -10.57 -43.93 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.27 Total: 2.97 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.31 Total: -12.27 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.78 Total: -45.76 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.06 Total: -10.38 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.36 -10.57 -43.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.300 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds