Wall clock time and date at job start Tue Mar 31 2020 17:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.50703 * 109.47138 * 180.28062 * 7 6 4 9 9 C 1.38216 * 120.01801 * 105.00153 * 8 7 6 10 10 C 1.38217 * 120.02902 * 179.97438 * 9 8 7 11 11 C 1.38263 * 120.05381 * 0.02562 * 10 9 8 12 12 C 1.38182 * 120.02139 * 0.02562 * 11 10 9 13 13 C 1.38439 * 120.00864 * 284.72161 * 8 7 6 14 14 F 1.35098 * 120.02844 * 0.02562 * 13 8 7 15 15 N 1.46899 * 109.46555 * 240.00529 * 2 1 3 16 16 C 1.46846 * 111.00302 * 306.04305 * 15 2 1 17 17 C 1.53041 * 109.52267 * 174.16053 * 16 15 2 18 18 C 1.53113 * 109.27586 * 59.18484 * 17 16 15 19 19 C 1.53114 * 109.16355 * 302.34037 * 18 17 16 20 20 H 1.09003 * 109.50281 * 297.67685 * 19 18 17 21 21 C 1.50694 * 109.50786 * 177.59745 * 19 18 17 22 22 H 1.08001 * 120.00034 * 240.00178 * 21 19 18 23 23 C 1.37874 * 120.00018 * 60.00167 * 21 19 18 24 24 N 1.31515 * 120.00140 * 359.97438 * 23 21 19 25 25 Si 1.86809 * 120.00292 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46999 * 59.99779 * 25 23 21 27 27 H 1.48497 * 109.47041 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46866 * 299.99824 * 25 23 21 29 29 C 1.46854 * 110.99937 * 181.83485 * 15 2 1 30 30 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 32 32 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 35 35 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 36 36 H 1.08007 * 119.98405 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.97479 * 180.02562 * 10 9 8 38 38 H 1.07994 * 119.99169 * 179.97438 * 11 10 9 39 39 H 1.08003 * 120.01267 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.46435 * 294.17979 * 16 15 2 41 41 H 1.09003 * 109.46206 * 54.15130 * 16 15 2 42 42 H 1.09007 * 109.50069 * 179.12055 * 17 16 15 43 43 H 1.08995 * 109.50445 * 299.19921 * 17 16 15 44 44 H 1.08998 * 109.52838 * 62.24954 * 18 17 16 45 45 H 1.09002 * 109.52391 * 182.43670 * 18 17 16 46 46 H 0.96998 * 120.00309 * 179.97438 * 24 23 21 47 47 H 1.09000 * 109.45967 * 305.86016 * 29 15 2 48 48 H 1.09007 * 109.45768 * 65.82618 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6834 -0.2374 4.8811 9 6 0.6520 -0.7870 5.6189 10 6 0.1874 -0.1390 6.7479 11 6 0.7532 1.0600 7.1403 12 6 1.7838 1.6120 6.4036 13 6 2.2547 0.9602 5.2762 14 9 3.2664 1.4958 4.5587 15 7 2.0195 -0.6924 -1.1995 16 6 1.4344 -2.0349 -1.3080 17 6 1.8505 -2.6683 -2.6376 18 6 3.3780 -2.7503 -2.7023 19 6 3.9642 -1.3453 -2.5385 20 1 3.6311 -0.7138 -3.3621 21 6 5.4691 -1.4244 -2.5419 22 1 6.0298 -1.0813 -1.6850 23 6 6.1301 -1.9346 -3.6390 24 7 5.4473 -2.3529 -4.6823 25 14 7.9956 -2.0333 -3.6430 26 1 8.4482 -2.8927 -2.5197 27 1 8.4577 -2.6157 -4.9285 28 1 8.5637 -0.6705 -3.4838 29 6 3.4869 -0.7502 -1.2118 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8898 33 1 1.1490 0.5383 2.5436 34 1 1.8264 -1.9720 3.6462 35 1 3.2802 -0.9450 3.6548 36 1 0.2089 -1.7234 5.3131 37 1 -0.6183 -0.5695 7.3240 38 1 0.3891 1.5657 8.0223 39 1 2.2254 2.5487 6.7100 40 1 1.7898 -2.6536 -0.4840 41 1 0.3477 -1.9620 -1.2648 42 1 1.4288 -3.6708 -2.7108 43 1 1.4829 -2.0577 -3.4623 44 1 3.7427 -3.3928 -1.9009 45 1 3.6803 -3.1610 -3.6656 46 1 5.9124 -2.7115 -5.4543 47 1 3.8909 0.2558 -1.0987 48 1 3.8326 -1.3750 -0.3882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:53 Heat of formation + Delta-G solvation = -73.128345 kcal Electronic energy + Delta-G solvation = -29254.029386 eV Core-core repulsion = 25222.203269 eV Total energy + Delta-G solvation = -4031.826117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.97097 -41.63712 -40.10906 -38.93807 -36.14324 -35.89392 -34.08950 -32.58882 -31.80804 -31.46165 -30.47635 -27.52748 -26.87741 -25.47176 -23.82117 -23.76665 -23.01925 -22.44021 -21.10096 -20.50855 -18.75214 -18.43304 -18.02621 -17.52527 -17.45634 -16.77113 -16.61601 -16.51676 -16.34095 -15.99181 -15.70547 -15.24416 -15.03745 -14.92661 -14.62016 -14.37660 -14.08465 -14.03157 -13.96715 -13.68058 -13.28391 -13.24540 -13.11189 -12.97945 -12.83569 -12.75203 -12.57011 -12.45997 -12.04993 -11.99495 -11.71349 -11.62047 -11.38791 -11.30503 -10.84210 -10.67057 -10.38630 -10.16606 -10.04202 -9.71826 -8.95359 -8.08837 -6.22633 0.05069 0.21224 1.37045 1.39789 1.47384 1.57251 2.16235 2.41042 2.69278 3.02966 3.16861 3.25242 3.44034 3.72478 3.80987 4.01150 4.04666 4.15754 4.21010 4.25223 4.35727 4.38819 4.50029 4.52474 4.56598 4.69877 4.76556 4.83384 4.88028 4.90338 5.01566 5.06283 5.07089 5.14432 5.17807 5.19920 5.28807 5.34590 5.40314 5.43886 5.45752 5.51585 5.62324 5.89940 5.95788 6.10252 6.18447 6.21870 6.46341 6.51216 6.88314 7.22427 7.44026 8.95758 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002743 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.343622 B =10205.251870 C =11256.605045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.115 0.885 4 C 0.483 3.517 5 O -0.569 6.569 6 N -0.711 5.711 7 C 0.164 3.836 8 C -0.149 4.149 9 C -0.075 4.075 10 C -0.125 4.125 11 C -0.079 4.079 12 C -0.160 4.160 13 C 0.086 3.914 14 F -0.153 7.153 15 N -0.513 5.513 16 C 0.055 3.945 17 C -0.109 4.109 18 C -0.100 4.100 19 C 0.058 3.942 20 H -0.003 1.003 21 C -0.538 4.538 22 H 0.042 0.958 23 C 0.015 3.985 24 N -0.914 5.914 25 Si 0.954 3.046 26 H -0.276 1.276 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.066 3.934 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.031 0.969 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.010 0.990 45 H 0.059 0.941 46 H 0.261 0.739 47 H 0.042 0.958 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.829 7.644 25.195 31.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.054 4.054 3 H 0.132 0.868 4 C 0.269 3.731 5 O -0.448 6.448 6 N -0.365 5.365 7 C 0.040 3.960 8 C -0.150 4.150 9 C -0.093 4.093 10 C -0.143 4.143 11 C -0.097 4.097 12 C -0.179 4.179 13 C 0.066 3.934 14 F -0.132 7.132 15 N -0.236 5.236 16 C -0.072 4.072 17 C -0.146 4.146 18 C -0.139 4.139 19 C 0.039 3.961 20 H 0.016 0.984 21 C -0.576 4.576 22 H 0.060 0.940 23 C -0.184 4.184 24 N -0.553 5.553 25 Si 0.779 3.221 26 H -0.202 1.202 27 H -0.203 1.203 28 H -0.195 1.195 29 C -0.062 4.062 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.248 0.752 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.166 0.834 37 H 0.179 0.821 38 H 0.182 0.818 39 H 0.166 0.834 40 H 0.049 0.951 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.410 7.147 24.473 30.872 hybrid contribution 2.013 -0.216 0.157 2.030 sum -15.397 6.931 24.629 29.861 Atomic orbital electron populations 1.21864 0.89217 1.03314 1.04633 1.22167 0.99375 0.99059 0.84769 0.86755 1.22634 0.79537 0.84634 0.86274 1.90686 1.38896 1.28489 1.86685 1.46116 1.53696 1.32213 1.04450 1.19964 0.98213 0.96061 0.81716 1.19867 1.00486 0.95779 0.98909 1.21260 0.93521 1.00235 0.94291 1.21622 1.00855 0.95362 0.96422 1.21498 0.93588 0.95221 0.99343 1.21451 0.99819 1.02074 0.94556 1.17998 0.88248 0.93995 0.93121 1.91498 1.58245 1.85830 1.77623 1.62434 1.07831 1.19239 1.34089 1.22209 0.99363 0.88848 0.96820 1.21567 0.96160 0.99617 0.97299 1.21410 0.93840 0.98637 0.99967 1.18528 0.93253 0.92667 0.91682 0.98446 1.21457 0.93149 1.41655 1.01375 0.94008 1.25711 1.02691 0.94908 0.95102 1.70020 1.36620 1.42680 1.05974 0.85688 0.80510 0.78556 0.77348 1.20175 1.20251 1.19508 1.22208 0.86263 0.98668 0.99016 0.92060 0.88970 0.89732 0.75171 0.90193 0.93328 0.83373 0.82111 0.81800 0.83385 0.95113 0.88661 0.91542 0.92545 0.97159 0.92280 0.92950 0.93964 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.67 71.98 0.62 -1.94 16 2 C 0.06 1.70 2.88 44.17 0.13 1.82 16 3 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 4 C 0.48 15.16 6.57 87.66 0.58 15.74 16 5 O -0.57 -23.85 11.62 -3.04 -0.04 -23.89 16 6 N -0.71 -16.43 5.44 -466.78 -2.54 -18.97 16 7 C 0.16 3.77 5.49 85.63 0.47 4.24 16 8 C -0.15 -2.56 5.25 -19.82 -0.10 -2.66 16 9 C -0.07 -0.85 9.67 22.26 0.22 -0.64 16 10 C -0.12 -0.92 10.04 22.27 0.22 -0.69 16 11 C -0.08 -0.59 10.04 22.26 0.22 -0.37 16 12 C -0.16 -1.99 10.03 22.31 0.22 -1.77 16 13 C 0.09 1.58 7.25 22.38 0.16 1.74 16 14 F -0.15 -3.71 16.75 44.97 0.75 -2.95 16 15 N -0.51 -19.94 4.70 -875.48 -4.11 -24.05 16 16 C 0.05 2.07 4.72 86.33 0.41 2.48 16 17 C -0.11 -4.61 6.09 30.65 0.19 -4.43 16 18 C -0.10 -5.37 5.02 30.67 0.15 -5.22 16 19 C 0.06 3.24 2.26 -11.49 -0.03 3.21 16 20 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 21 C -0.54 -32.87 8.56 25.60 0.22 -32.65 16 22 H 0.04 2.56 7.74 -2.91 -0.02 2.53 16 23 C 0.01 0.87 5.30 84.65 0.45 1.32 16 24 N -0.91 -56.05 11.35 21.45 0.24 -55.81 16 25 Si 0.95 46.86 29.54 68.60 2.03 48.89 16 26 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 28 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 29 C 0.07 3.20 4.20 86.32 0.36 3.57 16 30 H 0.06 1.24 6.20 -2.39 -0.01 1.22 16 31 H 0.09 1.15 7.56 -2.39 -0.02 1.13 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 7.05 7.88 -92.71 -0.73 6.32 16 34 H 0.08 1.81 7.95 -2.38 -0.02 1.79 16 35 H 0.05 1.40 8.07 -2.39 -0.02 1.38 16 36 H 0.15 1.25 8.00 -2.91 -0.02 1.22 16 37 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 38 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.03 1.30 6.00 -2.39 -0.01 1.28 16 41 H 0.10 2.87 5.87 -2.39 -0.01 2.86 16 42 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 3.48 6.15 -2.39 -0.01 3.46 16 46 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.04 2.04 8.12 -2.39 -0.02 2.02 16 48 H 0.04 2.19 5.36 -2.38 -0.01 2.18 16 Total: -1.00 -77.91 379.03 1.07 -76.84 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.24 Total: 16.19 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.49 Total: -16.25 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -6.41 Total: -98.83 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.04 Total: -23.89 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.75 Total: -2.95 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.91 1.07 -76.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.713 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds